Gvermi875.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi875.t1
Unique NameGvermi875.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length203
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:767196..768706 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMS263CT
PFAMsPfkB
Max annot lvl2759|Eukaryota
Evalue9.29e-58
EggNOG OGsKOG2947@1|root,KOG2947@2759|Eukaryota
DescriptionBelongs to the carbohydrate kinase PfkB family
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi875Gvermi875Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2952 767196..768706 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi875.t1Gvermi875.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2952 767196..768706 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi875.t1.start1Gvermi875.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2952 767196..767198 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi875.t1.CDS1Gvermi875.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 767196..767759 +
Gvermi875.t1.CDS2Gvermi875.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 768662..768706 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi875.t1.exon1Gvermi875.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 767196..767759 +
Gvermi875.t1.exon2Gvermi875.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 768662..768706 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi875.t1.intron1Gvermi875.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_2952 767760..768661 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi875.t1.stop1Gvermi875.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2952 768704..768706 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi875.t1 ID=Gvermi875.t1|Name=Gvermi875.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=203bp
LRDVRVLGLGLSAVDLLAKVNRFPRPDDKIRTEELRVLGGGNAANSLTAL
RRLGVPCVLASKLGDDMYGRAALRELRRDGIDTRFVRVSAATNTALTYVI
VDSTHHTRTCISTPATEPLFEADVADHMLHGVRLVVLDGRHTLAAIRLAQ
LAAERRIPVLLDIERQRPHIERLLPYADYIVTNATYPSNTANRQWTALAI
RM*
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spliced messenger RNA

>Gvermi875.t1 ID=Gvermi875.t1|Name=Gvermi875.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=609bp|location=Sequence derived from alignment at ScGOVlb_2952:767196..768706+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGCGCGACGTGCGCGTGCTGGGCCTGGGGCTGTCCGCCGTCGACCTGCT
GGCCAAGGTGAACCGCTTCCCGCGCCCCGACGACAAGATCCGCACCGAGG
AGCTGCGCGTGCTGGGCGGCGGCAACGCGGCCAACTCGCTCACCGCGCTG
CGCCGCCTCGGCGTGCCGTGCGTGCTCGCCTCCAAGCTGGGCGACGACAT
GTACGGCCGCGCGGCGCTGCGCGAGCTGAGGCGCGACGGAATCGACACGC
GCTTCGTGCGCGTCAGCGCCGCAACCAACACCGCCCTCACGTACGTCATC
GTCGACAGCACGCACCACACGCGCACGTGCATCTCCACGCCGGCCACCGA
GCCGCTGTTCGAGGCCGACGTCGCCGACCACATGCTGCACGGCGTGCGGC
TGGTCGTGCTGGACGGGCGCCACACGCTGGCCGCCATCCGCCTGGCGCAG
CTCGCCGCCGAGCGCCGCATCCCCGTGCTGCTCGACATTGAGCGCCAGCG
CCCGCACATTGAGCGGCTGCTGCCGTACGCCGACTACATTGTCACCAACG
CCACGTACCCGTCGAACACTGCAAATCGACAATGGACTGCGCTTGCTATC
CGTATGTAG
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protein sequence of Gvermi875.t1

