Gvermi8216.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8216.t1
Unique NameGvermi8216.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length223
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:1610204..1611005 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8216Gvermi8216Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 1601793..1611005 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8216.t1Gvermi8216.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 1610204..1611005 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8216.t1.start1Gvermi8216.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 1610204..1610206 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8216.t1.CDS1Gvermi8216.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 1610204..1610475 +
Gvermi8216.t1.CDS2Gvermi8216.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 1610609..1611005 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8216.t1.exon1Gvermi8216.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 1610204..1610475 +
Gvermi8216.t1.exon2Gvermi8216.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 1610609..1611005 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8216.t1.intron1Gvermi8216.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 1610476..1610608 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8216.t1.stop1Gvermi8216.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 1611003..1611005 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8216.t1 ID=Gvermi8216.t1|Name=Gvermi8216.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=223bp
LERVHFEYCSDDCGASCCGFQFRPEDEGLESEVLGALDSKAVSRQELESF
KSACTSPPVQIQVVAKSGTADESTVGTSAMVVAISEYLSPRGVICPLHLK
GTAKKIYEELSSSNLYVDASKLWQMLRARPYNASQKCGHLNAFFSARCKE
KKENIEQFGARLCTQPLTFPEPVFETVPMNRLIDGLLHSLQSQAYIISES
YDEVVSKTSLSTRSAKLRPERV*
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spliced messenger RNA

>Gvermi8216.t1 ID=Gvermi8216.t1|Name=Gvermi8216.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=669bp|location=Sequence derived from alignment at ScGOVlb_24226:1610204..1611005+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ctggagcgtgtgcacttcGAGTATTGCTCAGACGATTGCGGGGCTTCGTG
CTGCGGTTTCCAATTTCGCCCAGAAGATGAAGGTCTGGAGTCTGAGGTGC
TGGGTGCTCTTGACAGCAAGGCCGTTTCCCGTCAAGAGTTGGAGAGTTTC
AAGTCCGCCTGTACATCGCCGCCAGTGCAGATCCAGGTTGTTGCAAAGAG
TGGAACCGCTGATGAATCCACCGTTGGTACTTCTGCCATGGTAGTGGCGA
TTTCCGAGTATCTGTCGCCGAGAGGCGTTATATGTCCGTTGCATTTGAAG
GGCACGGCGAAGAAGATCTATGAAGAACTTTCGTCGTCCAATCTGTATGT
GGATGCCAGTAAGCTCTGGCAGATGCTGAGAGCTCGGCCCTACAATGCGA
GTCAGAAATGTGGACATCTGAACGCGTTCTTCTCTGCTAGGTGCAAGGAG
AAGAAGGAGAACATTGAGCAGTTTGGTGCTCGGTTATGTACCCAACCTTT
AACTTTTCCGGAACCGGTATTTGAGACGGTGCCAATGAACCGTCTCATCG
ATGGCCTACTCCACTCGCTCCAGTCGCAAGCTTACATTATCAGCGAAAGC
TATGATGAAGTCGTGTCCAAAACGTCTTTATCCACCAGGTCTGCCAAGTT
ACGTCCTGAGAGGGTCTAG
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protein sequence of Gvermi8216.t1

