Gvermi861.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi861.t1
Unique NameGvermi861.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length739
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:684863..687079 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708565.1
PFAMsANTH
Max annot lvl2759|Eukaryota
KEGG koko:K20043,ko:K20044
Evalue6.91e-47
EggNOG OGsKOG0251@1|root,KOG0251@2759|Eukaryota
DescriptionClathrin assembly protein
COG categoryS
BRITEko00000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi861Gvermi861Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2952 684863..687079 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi861.t1.stop1Gvermi861.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2952 684863..684865 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi861.t1.CDS1Gvermi861.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 684863..687079 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi861.t1.exon1Gvermi861.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 684863..687079 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi861.t1.start1Gvermi861.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2952 687077..687079 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi861.t1Gvermi861.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2952 684863..687079 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi861.t1 ID=Gvermi861.t1|Name=Gvermi861.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=739bp
MSYDDYRTGRPPVPSSRPPNPRSSYDSLAGRMNEPPARGSLSRSQSVRDS
SNTSVGRPASSTSAAISNAQAAMATMRGNVNSMTNNSQVDNPYVTNAYAS
TRAPPTANYADVADGMGGGMPTYPSKSNVNFQSKMKDQVRQTMASIKGDD
WKIYCMKATNRENAAPKGKHVRVIMEALRYGGSISNRESPAGGIFYHLRK
RMMQNEWVVVVKALTIFHHIFRDGNEKFVAHIASHYRAMFKMEFFGDSTS
EGLAFSGFIRSYGAYLEQWLTMKAAINFPPKNSREDDQNITNRYGEAPIQ
ELLAVLPILMDTFEALTSIRLEGQARYSPVAMPARSMVLRDLSLLVTSIQ
FGVIRLLELYFQLEIPDATIALDVYKRFVTLITNAKPFFDLAQSLSSRWR
APELGSISFELAESMQEYIDKGPQKEEVKEPQFSDDEQYEPEPEPEPVPE
DYYEPEPEYYSEEEPEIIPPPPRPLTPPSSTSSESSSEEESSSEDEDDDI
DILPSAPEPPPPPKPFDPLRDLLGIESGIGTPAAQAGQTPVPQQNMALQV
YGAGAPMPGMFQQAALENTVDDRVANVKGVMANSGWQNQQRSGFGVDGSN
MQLALYGAHATPQQQAQAQQQMYNTMSMQQQQQLAAYQTMAAYQTMAAQN
QQMAMYQMQHPGMHGMNGMNGMQQMGMAGAYTPVPRGNQAVPVMSSEPIK
