Gvermi8717.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi8717.t1
Unique Name	Gvermi8717.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	378

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_4610	contig	ScGOVlb_4610:2..1133 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi8717	Gvermi8717	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_4610 2..1133 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8717.t1.CDS1	Gvermi8717.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_4610 2..1133 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8717.t1.exon1	Gvermi8717.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_4610 2..1133 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8717.t1	Gvermi8717.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_4610 2..1133 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_4610:2..1133+
coding sequence from alignment at ScGOVlb_4610:2..1133+

mRNA sequence

>Gvermi8717.t1 ID=Gvermi8717.t1|Name=Gvermi8717.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=378bp
GGTSTGNVGLSTGVATAGVSGNVVLSTGTAATAASGDITLSVGNSNTAGG
SVSIEAGDVTSASASPGGSIELFAGSGNSGSGGNVLVSAGSSNTGSSGDI
QLSTLVAGTASGAVTVNTGASSSGDSGAFTVTTGAASCGAGGSIALSVGS
GDTGTGGAISLAAGSTSATGGGAITLTSGQGNTAASGNIELKTSTGDITG
SLIFSTGAADAGDSGEILLSTGAASGGSAGDITLSIASGNTGDGGAVLLT
AGQTSALAGVGGKVQVTAGSGTGNNGVGGDIVLSAGSGNSGTGGLISLTT
GASAQVASGAIQLATSGAKTTGAFTVSTGIATSGASGAFTVTTGAASVGS
AGAISFTVGETNSGAGGDITLTSGDTVX

spliced messenger RNA

>Gvermi8717.t1 ID=Gvermi8717.t1|Name=Gvermi8717.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1132bp|location=Sequence derived from alignment at ScGOVlb_4610:2..1133+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
GGCGGCACAAGCACTGGCAACGTGGGCCTAAGCACTGGTGTGGCCACTGC
TGGCGTGAGTGGCAATGTAGTGCTCAGTACTGGTACTGCCGCCACAGCTG
CATCTGGAGACATCACGCTCAGTGTTGGTAATAGTAACACCGCTGGTGGG
TCTGTTAGTATTGAGGCTGGTGATGTTACATCGGCTTCAGCCTCTCCCGG
CGGTAGCATTGAACTCTTCGCCGGCTCTGGAAACTCCGGTTCCGGTGGAA
ACGTTCTAGTATCTGCTGGTTCAAGTAACACTGGGTCGAGTGGAGACATT
CAGTTGTCTACCTTGGTTGCAGGAACAGCTTCCGGTGCTGTGACTGTGAA
CACAGGTGCTTCATCATCAGGAGATTCCGGCGCATTCACTGTAACTACCG
GTGCTGCATCATGTGGCGCTGGTGGATCTATCGCACTTTCCGTAGGAAGT
GGCGACACTGGCACAGGAGGAGCAATTTCACTTGCTGCGGGAAGCACATC
AGCCACTGGAGGAGGCGCGATCACACTCACGAGCGGACAAGGCAACACTG
CTGCTAGTGGCAACATTGAGCTGAAAACCTCTACTGGTGACATCACGGGA
TCTTTGATTTTCAGCACTGGAGCTGCTGATGCAGGTGATAGCGGAGAGAT
TCTGCTCAGCACTGGAGCTGCATCTGGTGGAAGTGCTGGTGACATCACGT
TGTCGATTGCAAGTGGAAATACTGGAGACGGGGGAGCTGTACTACTCACA
GCAGGTCAAACCTCAGCTCTCGCCGGAGTTGGTGGCAAGGTTCAAGTTAC
TGCCGGGTCTGGAACAGGAAACAACGGTGTCGGTGGTGACATTGTCCTTT
CTGCTGGAAGCGGAAACTCTGGCACTGGTGGTTTGATTTCACTGACGACG
GGCGCAAGTGCTCAGGTGGCAAGTGGTGCGATTCAGCTGGCTACGTCTGG
AGCCAAAACAACTGGTGCATTTACTGTTTCTACAGGCATTGCAACTAGCG
GAGCAAGTGGTGCATTCACTGTGACCACTGGAGCTGCTTCGGTTGGCAGT
GCTGGCGCTATCTCGTTCACTGTCGGCGAAACCAACTCTGGTGCAGGGGG
AGATATCACACTCACTTCTGGAGACACAGTAG

protein sequence of Gvermi8717.t1

>Gvermi8717.t1 ID=Gvermi8717.t1|Name=Gvermi8717.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=378bp
GGTSTGNVGLSTGVATAGVSGNVVLSTGTAATAASGDITLSVGNSNTAGG
SVSIEAGDVTSASASPGGSIELFAGSGNSGSGGNVLVSAGSSNTGSSGDI
QLSTLVAGTASGAVTVNTGASSSGDSGAFTVTTGAASCGAGGSIALSVGS
GDTGTGGAISLAAGSTSATGGGAITLTSGQGNTAASGNIELKTSTGDITG
SLIFSTGAADAGDSGEILLSTGAASGGSAGDITLSIASGNTGDGGAVLLT
AGQTSALAGVGGKVQVTAGSGTGNNGVGGDIVLSAGSGNSGTGGLISLTT
GASAQVASGAIQLATSGAKTTGAFTVSTGIATSGASGAFTVTTGAASVGS
AGAISFTVGETNSGAGGDITLTSGDTVX

