Gvermi8204.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8204.t1
Unique NameGvermi8204.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length514
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:1561383..1562924 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog164328.Phyra79872
PFAMsPeptidase_C69
Max annot lvl4776|Peronosporales
Evalue5.84e-125
EggNOG OGsCOG4690@1|root,2QR8T@2759|Eukaryota,3Q7KV@4776|Peronosporales
DescriptionPeptidase family C69
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8204Gvermi8204Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 1561383..1562924 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8204.t1.stop1Gvermi8204.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 1561383..1561385 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8204.t1.CDS1Gvermi8204.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 1561383..1562924 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8204.t1.exon1Gvermi8204.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 1561383..1562924 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8204.t1.start1Gvermi8204.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 1562922..1562924 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8204.t1Gvermi8204.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 1561383..1562924 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8204.t1 ID=Gvermi8204.t1|Name=Gvermi8204.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=514bp
MSESTCSSRFVSKPRTQGGYALFDIGTLSQIALERAMTARKAIKIMGELA
EQYGYYGGYWFDEREMFYEAGESLMVADRREAWVFHIIPDDTGKSAIWVA
QRVPDTDMTVVANSFIIRAIDSESDDFMYSTNLYNVALRHGLWTQGTKLD
FTKTFSKLRYPPRSTYSNMRVWRLFTLANPDLLGVLDPHANDWLDGYPFS
VTPKAKLTREDVFRMYRDHFEDTRFDLTAGEAGGPYGDPNRYDIEANGNM
SSDRAASGEFGRAVSMFRTSYTTISRSKLSLPRELGSMMFYSQQQPSSSV
FVPLYISVQSIPKEFSRGSLFRYDNESLFWSVTLVSNWVHKFYKHAVNDL
KRLQRDVESYNIDEIDEEANKLVEKGKMDQAVSLVHDFCQKVATTSKTRY
SEFFWQLAARFHDGYIMRDENASKIEMKSMFYPEWWLQNVGYFAARETGG
SYGARFERDSTQTEIDEWYEMAVPWSIFTFSIGLVVGSMLSMCFVLFGCS
ALKRSNRNGYQRL*
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spliced messenger RNA

>Gvermi8204.t1 ID=Gvermi8204.t1|Name=Gvermi8204.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1542bp|location=Sequence derived from alignment at ScGOVlb_24226:1561383..1562924- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGAAAGTACTTGTTCGTCAAGATTTGTCTCAAAACCACGCACACA
GGGTGGGTATGCGCTATTTGATATTGGTACATTGTCTCAAATCGCCTTGG
AACGAGCTATGACGGCAAGGAAGGCTATCAAAATCATGGGAGAACTTGCT
GAGCAGTATGGTTACTATGGTGGATATTGGTTTGATGAACGTGAAATGTT
TTACGAGGCTGGGGAGTCTTTGATGGTAGCCGACCGACGAGAAGCATGGG