APPGNYRVQKGTKPSRVNEDDLAFGPLIDQMKKAGISK*
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spliced messenger RNA

>Gvermi861.t1 ID=Gvermi861.t1|Name=Gvermi861.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2217bp|location=Sequence derived from alignment at ScGOVlb_2952:684863..687079- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTACGATGACTACCGAACCGGACGCCCGCCGGTCCCGTCCAGCCG
TCCTCCAAACCCAAGGAGCTCTTACGATTCTCTTGCCGGGAGAATGAATG
AGCCACCGGCCCGCGGCTCTCTTTCGCGCTCCCAGTCTGTCCGCGACTCC
TCCAACACTTCCGTCGGTCGCCCCGCCTCCTCCACGTCAGCAGCTATCTC
CAACGCTCAGGCTGCTATGGCCACCATGCGCGGCAACGTCAACAGTATGA
CTAACAACAGCCAAGTCGACAACCCTTACGTCACTAACGCTTACGCCTCA
ACTCGGGCGCCACCCACCGCAAACTATGCTGATGTGGCCGATGGTATGGG
AGGGGGCATGCCCACATATCCGTCAAAGAGCAACGTTAACTTTCAGAGCA
AGATGAAGGATCAGGTGCGTCAGACCATGGCTAGCATTAAGGGTGACGAT
TGGAAGATATACTGCATGAAAGCTACTAATCGTGAGAACGCTGCTCCCAA
AGGAAAGCACGTTCGTGTTATAATGGAGGCGCTTCGCTACGGTGGAAGCA
TCTCCAATCGGGAAAGTCCCGCAGGTGGAATCTTTTATCATCTTCGCAAG
CGAATGATGCAAAACGAATGGGTCGTCGTTGTGAAGGCACTGACTATATT
TCACCACATTTTCCGCGACGGGAACGAGAAGTTTGTTGCACACATAGCCA
GCCACTACCGCGCAATGTTCAAAATGGAGTTTTTTGGCGATAGCACTTCA
GAGGGCCTCGCTTTCAGTGGCTTCATTCGCTCTTATGGTGCTTACCTGGA
GCAATGGCTCACAATGAAAGCTGCAATAAATTTTCCCCCGAAGAATTCCA
GAGAAGATGATCAGAATATAACCAATCGCTATGGAGAAGCACCTATTCAG
GAACTTTTAGCTGTGCTTCCAATCCTCATGGATACGTTTGAAGCGCTCAC
CTCGATTCGATTGGAAGGCCAAGCCCGTTATTCTCCGGTAGCAATGCCAG
CACGCTCAATGGTTTTGCGCGATCTGTCCCTCCTCGTTACTTCAATACAG
TTCGGCGTTATCCGCCTTCTGGAGTTATATTTTCAACTCGAAATCCCTGA
TGCCACCATCGCTTTGGACGTGTACAAACGATTTGTGACGCTTATTACAA
ACGCAAAACCGTTCTTTGACCTTGCCCAGTCTTTGTCGTCGAGATGGCGA
GCACCTGAATTGGGTTCGATATCTTTTGAACTTGCAGAATCCATGCAGGA
GTACATTGACAAGGGCCCACAAAAAGAGGAAGTCAAAGAGCCTCAGTTTT
CGGATGATGAACAATATGAACCAGAACCGGAACCGGAACCCGTTCCTGAA
GACTATTATGAACCGGAACCCGAGTACTATTCCGAAGAGGAGCCAGAAAT
CATTCCACCTCCGCCTCGTCCCCTAACCCCACCGTCATCTACGTCATCAG
AATCCTCATCCGAAGAAGAATCTTCGTCGGAAGATGAAGACGACGACATT
GACATCCTTCCCTCCGCTCCTGAACCACCACCACCGCCTAAACCGTTCGA
CCCATTGCGAGATCTGTTAGGGATTGAATCTGGAATTGGTACACCTGCTG
CGCAGGCCGGTCAGACACCAGTACCCCAGCAAAATATGGCACTTCAAGTC
TACGGTGCCGGGGCTCCAATGCCTGGCATGTTTCAGCAGGCAGCGTTGGA
GAACACCGTGGACGACCGTGTCGCTAATGTAAAGGGCGTCATGGCCAACT
CTGGATGGCAAAACCAGCAGAGAAGCGGGTTCGGGGTTGACGGTTCCAAC
