Gvermi8208.t2 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8208.t2
Unique NameGvermi8208.t2
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length106
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:1568127..1568549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog296587.XP_002499512.1
PFAMsNADH-u_ox-rdase
Max annot lvl33090|Viridiplantae
Evalue9.43e-15
EggNOG OGs2BS7Y@1|root,2S1Y3@2759|Eukaryota,37VDH@33090|Viridiplantae
DescriptionNADH-ubiquinone oxidoreductase 20.9 kDa
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8208Gvermi8208Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 1568127..1568549 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8208.t2Gvermi8208.t2Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 1568127..1568549 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8208.t2.start1Gvermi8208.t2.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 1568127..1568129 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8208.t2.CDS1Gvermi8208.t2.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 1568127..1568271 +
Gvermi8208.t2.CDS2Gvermi8208.t2.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 1568377..1568549 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8208.t2.exon1Gvermi8208.t2.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 1568127..1568271 +
Gvermi8208.t2.exon2Gvermi8208.t2.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 1568377..1568549 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8208.t2.intron1Gvermi8208.t2.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 1568272..1568376 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8208.t2.stop1Gvermi8208.t2.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 1568547..1568549 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8208.t2 ID=Gvermi8208.t2|Name=Gvermi8208.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=106bp
MAHPINDPTFPIIDGDPTFGKVMSSLRASDWRNAALATFVSLPFGYAAGR
PVVMRPSMYMAGLIGASFGLFLGFQNSFGRLTGYKENAIEVAKYGPKKIA
SESSA*
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spliced messenger RNA

>Gvermi8208.t2 ID=Gvermi8208.t2|Name=Gvermi8208.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=318bp|location=Sequence derived from alignment at ScGOVlb_24226:1568127..1568549+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCACCCCATCAACGATCCAACTTTCCCTATCATAGATGGTGACCC
TACATTTGGGAAGGTAATGTCATCTCTCCGAGCCAGTGACTGGCGAAATG
CGGCACTTGCGACTTTTGTATCCCTCCCGTTCGGCTACGCAGCAGGTCGA
CCAGTTGTCATGCGCCCGTCAATGTACATGGCAGGCTTAATTGGGGCCAG
TTTCGGCCTTTTCCTGGGTTTCCAAAACTCCTTTGGAAGGCTTACTGGAT
ACAAGGAAAACGCTATCGAGGTTGCCAAATATGGCCCTAAAAAGATAGCA
TCAGAGTCGTCTGCATAG
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protein sequence of Gvermi8208.t2

>Gvermi8208.t2 ID=Gvermi8208.t2|Name=Gvermi8208.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=106bp
MAHPINDPTFPIIDGDPTFGKVMSSLRASDWRNAALATFVSLPFGYAAGR
PVVMRPSMYMAGLIGASFGLFLGFQNSFGRLTGYKENAIEVAKYGPKKIA
SESSA*
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mRNA from alignment at ScGOVlb_24226:1568127..1568549+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8208.t2 ID=Gvermi8208.t2|Name=Gvermi8208.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=423bp|location=Sequence derived from alignment at ScGOVlb_24226:1568127..1568549+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTCACCCCATCAACGATCCAACTTTCCCTATCATAGATGGTGACCC
TACATTTGGGAAGGTAATGTCATCTCTCCGAGCCAGTGACTGGCGAAATG
CGGCACTTGCGACTTTTGTATCCCTCCCGTTCGGCTACGCAGCAGGTTTG
TTTCAGCATTCAATTTAAATCCGTCTAAAATGTTCTTGTCATATGGGCAC
TACTGACCTATTGAGAAATGTCGATGTCTTTTTATTGCAACACTCTTCAG
GTCGACCAGTTGTCATGCGCCCGTCAATGTACATGGCAGGCTTAATTGGG
GCCAGTTTCGGCCTTTTCCTGGGTTTCCAAAACTCCTTTGGAAGGCTTAC
TGGATACAAGGAAAACGCTATCGAGGTTGCCAAATATGGCCCTAAAAAGA
TAGCATCAGAGTCGTCTGCATAG
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Coding sequence (CDS) from alignment at ScGOVlb_24226:1568127..1568549+

>Gvermi8208.t2 ID=Gvermi8208.t2|Name=Gvermi8208.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=318bp|location=Sequence derived from alignment at ScGOVlb_24226:1568127..1568549+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTCACCCCATCAACGATCCAACTTTCCCTATCATAGATGGTGACCC
TACATTTGGGAAGGTAATGTCATCTCTCCGAGCCAGTGACTGGCGAAATG
CGGCACTTGCGACTTTTGTATCCCTCCCGTTCGGCTACGCAGCAGGTCGA
CCAGTTGTCATGCGCCCGTCAATGTACATGGCAGGCTTAATTGGGGCCAG
TTTCGGCCTTTTCCTGGGTTTCCAAAACTCCTTTGGAAGGCTTACTGGAT
ACAAGGAAAACGCTATCGAGGTTGCCAAATATGGCCCTAAAAAGATAGCA
TCAGAGTCGTCTGCATAG
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