TATTTCATATTATTCCTGATGATACAGGAAAAAGTGCCATTTGGGTAGCA
CAGCGAGTGCCAGACACAGACATGACTGTCGTGGCGAATTCGTTTATTAT
CCGAGCTATTGATTCTGAGAGTGATGACTTCATGTATTCTACGAACCTGT
ACAACGTCGCTTTGCGCCATGGTCTCTGGACTCAAGGTACCAAGCTTGAT
TTCACGAAAACTTTCAGCAAGTTGCGATATCCACCTCGTAGCACATACTC
TAATATGAGGGTCTGGAGATTGTTTACTCTCGCGAATCCTGATCTTCTGG
GAGTCTTAGATCCCCATGCGAATGATTGGCTGGATGGGTATCCGTTTTCT
GTGACTCCCAAAGCGAAGCTAACCAGAGAAGATGTTTTTCGTATGTACAG
AGATCATTTTGAAGACACCCGGTTTGACCTCACTGCTGGTGAAGCTGGCG
GACCGTACGGGGATCCTAACAGATACGACATCGAAGCAAATGGTAACATG
TCGTCTGATAGAGCTGCTAGTGGCGAGTTTGGACGAGCTGTGTCCATGTT
TCGCACTAGCTATACAACAATTTCACGGTCAAAACTGAGTCTTCCCCGGG
AACTTGGGTCTATGATGTTCTATTCACAGCAGCAACCGAGCTCCAGCGTA
TTTGTGCCGCTGTACATTTCGGTGCAGTCGATTCCAAAAGAGTTTAGCCG
AGGGTCGCTCTTCAGATATGACAACGAATCTTTGTTTTGGTCAGTAACTT
TGGTATCTAATTGGGTGCACAAGTTTTATAAGCATGCCGTCAACGATTTG
AAGAGGCTACAGCGAGATGTTGAGAGCTATAATATTGACGAAATTGATGA
GGAAGCGAACAAACTCGTTGAAAAGGGCAAGATGGATCAAGCGGTCTCTC
TCGTGCATGACTTCTGCCAAAAAGTGGCGACCACTTCGAAAACGCGGTAT
TCGGAGTTCTTTTGGCAGCTTGCGGCTCGATTCCACGATGGGTACATCAT
GCGCGACGAAAACGCGTCAAAGATTGAGATGAAGTCTATGTTTTACCCTG
AGTGGTGGCTACAGAATGTCGGGTACTTTGCAGCACGAGAGACCGGCGGC
AGCTATGGGGCTCGTTTTGAGCGTGACTCGACGCAAACAGAGATCGATGA
GTGGTACGAGATGGCGGTACCGTGGTCCATCTTTACGTTCTCGATTGGTT
TAGTCGTTGGTTCGATGTTGTCTATGTGCTTTGTTTTGTTTGGGTGTTCT
GCGCTGAAGCGTTCCAACAGAAACGGTTACCAACGTTTATGA
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protein sequence of Gvermi8204.t1

>Gvermi8204.t1 ID=Gvermi8204.t1|Name=Gvermi8204.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=514bp
MSESTCSSRFVSKPRTQGGYALFDIGTLSQIALERAMTARKAIKIMGELA
EQYGYYGGYWFDEREMFYEAGESLMVADRREAWVFHIIPDDTGKSAIWVA
QRVPDTDMTVVANSFIIRAIDSESDDFMYSTNLYNVALRHGLWTQGTKLD
FTKTFSKLRYPPRSTYSNMRVWRLFTLANPDLLGVLDPHANDWLDGYPFS
VTPKAKLTREDVFRMYRDHFEDTRFDLTAGEAGGPYGDPNRYDIEANGNM
SSDRAASGEFGRAVSMFRTSYTTISRSKLSLPRELGSMMFYSQQQPSSSV
FVPLYISVQSIPKEFSRGSLFRYDNESLFWSVTLVSNWVHKFYKHAVNDL
KRLQRDVESYNIDEIDEEANKLVEKGKMDQAVSLVHDFCQKVATTSKTRY
SEFFWQLAARFHDGYIMRDENASKIEMKSMFYPEWWLQNVGYFAARETGG
SYGARFERDSTQTEIDEWYEMAVPWSIFTFSIGLVVGSMLSMCFVLFGCS
ALKRSNRNGYQRL*
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mRNA from alignment at ScGOVlb_24226:1561383..1562924-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8204.t1 ID=Gvermi8204.t1|Name=Gvermi8204.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1542bp|location=Sequence derived from alignment at ScGOVlb_24226:1561383..1562924- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGGAAAGTACTTGTTCGTCAAGATTTGTCTCAAAACCACGCACACA
GGGTGGGTATGCGCTATTTGATATTGGTACATTGTCTCAAATCGCCTTGG
AACGAGCTATGACGGCAAGGAAGGCTATCAAAATCATGGGAGAACTTGCT
GAGCAGTATGGTTACTATGGTGGATATTGGTTTGATGAACGTGAAATGTT