ATGCAGTTAGCGCTATACGGCGCCCACGCGACTCCTCAACAACAAGCCCA
GGCTCAGCAGCAAATGTACAATACAATGTCTATGCAACAGCAGCAACAAC
TAGCTGCGTATCAGACTATGGCTGCATATCAAACAATGGCTGCACAGAAT
CAACAAATGGCAATGTACCAGATGCAACACCCGGGCATGCACGGCATGAA
CGGCATGAACGGCATGCAGCAGATGGGCATGGCAGGGGCATATACCCCCG
TGCCGCGCGGAAATCAGGCGGTACCAGTGATGTCATCAGAACCGATCAAG
GCGCCGCCTGGAAATTATCGTGTCCAGAAAGGCACGAAACCTTCACGAGT
GAATGAAGATGATCTTGCATTTGGGCCACTGATTGATCAGATGAAGAAGG
CCGGGATTAGCAAGTAG
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protein sequence of Gvermi861.t1

>Gvermi861.t1 ID=Gvermi861.t1|Name=Gvermi861.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=739bp
MSYDDYRTGRPPVPSSRPPNPRSSYDSLAGRMNEPPARGSLSRSQSVRDS
SNTSVGRPASSTSAAISNAQAAMATMRGNVNSMTNNSQVDNPYVTNAYAS
TRAPPTANYADVADGMGGGMPTYPSKSNVNFQSKMKDQVRQTMASIKGDD
WKIYCMKATNRENAAPKGKHVRVIMEALRYGGSISNRESPAGGIFYHLRK
RMMQNEWVVVVKALTIFHHIFRDGNEKFVAHIASHYRAMFKMEFFGDSTS
EGLAFSGFIRSYGAYLEQWLTMKAAINFPPKNSREDDQNITNRYGEAPIQ
ELLAVLPILMDTFEALTSIRLEGQARYSPVAMPARSMVLRDLSLLVTSIQ
FGVIRLLELYFQLEIPDATIALDVYKRFVTLITNAKPFFDLAQSLSSRWR
APELGSISFELAESMQEYIDKGPQKEEVKEPQFSDDEQYEPEPEPEPVPE
DYYEPEPEYYSEEEPEIIPPPPRPLTPPSSTSSESSSEEESSSEDEDDDI
DILPSAPEPPPPPKPFDPLRDLLGIESGIGTPAAQAGQTPVPQQNMALQV
YGAGAPMPGMFQQAALENTVDDRVANVKGVMANSGWQNQQRSGFGVDGSN
MQLALYGAHATPQQQAQAQQQMYNTMSMQQQQQLAAYQTMAAYQTMAAQN
QQMAMYQMQHPGMHGMNGMNGMQQMGMAGAYTPVPRGNQAVPVMSSEPIK
APPGNYRVQKGTKPSRVNEDDLAFGPLIDQMKKAGISK*
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mRNA from alignment at ScGOVlb_2952:684863..687079-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi861.t1 ID=Gvermi861.t1|Name=Gvermi861.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2217bp|location=Sequence derived from alignment at ScGOVlb_2952:684863..687079- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGTACGATGACTACCGAACCGGACGCCCGCCGGTCCCGTCCAGCCG
TCCTCCAAACCCAAGGAGCTCTTACGATTCTCTTGCCGGGAGAATGAATG
AGCCACCGGCCCGCGGCTCTCTTTCGCGCTCCCAGTCTGTCCGCGACTCC
TCCAACACTTCCGTCGGTCGCCCCGCCTCCTCCACGTCAGCAGCTATCTC
CAACGCTCAGGCTGCTATGGCCACCATGCGCGGCAACGTCAACAGTATGA
CTAACAACAGCCAAGTCGACAACCCTTACGTCACTAACGCTTACGCCTCA
ACTCGGGCGCCACCCACCGCAAACTATGCTGATGTGGCCGATGGTATGGG
AGGGGGCATGCCCACATATCCGTCAAAGAGCAACGTTAACTTTCAGAGCA
AGATGAAGGATCAGGTGCGTCAGACCATGGCTAGCATTAAGGGTGACGAT
