Gvermi8212.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8212.t1
Unique NameGvermi8212.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length331
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:1582501..1586528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CME147CT
PFAMsTPT
Max annot lvl2759|Eukaryota
KEGG koko:K15280
KEGG TC2.A.7
Evalue1.69e-18
EggNOG OGsCOG0697@1|root,KOG1443@2759|Eukaryota
DescriptionUDP-glucose transmembrane transport
COG categoryEG
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8212Gvermi8212Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 1582501..1586528 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8212.t1Gvermi8212.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 1582501..1586528 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8212.t1.start1Gvermi8212.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 1582501..1582503 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8212.t1.CDS1Gvermi8212.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 1582501..1582507 +
Gvermi8212.t1.CDS2Gvermi8212.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 1585168..1585226 +
Gvermi8212.t1.CDS3Gvermi8212.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 1585449..1585522 +
Gvermi8212.t1.CDS4Gvermi8212.t1.CDS4Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 1585676..1586528 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8212.t1.exon1Gvermi8212.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 1582501..1582507 +
Gvermi8212.t1.exon2Gvermi8212.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 1585168..1585226 +
Gvermi8212.t1.exon3Gvermi8212.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 1585449..1585522 +
Gvermi8212.t1.exon4Gvermi8212.t1.exon4Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 1585676..1586528 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8212.t1.intron1Gvermi8212.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 1582508..1585167 +
Gvermi8212.t1.intron2Gvermi8212.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 1585227..1585448 +
Gvermi8212.t1.intron3Gvermi8212.t1.intron3Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 1585523..1585675 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8212.t1.stop1Gvermi8212.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 1586526..1586528 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8212.t1 ID=Gvermi8212.t1|Name=Gvermi8212.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=331bp
MRSPIAAAAAAAAAAAAAAAPQLASLPHMPTPRPAALLRRALLLGLCPAL
VPDQSSARIAAVIGAATAAEIALSNLALNLLSVSFSTLLKAMAPLFVFGC
GLVLGIHRLRLAIVASLLTIAAGLVLAVSAEHKHTSPALAHFLRLGFLAQ
