Gvermi8205.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8205.t1
Unique NameGvermi8205.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length242
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:1564392..1565117 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703966.1
PFAMsHexapep
Max annot lvl2759|Eukaryota
GOsGO:0000003,GO:0001101,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0005773,GO:0005774,GO:0006950,GO:0006970,GO:0007275,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009737,GO:0009791,GO:0009853,GO:0009987,GO:0010033,GO:0010228,GO:0016020,GO:0019866,GO:0022414,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032991,GO:0033993,GO:0042221,GO:0043094,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044437,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0061458,GO:0070469,GO:0097305,GO:0098588,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:0098805,GO:1901700,GO:1902494,GO:1990204
Evalue6.25e-38
EggNOG OGsCOG0663@1|root,2QQV5@2759|Eukaryota
Descriptioncarnitine dehydratase activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8205Gvermi8205Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 1564392..1565117 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8205.t1.start1Gvermi8205.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 1564392..1564394 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8205.t1.CDS1Gvermi8205.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 1564392..1565117 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8205.t1.exon1Gvermi8205.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 1564392..1565117 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8205.t1.stop1Gvermi8205.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 1565115..1565117 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8205.t1Gvermi8205.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 1564392..1565117 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8205.t1 ID=Gvermi8205.t1|Name=Gvermi8205.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=242bp
MQRAVLQRAVTHLRHFATKLAPPGNGPNHRSIMALDANTIRPYVQPNAFV
APSASVIGSVVVNDKTAIMYGTVVRGDLALIQIGALTIIGENCVLTAGAV
EGSMTPSDAVATGLTIEPELLVGDYCLIGANVTLKGCRIEGYNTIGHCSS
VAEGAVVGRFAVLEPGTSVGEGVTIPEEEVWAGSPAQKVRDITPDEKSKV
AQDAERRFAVTSSHAYEFLPVGFGYLEKEAMEAGKAATVPE*
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spliced messenger RNA

>Gvermi8205.t1 ID=Gvermi8205.t1|Name=Gvermi8205.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=726bp|location=Sequence derived from alignment at ScGOVlb_24226:1564392..1565117+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGAGAGCTGTCTTACAACGCGCGGTGACCCATCTACGTCACTTTGC
CACGAAACTAGCACCTCCCGGCAATGGTCCCAATCATCGTTCCATCATGG
CGCTAGATGCCAACACCATTAGGCCGTATGTTCAACCAAACGCTTTCGTC
GCCCCTTCAGCATCTGTGATCGGATCGGTCGTAGTCAACGATAAAACGGC
CATCATGTACGGCACTGTGGTGCGCGGTGATCTGGCTCTCATCCAGATTG
GTGCTCTTACTATTATCGGCGAGAATTGTGTGCTCACAGCTGGTGCCGTT
GAAGGCTCCATGACACCATCCGATGCGGTTGCTACGGGTCTCACCATTGA
GCCGGAGCTGTTGGTTGGAGACTATTGCTTGATTGGTGCTAATGTCACGT
TGAAGGGCTGTCGGATAGAAGGCTACAACACCATCGGACACTGTTCAAGC
GTTGCGGAAGGCGCCGTTGTTGGAAGATTTGCCGTTCTCGAGCCTGGAAC
CAGCGTTGGGGAGGGTGTGACTATCCCAGAAGAGGAGGTCTGGGCGGGAT
CTCCAGCGCAAAAAGTTCGTGACATCACACCGGATGAGAAATCGAAAGTT
GCACAAGATGCTGAGCGCCGCTTCGCAGTAACATCTTCACATGCGTACGA
GTTTTTACCAGTAGGCTTCGGCTACTTGGAAAAGGAGGCTATGGAAGCCG
GTAAAGCAGCTACGGTTCCCGAGTAG
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protein sequence of Gvermi8205.t1