TGGAAGATATACTGCATGAAAGCTACTAATCGTGAGAACGCTGCTCCCAA
AGGAAAGCACGTTCGTGTTATAATGGAGGCGCTTCGCTACGGTGGAAGCA
TCTCCAATCGGGAAAGTCCCGCAGGTGGAATCTTTTATCATCTTCGCAAG
CGAATGATGCAAAACGAATGGGTCGTCGTTGTGAAGGCACTGACTATATT
TCACCACATTTTCCGCGACGGGAACGAGAAGTTTGTTGCACACATAGCCA
GCCACTACCGCGCAATGTTCAAAATGGAGTTTTTTGGCGATAGCACTTCA
GAGGGCCTCGCTTTCAGTGGCTTCATTCGCTCTTATGGTGCTTACCTGGA
GCAATGGCTCACAATGAAAGCTGCAATAAATTTTCCCCCGAAGAATTCCA
GAGAAGATGATCAGAATATAACCAATCGCTATGGAGAAGCACCTATTCAG
GAACTTTTAGCTGTGCTTCCAATCCTCATGGATACGTTTGAAGCGCTCAC
CTCGATTCGATTGGAAGGCCAAGCCCGTTATTCTCCGGTAGCAATGCCAG
CACGCTCAATGGTTTTGCGCGATCTGTCCCTCCTCGTTACTTCAATACAG
TTCGGCGTTATCCGCCTTCTGGAGTTATATTTTCAACTCGAAATCCCTGA
TGCCACCATCGCTTTGGACGTGTACAAACGATTTGTGACGCTTATTACAA
ACGCAAAACCGTTCTTTGACCTTGCCCAGTCTTTGTCGTCGAGATGGCGA
GCACCTGAATTGGGTTCGATATCTTTTGAACTTGCAGAATCCATGCAGGA
GTACATTGACAAGGGCCCACAAAAAGAGGAAGTCAAAGAGCCTCAGTTTT
CGGATGATGAACAATATGAACCAGAACCGGAACCGGAACCCGTTCCTGAA
GACTATTATGAACCGGAACCCGAGTACTATTCCGAAGAGGAGCCAGAAAT
CATTCCACCTCCGCCTCGTCCCCTAACCCCACCGTCATCTACGTCATCAG
AATCCTCATCCGAAGAAGAATCTTCGTCGGAAGATGAAGACGACGACATT
GACATCCTTCCCTCCGCTCCTGAACCACCACCACCGCCTAAACCGTTCGA
CCCATTGCGAGATCTGTTAGGGATTGAATCTGGAATTGGTACACCTGCTG
CGCAGGCCGGTCAGACACCAGTACCCCAGCAAAATATGGCACTTCAAGTC
TACGGTGCCGGGGCTCCAATGCCTGGCATGTTTCAGCAGGCAGCGTTGGA
GAACACCGTGGACGACCGTGTCGCTAATGTAAAGGGCGTCATGGCCAACT
CTGGATGGCAAAACCAGCAGAGAAGCGGGTTCGGGGTTGACGGTTCCAAC
ATGCAGTTAGCGCTATACGGCGCCCACGCGACTCCTCAACAACAAGCCCA
GGCTCAGCAGCAAATGTACAATACAATGTCTATGCAACAGCAGCAACAAC
TAGCTGCGTATCAGACTATGGCTGCATATCAAACAATGGCTGCACAGAAT
CAACAAATGGCAATGTACCAGATGCAACACCCGGGCATGCACGGCATGAA
CGGCATGAACGGCATGCAGCAGATGGGCATGGCAGGGGCATATACCCCCG
TGCCGCGCGGAAATCAGGCGGTACCAGTGATGTCATCAGAACCGATCAAG
GCGCCGCCTGGAAATTATCGTGTCCAGAAAGGCACGAAACCTTCACGAGT
GAATGAAGATGATCTTGCATTTGGGCCACTGATTGATCAGATGAAGAAGG
CCGGGATTAGCAAGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_2952:684863..687079-

>Gvermi861.t1 ID=Gvermi861.t1|Name=Gvermi861.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2217bp|location=Sequence derived from alignment at ScGOVlb_2952:684863..687079- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGTACGATGACTACCGAACCGGACGCCCGCCGGTCCCGTCCAGCCG
TCCTCCAAACCCAAGGAGCTCTTACGATTCTCTTGCCGGGAGAATGAATG