>Gvermi875.t1 ID=Gvermi875.t1|Name=Gvermi875.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=203bp
LRDVRVLGLGLSAVDLLAKVNRFPRPDDKIRTEELRVLGGGNAANSLTAL
RRLGVPCVLASKLGDDMYGRAALRELRRDGIDTRFVRVSAATNTALTYVI
VDSTHHTRTCISTPATEPLFEADVADHMLHGVRLVVLDGRHTLAAIRLAQ
LAAERRIPVLLDIERQRPHIERLLPYADYIVTNATYPSNTANRQWTALAI
RM*
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mRNA from alignment at ScGOVlb_2952:767196..768706+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi875.t1 ID=Gvermi875.t1|Name=Gvermi875.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1511bp|location=Sequence derived from alignment at ScGOVlb_2952:767196..768706+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCGCGACGTGCGCGTGCTGGGCCTGGGGCTGTCCGCCGTCGACCTGCT
GGCCAAGGTGAACCGCTTCCCGCGCCCCGACGACAAGATCCGCACCGAGG
AGCTGCGCGTGCTGGGCGGCGGCAACGCGGCCAACTCGCTCACCGCGCTG
CGCCGCCTCGGCGTGCCGTGCGTGCTCGCCTCCAAGCTGGGCGACGACAT
GTACGGCCGCGCGGCGCTGCGCGAGCTGAGGCGCGACGGAATCGACACGC
GCTTCGTGCGCGTCAGCGCCGCAACCAACACCGCCCTCACGTACGTCATC
GTCGACAGCACGCACCACACGCGCACGTGCATCTCCACGCCGGCCACCGA
GCCGCTGTTCGAGGCCGACGTCGCCGACCACATGCTGCACGGCGTGCGGC
TGGTCGTGCTGGACGGGCGCCACACGCTGGCCGCCATCCGCCTGGCGCAG
CTCGCCGCCGAGCGCCGCATCCCCGTGCTGCTCGACATTGAGCGCCAGCG
CCCGCACATTGAGCGGCTGCTGCCGTACGCCGACTACATTGTCACCAACG
CCACGTACCCGTCGGTGTTGTCGCCAGAGGCGCCGACGCGCGCGCACGCG
CTCAGCGAGCTGCTGCAGCGCAGCGGCGCGCGCTTCGTGATCGGCACGCg
cggcgcggcgggcagcgtgctggtgcgcgccgacgcgccgcgcagcagcg
gcgcgcgcgcgcggcggctggtgcggcggcgcgtggtggcgcacggcgcg
tcgcagcggcgCGTCGAGCTGCTCGAGTGCGCGGCGTGGCCGGCCGAGCG
CGTGGTGGACACCACCGGCGCGGGCGACGCGTTTGTGGGCGGCGTGGCGT
ACGGCGTCGTGGCCGGGCTGGAGCTGGAGCGCACGCTGGCGCTGGCGTCG
TTCGTGGCCGCCGCCAAGCTGCGCGCGCTCGGCGCGCGCAGCGCGCTGCC
GCGCCGCGAGCGCGTGCCGCGCGCGCTGCTGGCCGCGCTGCCCGCGCTGT
GAGcgccgccgccgccgccgccgccgccgccgccgccgccgccgcGCTCT
GTGCTGCACGCAGAGCGCGGCGCGCGCGCGCGTCAAGGAGCAGCTCGAGG
CGCGCGTCGTGTGCGCGGGGCCGGGCGCTTTGCGCTGCGCGCGGCTGCGG
GCCTGTTGTGCGCAGTTTGTTCGACGAGCGCGCGCATGGTGCAATGGATA
CGTGCCGGGGAGGGGCGCGGGTGTGTGCGCCATTTGGTGTGCCTGGCGTG
CGGCACGACTTTGCGGTGTGTCGCAATCGCGGTACGTCGCAATCAGGCGT
TCCGCAACGGGCATGTGTGCCTCACATGGCCGGTGATTCCTTCTTGTACG
ACTCGCTCGTGCGTCGGGGCTTGAGTGCGCAACCACGGATCGAGATGCGC
TGTGGCACAAAAAATGAAATCAGGCGCTTGAACACGTCCCCATGCCGCTC
GTGTTCTGAACGTTAGAACACTGCAAATCGACAATGGACTGCGCTTGCTA
TCCGTATGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_2952:767196..768706+

>Gvermi875.t1 ID=Gvermi875.t1|Name=Gvermi875.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=609bp|location=Sequence derived from alignment at ScGOVlb_2952:767196..768706+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCGCGACGTGCGCGTGCTGGGCCTGGGGCTGTCCGCCGTCGACCTGCT
GGCCAAGGTGAACCGCTTCCCGCGCCCCGACGACAAGATCCGCACCGAGG
AGCTGCGCGTGCTGGGCGGCGGCAACGCGGCCAACTCGCTCACCGCGCTG
CGCCGCCTCGGCGTGCCGTGCGTGCTCGCCTCCAAGCTGGGCGACGACAT
GTACGGCCGCGCGGCGCTGCGCGAGCTGAGGCGCGACGGAATCGACACGC
GCTTCGTGCGCGTCAGCGCCGCAACCAACACCGCCCTCACGTACGTCATC
GTCGACAGCACGCACCACACGCGCACGTGCATCTCCACGCCGGCCACCGA
GCCGCTGTTCGAGGCCGACGTCGCCGACCACATGCTGCACGGCGTGCGGC
TGGTCGTGCTGGACGGGCGCCACACGCTGGCCGCCATCCGCCTGGCGCAG
CTCGCCGCCGAGCGCCGCATCCCCGTGCTGCTCGACATTGAGCGCCAGCG
CCCGCACATTGAGCGGCTGCTGCCGTACGCCGACTACATTGTCACCAACG
CCACGTACCCGTCGAACACTGCAAATCGACAATGGACTGCGCTTGCTATC
CGTATGTAG
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