LASALFSAFRWVLTQLFIKHDPLLNHSVARLFNYRPPSKPWSAMQTVRRV
SPFTLCCVLPFVVLLEGPNLFSWFRSASLLQTLTLLALLSVIGAAVFVLL
WAEYELVRVTSSLTVSVAFVVKEMLLMFAATLMFRDRLPWPTCVGFAAVQ
AGVVLYASQSDRRSGERGAGADRRLLRKPP*
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spliced messenger RNA

>Gvermi8212.t1 ID=Gvermi8212.t1|Name=Gvermi8212.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=993bp|location=Sequence derived from alignment at ScGOVlb_24226:1582501..1586528+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGTCACCGATcgccgccgccgccgctgctgccgccgccgctgctgc
cgccgccgcTCCACAACTTGCGAGTCTCCCCCACATGCCGACGCCGCGCC
CCGCCGCGCTCCTGCGCCGCGCCCTGCTCCTTGGCCTGTGCCCTGCGCTG
GTCCCCGATCAAAGCTCCGCCCGCATCGCCGCCGTCATTGGCGCCGCAAC
CGCCGCCGAAATCGCCCTCTCCAACCTCGCCCTCAACCTTTTGTCCGTGT
CCTTCTCCACGCTGCTCAAGGCCATGGCCCCGCTTTTCGTCTTTGGCTGC
GGCCTTGTGCTCGGCATTCACCGCTTGCGCCTCGCCATTGTCGCCTCGCT
CCTCACCATCGCCGCGGGCCTTGTGCTTGCCGTGTCTGCCGAACATAAAC
ATACCAGCCCCGCCCTTGCGCATTTCCTGCGCCTCGGCTTCCTTGCCCAG
CTTGCCTCGGCGCTGTTTTCGGCCTTTCGCTGGGTGCTCACCCAGCTCTT
CATAAAGCATGACCCACTGCTTAACCACTCTGTCGCCAGGCTGTTCAACT
ATCGCCCGCCGTCCAAGCCCTGGTCCGCCATGCAAACCGTGCGCCGCGTG
TCGCCGTTCACCCTGTGTTGCGTGCTGCCCTTTGTCGTCCTGCTGGAGGG
CCCCAACCTTTTCAGCTGGTTTCGGAGTGCCTCCTTGCTGCAAACCCTCA
CGCTGCTTGCGCTGCTGTCCGTCATAGGCGCCGCCGTCTTCGTGCTGCTG
TGGGCCGAGTACGAACTGGTCAGAGTCACCTCATCTCTCACCGTGTCCGT
CGCCTTTGTCGTCAAGGAAATGCTGCTCATGTTTGCCGCCACGCTCATGT
TCCGCGACCGCCTGCCGTGGCCCACGTGCGTGGGCTTCGCCGCCGTGCAG
GCGGGCGTCGTCTTGTATGCCTCGCAGAGCGACCGTCGCAGCGGGGAGCG
CGGCGCTGGCGCTGATCGCCGCCTGCTGCGCAAGCCGCCTTGA
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protein sequence of Gvermi8212.t1

>Gvermi8212.t1 ID=Gvermi8212.t1|Name=Gvermi8212.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=331bp
MRSPIAAAAAAAAAAAAAAAPQLASLPHMPTPRPAALLRRALLLGLCPAL
VPDQSSARIAAVIGAATAAEIALSNLALNLLSVSFSTLLKAMAPLFVFGC
GLVLGIHRLRLAIVASLLTIAAGLVLAVSAEHKHTSPALAHFLRLGFLAQ
LASALFSAFRWVLTQLFIKHDPLLNHSVARLFNYRPPSKPWSAMQTVRRV
SPFTLCCVLPFVVLLEGPNLFSWFRSASLLQTLTLLALLSVIGAAVFVLL
WAEYELVRVTSSLTVSVAFVVKEMLLMFAATLMFRDRLPWPTCVGFAAVQ
AGVVLYASQSDRRSGERGAGADRRLLRKPP*
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mRNA from alignment at ScGOVlb_24226:1582501..1586528+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8212.t1 ID=Gvermi8212.t1|Name=Gvermi8212.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=4028bp|location=Sequence derived from alignment at ScGOVlb_24226:1582501..1586528+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGGTGTCGGAGGCGGGTGGGTGGTGGCGGTGCGAAGCGGCAAATGTG
AACGGCGTTTTATAGGCGATTTTGGAGAGCGCACGAAGCGTCGCGTCGAG
GCGATGGCGGGGTGCGATTTGGGGAGTGCGATATGTGTCACGACATCATT
TCGGGCGGATGGCGTGACGTTGACCACGAACCACATACTggcagcgccgc