>Gvermi8216.t1 ID=Gvermi8216.t1|Name=Gvermi8216.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=223bp
LERVHFEYCSDDCGASCCGFQFRPEDEGLESEVLGALDSKAVSRQELESF
KSACTSPPVQIQVVAKSGTADESTVGTSAMVVAISEYLSPRGVICPLHLK
GTAKKIYEELSSSNLYVDASKLWQMLRARPYNASQKCGHLNAFFSARCKE
KKENIEQFGARLCTQPLTFPEPVFETVPMNRLIDGLLHSLQSQAYIISES
YDEVVSKTSLSTRSAKLRPERV*
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mRNA from alignment at ScGOVlb_24226:1610204..1611005+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8216.t1 ID=Gvermi8216.t1|Name=Gvermi8216.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=802bp|location=Sequence derived from alignment at ScGOVlb_24226:1610204..1611005+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ctggagcgtgtgcacttcGAGTATTGCTCAGACGATTGCGGGGCTTCGTG
CTGCGGTTTCCAATTTCGCCCAGAAGATGAAGGTCTGGAGTCTGAGGTGC
TGGGTGCTCTTGACAGCAAGGCCGTTTCCCGTCAAGAGTTGGAGAGTTTC
AAGTCCGCCTGTACATCGCCGCCAGTGCAGATCCAGGTTGTTGCAAAGAG
TGGAACCGCTGATGAATCCACCGTTGGTACTTCTGCCATGGTAGTGGCGA
TTTCCGAGTATCTGTCGCCGAGGTAGGCTCCCAAGTTTTATTTCCGTGAG
TTCGACGAGACCCGCGTTAGCAAGTTTAGAGATGCCAAGTTCCCTGCTGC
GAACATAACTTGGGAAATGATATTTCACGACTTTCCTGTCCGTTCCGCAC
ATCAGAGGCGTTATATGTCCGTTGCATTTGAAGGGCACGGCGAAGAAGAT
CTATGAAGAACTTTCGTCGTCCAATCTGTATGTGGATGCCAGTAAGCTCT
GGCAGATGCTGAGAGCTCGGCCCTACAATGCGAGTCAGAAATGTGGACAT
CTGAACGCGTTCTTCTCTGCTAGGTGCAAGGAGAAGAAGGAGAACATTGA
GCAGTTTGGTGCTCGGTTATGTACCCAACCTTTAACTTTTCCGGAACCGG
TATTTGAGACGGTGCCAATGAACCGTCTCATCGATGGCCTACTCCACTCG
CTCCAGTCGCAAGCTTACATTATCAGCGAAAGCTATGATGAAGTCGTGTC
CAAAACGTCTTTATCCACCAGGTCTGCCAAGTTACGTCCTGAGAGGGTCT
AG
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Coding sequence (CDS) from alignment at ScGOVlb_24226:1610204..1611005+

>Gvermi8216.t1 ID=Gvermi8216.t1|Name=Gvermi8216.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=669bp|location=Sequence derived from alignment at ScGOVlb_24226:1610204..1611005+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ctggagcgtgtgcacttcGAGTATTGCTCAGACGATTGCGGGGCTTCGTG
CTGCGGTTTCCAATTTCGCCCAGAAGATGAAGGTCTGGAGTCTGAGGTGC
TGGGTGCTCTTGACAGCAAGGCCGTTTCCCGTCAAGAGTTGGAGAGTTTC
AAGTCCGCCTGTACATCGCCGCCAGTGCAGATCCAGGTTGTTGCAAAGAG
TGGAACCGCTGATGAATCCACCGTTGGTACTTCTGCCATGGTAGTGGCGA
TTTCCGAGTATCTGTCGCCGAGAGGCGTTATATGTCCGTTGCATTTGAAG
GGCACGGCGAAGAAGATCTATGAAGAACTTTCGTCGTCCAATCTGTATGT
GGATGCCAGTAAGCTCTGGCAGATGCTGAGAGCTCGGCCCTACAATGCGA
GTCAGAAATGTGGACATCTGAACGCGTTCTTCTCTGCTAGGTGCAAGGAG
AAGAAGGAGAACATTGAGCAGTTTGGTGCTCGGTTATGTACCCAACCTTT
AACTTTTCCGGAACCGGTATTTGAGACGGTGCCAATGAACCGTCTCATCG
ATGGCCTACTCCACTCGCTCCAGTCGCAAGCTTACATTATCAGCGAAAGC
TATGATGAAGTCGTGTCCAAAACGTCTTTATCCACCAGGTCTGCCAAGTT
ACGTCCTGAGAGGGTCTAG
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