Gvermi866.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi866.t1
Unique NameGvermi866.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length147
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:731564..732004 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5825.PCHAS_051210
PFAMsDHHC
Max annot lvl422676|Aconoidasida
KEGG koko:K20028
Evalue2.32e-11
EggNOG OGsCOG5273@1|root,KOG1315@2759|Eukaryota,3YA3T@5794|Apicomplexa,3KCAM@422676|Aconoidasida,3YXIN@5819|Haemosporida
EC2.3.1.225
DescriptionBelongs to the DHHC palmitoyltransferase family
COG categoryI
BRITEko00000,ko01000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi866Gvermi866Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2952 731564..732004 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi866.t1.stop1Gvermi866.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2952 731564..731566 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi866.t1.CDS1Gvermi866.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 731564..732004 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi866.t1.exon1Gvermi866.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 731564..732004 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi866.t1.start1Gvermi866.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2952 732002..732004 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi866.t1Gvermi866.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2952 731564..732004 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi866.t1 ID=Gvermi866.t1|Name=Gvermi866.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=147bp
LRYDHHCPWLATCIGLLNAKYFLLFLLYASVASFATAALHLRFLLNTPPR
IRSTALLYVAVVSPVSLSASLVTAVATAALFVWNLWLAMHNRTALEHMLL
SQRKPVVSYSASVTRNLRHLLGWNPLLWLLPLPQSRCPPAATKSHA*
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spliced messenger RNA

>Gvermi866.t1 ID=Gvermi866.t1|Name=Gvermi866.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=441bp|location=Sequence derived from alignment at ScGOVlb_2952:731564..732004- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGCGCTACGACCACCACTGCCCGTGGCTGGCCACCTGCATCGGCCTGCT
CAACGCCAAGTACTTCCTGCTCTTCCTGCTGTACGCCAGCGTCGCCAGCT
TCGCCACCGCCGCCCTGCACCTGCGCTTCCTCCTCAACACCCCCCCGCGC
ATCCGCTCCACCGCCCTGCTCTACGTAGCCGTCGTGTCGCCCGTGTCGCT
CTCCGCCTCCCTCGTCACCGCCGTCGCCACCGCCGCCCTCTTCGTGTGGA
ACCTGTGGCTCGCCATGCACAACCGCACAGCCCTGGAGCACATGCTGCTG
TCGCAGCGCAAGCCCGTCGTGTCGTATTCCGCCAGCGTCACCCGCAACCT
GCGCCACCTCCTGGGATGGAATCCGCTCCTGTGGCTCCTCCCGCTCCCGC
AGTCCAGGTGCCCCCCCGCCGCCACCAAGAGCCACGCTTGA
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protein sequence of Gvermi866.t1

>Gvermi866.t1 ID=Gvermi866.t1|Name=Gvermi866.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=147bp
LRYDHHCPWLATCIGLLNAKYFLLFLLYASVASFATAALHLRFLLNTPPR
IRSTALLYVAVVSPVSLSASLVTAVATAALFVWNLWLAMHNRTALEHMLL
SQRKPVVSYSASVTRNLRHLLGWNPLLWLLPLPQSRCPPAATKSHA*
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mRNA from alignment at ScGOVlb_2952:731564..732004-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi866.t1 ID=Gvermi866.t1|Name=Gvermi866.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=441bp|location=Sequence derived from alignment at ScGOVlb_2952:731564..732004- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCGCTACGACCACCACTGCCCGTGGCTGGCCACCTGCATCGGCCTGCT
CAACGCCAAGTACTTCCTGCTCTTCCTGCTGTACGCCAGCGTCGCCAGCT
TCGCCACCGCCGCCCTGCACCTGCGCTTCCTCCTCAACACCCCCCCGCGC
ATCCGCTCCACCGCCCTGCTCTACGTAGCCGTCGTGTCGCCCGTGTCGCT
CTCCGCCTCCCTCGTCACCGCCGTCGCCACCGCCGCCCTCTTCGTGTGGA
ACCTGTGGCTCGCCATGCACAACCGCACAGCCCTGGAGCACATGCTGCTG
TCGCAGCGCAAGCCCGTCGTGTCGTATTCCGCCAGCGTCACCCGCAACCT
GCGCCACCTCCTGGGATGGAATCCGCTCCTGTGGCTCCTCCCGCTCCCGC
AGTCCAGGTGCCCCCCCGCCGCCACCAAGAGCCACGCTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_2952:731564..732004-

>Gvermi866.t1 ID=Gvermi866.t1|Name=Gvermi866.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=441bp|location=Sequence derived from alignment at ScGOVlb_2952:731564..732004- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCGCTACGACCACCACTGCCCGTGGCTGGCCACCTGCATCGGCCTGCT
CAACGCCAAGTACTTCCTGCTCTTCCTGCTGTACGCCAGCGTCGCCAGCT
TCGCCACCGCCGCCCTGCACCTGCGCTTCCTCCTCAACACCCCCCCGCGC
ATCCGCTCCACCGCCCTGCTCTACGTAGCCGTCGTGTCGCCCGTGTCGCT
CTCCGCCTCCCTCGTCACCGCCGTCGCCACCGCCGCCCTCTTCGTGTGGA
ACCTGTGGCTCGCCATGCACAACCGCACAGCCCTGGAGCACATGCTGCTG
TCGCAGCGCAAGCCCGTCGTGTCGTATTCCGCCAGCGTCACCCGCAACCT
GCGCCACCTCCTGGGATGGAATCCGCTCCTGTGGCTCCTCCCGCTCCCGC
AGTCCAGGTGCCCCCCCGCCGCCACCAAGAGCCACGCTTGA
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