agcggctgcagcacgcggcggcgcgcatccgtgcgcgatatattgtcgct
gcgagtgcgcgcggcgcgcgcgtctgcaacggcgccggcgccgggtggcg
agcgcaagcggcggctgaattgggcgcgcgccgctgccagtggccgccgg
cggcgcgaagcggcgcagcgcgccgtcaagcggcgcaacgcgcgccgctt
cgcacccgcatgtaagtacgctctctcgggcggcgcgcggcgcgcacgat
ggcgcatgatggcggcgcgcgagcgccatgctcagcaagcggcggggcgg
aagcgcgccgtgtgcgcgccgtggcgacgctgcgccgcgtggcgtgggcg
cgcgcaacatgcgctacacgcggcgcgctcgatggcgcgctgacggtggc
ggcggcggcggcggcggctgtcgtggtggtggtggtggtggtggcgcgcg
ctgcgAGAGAGCACCAGCGCGCCTTGCGCTGCGCGCCGGCGGCAAGTGCC
AATCGCGAGCATATCATTTGCAATCTCAATCCGCATCTCGAACACTCACT
GCCATCACGCCAAAAATGCATGGCCACgcgcggcgcgccgccatgcgatg
tgacgcgcggcgcacggcgccatatcgctgcgcgccaagcgcgtgcagct
cggtgacgcgccgcgccgcgtggcggtgcggcgcgcgcggcggcgagcgg
cgcggcgcgcgcggcgcgcgcagtggcgagcggcgcggcgggcgcagcgg
cgagcggcgcggcgcgcgcggcggcgagcggcgcggcgggcgcggcgggc
gcggcgggcgcggcgggcgcggcgggcgcggcgggcgcggcgggcgcggc
ggcgagcggcgcgacggcgcgcggtgcggcgcgcggcggcacgccatact
ggcgcgcacgcggcgagcgaaggtaaggcgcgcgtcgggcgtggaggccg
gggcgccagtgacggcggaccgacgacgggagccaatcggcgccgaggcg
ccaacgggcgcggcggcggcgcgctgctgtccgtccccgtcccagcggca
gcaggcggcgcgcgagcggcggcgcgccggttcgggcgcgaagcggcgcg
cgaaacggcgccgcgccgcgccgtccgcgccggtacagtacctcggtcgc
cgcgtgtatcttgcgcggcgccggtatcttgcgcgccgcccgtatcttgc
gcgccgcccgtatgtcggtcgccgcgcatgaagcagcgcgcgcgagcaac
aaacgtggcactcgctcttctgtcgtgctccgcgcaccacgccgagcggc
gcacgggcgccatcgtttactgcgcgtctcctccgcaacatcggcgcgcc
cccgcccgtagatgggcgcccctccgcggcggcggcggccagatgcgagt
gcaaactacagcgaacgcgcacattaaccggcagcaacagcctgtgctcg
caccccgccgcgcgcgctgcgttttttagcgcgtcgttttgctcgcgcag
atgtgtgccacggcacacgttgcacacgtgcgtcagcgcactgcgcttgc
ccgtcggccgccgccgcccgagcgtgccgcgcgcgcgcgccgcactgcgc
gccgcctgcgcccatccccaccgccgccgtcgcctataaaactcccgccg
tccacttcgccgtcgccgacaacaagccctcaacccgctacgccgccccc
tccgccgccccgctccgcagtctcgctccgctatccccctccgtcacggc
cgccgccgtcgcctttaaaactcccgccgtccacttcgccgtaggcaaca
acaagccctcagcccgctgcgccgccccctccgccgccccgctccgcagt
ctcgctccgccatcccccccgtcacggccgccgccgttcattcacacgcg
tctgccgctgctggcgcgcactgcccgcgcgcgtgcccatcgccgatcgc
cgccgacaccgtcggtcccgccgccgaagcgtgctgcccgtcgtgcgtgc
cgcccgccgtgcgtgccgcccgcgccccattcgcgcccagcaccgctcgc
cgatcgccgatcgctgccgctgccttcggtcccgccgccgaagcgtgctg
ctcgccgatcgccgcagctgccttcggtcccgccgccgaagcgtgctgcc
cgtcgtgcgtgccgcccgccgtgcgtgccgcccgccgtgcgtgccgcccg
ccgtgcgtgccgcccgcgccccattcgcgcccagcaccgctcgccgatcg
ccgccgctgccttcggtcccgccgccgaagcgtactgcccgccgaagcgt
actgcccgccgaagcgtgccgcccgccgtacgtgccgcccgcgccccatt
cgcgcccagcaccgatcgctgatcgccgccgccgccttcggtcccgccgc
cgaagcgtactgcccgccgaagcgtgccgcccaccgtgcgtgccgctcgc
gccccattcgcgcccAGCACCGATcgccgccgccgccgctgctgccgccg
ccgctgctgccgccgccgcTCCACAAGTACGTCAGCTGCCACCCCGTCCC
GCCCGGCGCCCACGAGAGGATGAGCTCCATAACCTCTTTTCCAAACGACT