mRNA from alignment at ScGOVlb_4610:2..1133+

Legend: CDSpolypeptideexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi8717.t1 ID=Gvermi8717.t1|Name=Gvermi8717.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1132bp|location=Sequence derived from alignment at ScGOVlb_4610:2..1133+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
GGCGGCACAAGCACTGGCAACGTGGGCCTAAGCACTGGTGTGGCCACTGC
TGGCGTGAGTGGCAATGTAGTGCTCAGTACTGGTACTGCCGCCACAGCTG
CATCTGGAGACATCACGCTCAGTGTTGGTAATAGTAACACCGCTGGTGGG
TCTGTTAGTATTGAGGCTGGTGATGTTACATCGGCTTCAGCCTCTCCCGG
CGGTAGCATTGAACTCTTCGCCGGCTCTGGAAACTCCGGTTCCGGTGGAA
ACGTTCTAGTATCTGCTGGTTCAAGTAACACTGGGTCGAGTGGAGACATT
CAGTTGTCTACCTTGGTTGCAGGAACAGCTTCCGGTGCTGTGACTGTGAA
CACAGGTGCTTCATCATCAGGAGATTCCGGCGCATTCACTGTAACTACCG
GTGCTGCATCATGTGGCGCTGGTGGATCTATCGCACTTTCCGTAGGAAGT
GGCGACACTGGCACAGGAGGAGCAATTTCACTTGCTGCGGGAAGCACATC
AGCCACTGGAGGAGGCGCGATCACACTCACGAGCGGACAAGGCAACACTG
CTGCTAGTGGCAACATTGAGCTGAAAACCTCTACTGGTGACATCACGGGA
TCTTTGATTTTCAGCACTGGAGCTGCTGATGCAGGTGATAGCGGAGAGAT
TCTGCTCAGCACTGGAGCTGCATCTGGTGGAAGTGCTGGTGACATCACGT
TGTCGATTGCAAGTGGAAATACTGGAGACGGGGGAGCTGTACTACTCACA
GCAGGTCAAACCTCAGCTCTCGCCGGAGTTGGTGGCAAGGTTCAAGTTAC
TGCCGGGTCTGGAACAGGAAACAACGGTGTCGGTGGTGACATTGTCCTTT
CTGCTGGAAGCGGAAACTCTGGCACTGGTGGTTTGATTTCACTGACGACG
GGCGCAAGTGCTCAGGTGGCAAGTGGTGCGATTCAGCTGGCTACGTCTGG
AGCCAAAACAACTGGTGCATTTACTGTTTCTACAGGCATTGCAACTAGCG
GAGCAAGTGGTGCATTCACTGTGACCACTGGAGCTGCTTCGGTTGGCAGT
GCTGGCGCTATCTCGTTCACTGTCGGCGAAACCAACTCTGGTGCAGGGGG
AGATATCACACTCACTTCTGGAGACACAGTAG

Coding sequence (CDS) from alignment at ScGOVlb_4610:2..1133+

>Gvermi8717.t1 ID=Gvermi8717.t1|Name=Gvermi8717.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1132bp|location=Sequence derived from alignment at ScGOVlb_4610:2..1133+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
GGCGGCACAAGCACTGGCAACGTGGGCCTAAGCACTGGTGTGGCCACTGC
TGGCGTGAGTGGCAATGTAGTGCTCAGTACTGGTACTGCCGCCACAGCTG
CATCTGGAGACATCACGCTCAGTGTTGGTAATAGTAACACCGCTGGTGGG
TCTGTTAGTATTGAGGCTGGTGATGTTACATCGGCTTCAGCCTCTCCCGG
CGGTAGCATTGAACTCTTCGCCGGCTCTGGAAACTCCGGTTCCGGTGGAA
ACGTTCTAGTATCTGCTGGTTCAAGTAACACTGGGTCGAGTGGAGACATT
CAGTTGTCTACCTTGGTTGCAGGAACAGCTTCCGGTGCTGTGACTGTGAA
CACAGGTGCTTCATCATCAGGAGATTCCGGCGCATTCACTGTAACTACCG
GTGCTGCATCATGTGGCGCTGGTGGATCTATCGCACTTTCCGTAGGAAGT
GGCGACACTGGCACAGGAGGAGCAATTTCACTTGCTGCGGGAAGCACATC
AGCCACTGGAGGAGGCGCGATCACACTCACGAGCGGACAAGGCAACACTG
CTGCTAGTGGCAACATTGAGCTGAAAACCTCTACTGGTGACATCACGGGA
TCTTTGATTTTCAGCACTGGAGCTGCTGATGCAGGTGATAGCGGAGAGAT
TCTGCTCAGCACTGGAGCTGCATCTGGTGGAAGTGCTGGTGACATCACGT
TGTCGATTGCAAGTGGAAATACTGGAGACGGGGGAGCTGTACTACTCACA
GCAGGTCAAACCTCAGCTCTCGCCGGAGTTGGTGGCAAGGTTCAAGTTAC
TGCCGGGTCTGGAACAGGAAACAACGGTGTCGGTGGTGACATTGTCCTTT
CTGCTGGAAGCGGAAACTCTGGCACTGGTGGTTTGATTTCACTGACGACG
GGCGCAAGTGCTCAGGTGGCAAGTGGTGCGATTCAGCTGGCTACGTCTGG
AGCCAAAACAACTGGTGCATTTACTGTTTCTACAGGCATTGCAACTAGCG
GAGCAAGTGGTGCATTCACTGTGACCACTGGAGCTGCTTCGGTTGGCAGT
GCTGGCGCTATCTCGTTCACTGTCGGCGAAACCAACTCTGGTGCAGGGGG
AGATATCACACTCACTTCTGGAGACACAGTAG