AGCCACCGGCCCGCGGCTCTCTTTCGCGCTCCCAGTCTGTCCGCGACTCC
TCCAACACTTCCGTCGGTCGCCCCGCCTCCTCCACGTCAGCAGCTATCTC
CAACGCTCAGGCTGCTATGGCCACCATGCGCGGCAACGTCAACAGTATGA
CTAACAACAGCCAAGTCGACAACCCTTACGTCACTAACGCTTACGCCTCA
ACTCGGGCGCCACCCACCGCAAACTATGCTGATGTGGCCGATGGTATGGG
AGGGGGCATGCCCACATATCCGTCAAAGAGCAACGTTAACTTTCAGAGCA
AGATGAAGGATCAGGTGCGTCAGACCATGGCTAGCATTAAGGGTGACGAT
TGGAAGATATACTGCATGAAAGCTACTAATCGTGAGAACGCTGCTCCCAA
AGGAAAGCACGTTCGTGTTATAATGGAGGCGCTTCGCTACGGTGGAAGCA
TCTCCAATCGGGAAAGTCCCGCAGGTGGAATCTTTTATCATCTTCGCAAG
CGAATGATGCAAAACGAATGGGTCGTCGTTGTGAAGGCACTGACTATATT
TCACCACATTTTCCGCGACGGGAACGAGAAGTTTGTTGCACACATAGCCA
GCCACTACCGCGCAATGTTCAAAATGGAGTTTTTTGGCGATAGCACTTCA
GAGGGCCTCGCTTTCAGTGGCTTCATTCGCTCTTATGGTGCTTACCTGGA
GCAATGGCTCACAATGAAAGCTGCAATAAATTTTCCCCCGAAGAATTCCA
GAGAAGATGATCAGAATATAACCAATCGCTATGGAGAAGCACCTATTCAG
GAACTTTTAGCTGTGCTTCCAATCCTCATGGATACGTTTGAAGCGCTCAC
CTCGATTCGATTGGAAGGCCAAGCCCGTTATTCTCCGGTAGCAATGCCAG
CACGCTCAATGGTTTTGCGCGATCTGTCCCTCCTCGTTACTTCAATACAG
TTCGGCGTTATCCGCCTTCTGGAGTTATATTTTCAACTCGAAATCCCTGA
TGCCACCATCGCTTTGGACGTGTACAAACGATTTGTGACGCTTATTACAA
ACGCAAAACCGTTCTTTGACCTTGCCCAGTCTTTGTCGTCGAGATGGCGA
GCACCTGAATTGGGTTCGATATCTTTTGAACTTGCAGAATCCATGCAGGA
GTACATTGACAAGGGCCCACAAAAAGAGGAAGTCAAAGAGCCTCAGTTTT
CGGATGATGAACAATATGAACCAGAACCGGAACCGGAACCCGTTCCTGAA
GACTATTATGAACCGGAACCCGAGTACTATTCCGAAGAGGAGCCAGAAAT
CATTCCACCTCCGCCTCGTCCCCTAACCCCACCGTCATCTACGTCATCAG
AATCCTCATCCGAAGAAGAATCTTCGTCGGAAGATGAAGACGACGACATT
GACATCCTTCCCTCCGCTCCTGAACCACCACCACCGCCTAAACCGTTCGA
CCCATTGCGAGATCTGTTAGGGATTGAATCTGGAATTGGTACACCTGCTG
CGCAGGCCGGTCAGACACCAGTACCCCAGCAAAATATGGCACTTCAAGTC
TACGGTGCCGGGGCTCCAATGCCTGGCATGTTTCAGCAGGCAGCGTTGGA
GAACACCGTGGACGACCGTGTCGCTAATGTAAAGGGCGTCATGGCCAACT
CTGGATGGCAAAACCAGCAGAGAAGCGGGTTCGGGGTTGACGGTTCCAAC
ATGCAGTTAGCGCTATACGGCGCCCACGCGACTCCTCAACAACAAGCCCA
GGCTCAGCAGCAAATGTACAATACAATGTCTATGCAACAGCAGCAACAAC
TAGCTGCGTATCAGACTATGGCTGCATATCAAACAATGGCTGCACAGAAT
CAACAAATGGCAATGTACCAGATGCAACACCCGGGCATGCACGGCATGAA
CGGCATGAACGGCATGCAGCAGATGGGCATGGCAGGGGCATATACCCCCG
TGCCGCGCGGAAATCAGGCGGTACCAGTGATGTCATCAGAACCGATCAAG
GCGCCGCCTGGAAATTATCGTGTCCAGAAAGGCACGAAACCTTCACGAGT
GAATGAAGATGATCTTGCATTTGGGCCACTGATTGATCAGATGAAGAAGG
CCGGGATTAGCAAGTAG
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