TCTTCTTCCGATGAATGCCCGCCTTCGCTTCGCGCGTCGCCGCCGGCACG
TGTTTCCACCCACGGTTATGCTGATCTGCAGCGCCCACCGAGCCGCCCCA
CTTCCGCCCGCCTCCTACTGACACACCCCCTGTCCACTCACCCCCCAGCT
TGCGAGTCTCCCCCACATGCCGACGCCGCGCCCCGCCGCGCTCCTGCGCC
GCGCCCTGCTCCTTGGCCTGTGGTACGCCTCCTCCTCGTTTGCCGTCCTC
ACCACCAAGGCGCTCTTCTCGGGAATCGCGCCGCGCCTCGCCCCGTTTCC
GTTCGCGCTAACGCTCACGGCCACCAACAACGTCGTTGCGTCGCTCGCGT
CCGCCCTCTTCGCCGCCCACCAAAGCCCTGCGCTGGTCCCCGATCAAAGC
TCCGCCCGCATCGCCGCCGTCATTGGCGCCGCAACCGCCGCCGAAATCGC
CCTCTCCAACCTCGCCCTCAACCTTTTGTCCGTGTCCTTCTCCACGCTGC
TCAAGGCCATGGCCCCGCTTTTCGTCTTTGGCTGCGGCCTTGTGCTCGGC
ATTCACCGCTTGCGCCTCGCCATTGTCGCCTCGCTCCTCACCATCGCCGC
GGGCCTTGTGCTTGCCGTGTCTGCCGAACATAAACATACCAGCCCCGCCC
TTGCGCATTTCCTGCGCCTCGGCTTCCTTGCCCAGCTTGCCTCGGCGCTG
TTTTCGGCCTTTCGCTGGGTGCTCACCCAGCTCTTCATAAAGCATGACCC
ACTGCTTAACCACTCTGTCGCCAGGCTGTTCAACTATCGCCCGCCGTCCA
AGCCCTGGTCCGCCATGCAAACCGTGCGCCGCGTGTCGCCGTTCACCCTG
TGTTGCGTGCTGCCCTTTGTCGTCCTGCTGGAGGGCCCCAACCTTTTCAG
CTGGTTTCGGAGTGCCTCCTTGCTGCAAACCCTCACGCTGCTTGCGCTGC
TGTCCGTCATAGGCGCCGCCGTCTTCGTGCTGCTGTGGGCCGAGTACGAA
CTGGTCAGAGTCACCTCATCTCTCACCGTGTCCGTCGCCTTTGTCGTCAA
GGAAATGCTGCTCATGTTTGCCGCCACGCTCATGTTCCGCGACCGCCTGC
CGTGGCCCACGTGCGTGGGCTTCGCCGCCGTGCAGGCGGGCGTCGTCTTG
TATGCCTCGCAGAGCGACCGTCGCAGCGGGGAGCGCGGCGCTGGCGCTGA
TCGCCGCCTGCTGCGCAAGCCGCCTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:1582501..1586528+

>Gvermi8212.t1 ID=Gvermi8212.t1|Name=Gvermi8212.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=993bp|location=Sequence derived from alignment at ScGOVlb_24226:1582501..1586528+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGGTCACCGATcgccgccgccgccgctgctgccgccgccgctgctgc
cgccgccgcTCCACAACTTGCGAGTCTCCCCCACATGCCGACGCCGCGCC
CCGCCGCGCTCCTGCGCCGCGCCCTGCTCCTTGGCCTGTGCCCTGCGCTG
GTCCCCGATCAAAGCTCCGCCCGCATCGCCGCCGTCATTGGCGCCGCAAC
CGCCGCCGAAATCGCCCTCTCCAACCTCGCCCTCAACCTTTTGTCCGTGT
CCTTCTCCACGCTGCTCAAGGCCATGGCCCCGCTTTTCGTCTTTGGCTGC
GGCCTTGTGCTCGGCATTCACCGCTTGCGCCTCGCCATTGTCGCCTCGCT
CCTCACCATCGCCGCGGGCCTTGTGCTTGCCGTGTCTGCCGAACATAAAC
ATACCAGCCCCGCCCTTGCGCATTTCCTGCGCCTCGGCTTCCTTGCCCAG
CTTGCCTCGGCGCTGTTTTCGGCCTTTCGCTGGGTGCTCACCCAGCTCTT
CATAAAGCATGACCCACTGCTTAACCACTCTGTCGCCAGGCTGTTCAACT
ATCGCCCGCCGTCCAAGCCCTGGTCCGCCATGCAAACCGTGCGCCGCGTG
TCGCCGTTCACCCTGTGTTGCGTGCTGCCCTTTGTCGTCCTGCTGGAGGG
CCCCAACCTTTTCAGCTGGTTTCGGAGTGCCTCCTTGCTGCAAACCCTCA
CGCTGCTTGCGCTGCTGTCCGTCATAGGCGCCGCCGTCTTCGTGCTGCTG
TGGGCCGAGTACGAACTGGTCAGAGTCACCTCATCTCTCACCGTGTCCGT
CGCCTTTGTCGTCAAGGAAATGCTGCTCATGTTTGCCGCCACGCTCATGT
TCCGCGACCGCCTGCCGTGGCCCACGTGCGTGGGCTTCGCCGCCGTGCAG
GCGGGCGTCGTCTTGTATGCCTCGCAGAGCGACCGTCGCAGCGGGGAGCG
CGGCGCTGGCGCTGATCGCCGCCTGCTGCGCAAGCCGCCTTGA
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