>Gvermi8205.t1 ID=Gvermi8205.t1|Name=Gvermi8205.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=242bp
MQRAVLQRAVTHLRHFATKLAPPGNGPNHRSIMALDANTIRPYVQPNAFV
APSASVIGSVVVNDKTAIMYGTVVRGDLALIQIGALTIIGENCVLTAGAV
EGSMTPSDAVATGLTIEPELLVGDYCLIGANVTLKGCRIEGYNTIGHCSS
VAEGAVVGRFAVLEPGTSVGEGVTIPEEEVWAGSPAQKVRDITPDEKSKV
AQDAERRFAVTSSHAYEFLPVGFGYLEKEAMEAGKAATVPE*
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mRNA from alignment at ScGOVlb_24226:1564392..1565117+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8205.t1 ID=Gvermi8205.t1|Name=Gvermi8205.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=726bp|location=Sequence derived from alignment at ScGOVlb_24226:1564392..1565117+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGAGAGCTGTCTTACAACGCGCGGTGACCCATCTACGTCACTTTGC
CACGAAACTAGCACCTCCCGGCAATGGTCCCAATCATCGTTCCATCATGG
CGCTAGATGCCAACACCATTAGGCCGTATGTTCAACCAAACGCTTTCGTC
GCCCCTTCAGCATCTGTGATCGGATCGGTCGTAGTCAACGATAAAACGGC
CATCATGTACGGCACTGTGGTGCGCGGTGATCTGGCTCTCATCCAGATTG
GTGCTCTTACTATTATCGGCGAGAATTGTGTGCTCACAGCTGGTGCCGTT
GAAGGCTCCATGACACCATCCGATGCGGTTGCTACGGGTCTCACCATTGA
GCCGGAGCTGTTGGTTGGAGACTATTGCTTGATTGGTGCTAATGTCACGT
TGAAGGGCTGTCGGATAGAAGGCTACAACACCATCGGACACTGTTCAAGC
GTTGCGGAAGGCGCCGTTGTTGGAAGATTTGCCGTTCTCGAGCCTGGAAC
CAGCGTTGGGGAGGGTGTGACTATCCCAGAAGAGGAGGTCTGGGCGGGAT
CTCCAGCGCAAAAAGTTCGTGACATCACACCGGATGAGAAATCGAAAGTT
GCACAAGATGCTGAGCGCCGCTTCGCAGTAACATCTTCACATGCGTACGA
GTTTTTACCAGTAGGCTTCGGCTACTTGGAAAAGGAGGCTATGGAAGCCG
GTAAAGCAGCTACGGTTCCCGAGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_24226:1564392..1565117+

>Gvermi8205.t1 ID=Gvermi8205.t1|Name=Gvermi8205.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=726bp|location=Sequence derived from alignment at ScGOVlb_24226:1564392..1565117+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGAGAGCTGTCTTACAACGCGCGGTGACCCATCTACGTCACTTTGC
CACGAAACTAGCACCTCCCGGCAATGGTCCCAATCATCGTTCCATCATGG
CGCTAGATGCCAACACCATTAGGCCGTATGTTCAACCAAACGCTTTCGTC
GCCCCTTCAGCATCTGTGATCGGATCGGTCGTAGTCAACGATAAAACGGC
CATCATGTACGGCACTGTGGTGCGCGGTGATCTGGCTCTCATCCAGATTG
GTGCTCTTACTATTATCGGCGAGAATTGTGTGCTCACAGCTGGTGCCGTT
GAAGGCTCCATGACACCATCCGATGCGGTTGCTACGGGTCTCACCATTGA
GCCGGAGCTGTTGGTTGGAGACTATTGCTTGATTGGTGCTAATGTCACGT
TGAAGGGCTGTCGGATAGAAGGCTACAACACCATCGGACACTGTTCAAGC
GTTGCGGAAGGCGCCGTTGTTGGAAGATTTGCCGTTCTCGAGCCTGGAAC
CAGCGTTGGGGAGGGTGTGACTATCCCAGAAGAGGAGGTCTGGGCGGGAT
CTCCAGCGCAAAAAGTTCGTGACATCACACCGGATGAGAAATCGAAAGTT
GCACAAGATGCTGAGCGCCGCTTCGCAGTAACATCTTCACATGCGTACGA
GTTTTTACCAGTAGGCTTCGGCTACTTGGAAAAGGAGGCTATGGAAGCCG
GTAAAGCAGCTACGGTTCCCGAGTAG
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