TTACGAGGCTGGGGAGTCTTTGATGGTAGCCGACCGACGAGAAGCATGGG
TATTTCATATTATTCCTGATGATACAGGAAAAAGTGCCATTTGGGTAGCA
CAGCGAGTGCCAGACACAGACATGACTGTCGTGGCGAATTCGTTTATTAT
CCGAGCTATTGATTCTGAGAGTGATGACTTCATGTATTCTACGAACCTGT
ACAACGTCGCTTTGCGCCATGGTCTCTGGACTCAAGGTACCAAGCTTGAT
TTCACGAAAACTTTCAGCAAGTTGCGATATCCACCTCGTAGCACATACTC
TAATATGAGGGTCTGGAGATTGTTTACTCTCGCGAATCCTGATCTTCTGG
GAGTCTTAGATCCCCATGCGAATGATTGGCTGGATGGGTATCCGTTTTCT
GTGACTCCCAAAGCGAAGCTAACCAGAGAAGATGTTTTTCGTATGTACAG
AGATCATTTTGAAGACACCCGGTTTGACCTCACTGCTGGTGAAGCTGGCG
GACCGTACGGGGATCCTAACAGATACGACATCGAAGCAAATGGTAACATG
TCGTCTGATAGAGCTGCTAGTGGCGAGTTTGGACGAGCTGTGTCCATGTT
TCGCACTAGCTATACAACAATTTCACGGTCAAAACTGAGTCTTCCCCGGG
AACTTGGGTCTATGATGTTCTATTCACAGCAGCAACCGAGCTCCAGCGTA
TTTGTGCCGCTGTACATTTCGGTGCAGTCGATTCCAAAAGAGTTTAGCCG
AGGGTCGCTCTTCAGATATGACAACGAATCTTTGTTTTGGTCAGTAACTT
TGGTATCTAATTGGGTGCACAAGTTTTATAAGCATGCCGTCAACGATTTG
AAGAGGCTACAGCGAGATGTTGAGAGCTATAATATTGACGAAATTGATGA
GGAAGCGAACAAACTCGTTGAAAAGGGCAAGATGGATCAAGCGGTCTCTC
TCGTGCATGACTTCTGCCAAAAAGTGGCGACCACTTCGAAAACGCGGTAT
TCGGAGTTCTTTTGGCAGCTTGCGGCTCGATTCCACGATGGGTACATCAT
GCGCGACGAAAACGCGTCAAAGATTGAGATGAAGTCTATGTTTTACCCTG
AGTGGTGGCTACAGAATGTCGGGTACTTTGCAGCACGAGAGACCGGCGGC
AGCTATGGGGCTCGTTTTGAGCGTGACTCGACGCAAACAGAGATCGATGA
GTGGTACGAGATGGCGGTACCGTGGTCCATCTTTACGTTCTCGATTGGTT
TAGTCGTTGGTTCGATGTTGTCTATGTGCTTTGTTTTGTTTGGGTGTTCT
GCGCTGAAGCGTTCCAACAGAAACGGTTACCAACGTTTATGA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:1561383..1562924-

>Gvermi8204.t1 ID=Gvermi8204.t1|Name=Gvermi8204.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1542bp|location=Sequence derived from alignment at ScGOVlb_24226:1561383..1562924- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGGAAAGTACTTGTTCGTCAAGATTTGTCTCAAAACCACGCACACA
GGGTGGGTATGCGCTATTTGATATTGGTACATTGTCTCAAATCGCCTTGG
AACGAGCTATGACGGCAAGGAAGGCTATCAAAATCATGGGAGAACTTGCT
GAGCAGTATGGTTACTATGGTGGATATTGGTTTGATGAACGTGAAATGTT
TTACGAGGCTGGGGAGTCTTTGATGGTAGCCGACCGACGAGAAGCATGGG
TATTTCATATTATTCCTGATGATACAGGAAAAAGTGCCATTTGGGTAGCA
CAGCGAGTGCCAGACACAGACATGACTGTCGTGGCGAATTCGTTTATTAT
CCGAGCTATTGATTCTGAGAGTGATGACTTCATGTATTCTACGAACCTGT
ACAACGTCGCTTTGCGCCATGGTCTCTGGACTCAAGGTACCAAGCTTGAT
TTCACGAAAACTTTCAGCAAGTTGCGATATCCACCTCGTAGCACATACTC
TAATATGAGGGTCTGGAGATTGTTTACTCTCGCGAATCCTGATCTTCTGG
GAGTCTTAGATCCCCATGCGAATGATTGGCTGGATGGGTATCCGTTTTCT
GTGACTCCCAAAGCGAAGCTAACCAGAGAAGATGTTTTTCGTATGTACAG
AGATCATTTTGAAGACACCCGGTTTGACCTCACTGCTGGTGAAGCTGGCG
GACCGTACGGGGATCCTAACAGATACGACATCGAAGCAAATGGTAACATG
TCGTCTGATAGAGCTGCTAGTGGCGAGTTTGGACGAGCTGTGTCCATGTT
TCGCACTAGCTATACAACAATTTCACGGTCAAAACTGAGTCTTCCCCGGG
AACTTGGGTCTATGATGTTCTATTCACAGCAGCAACCGAGCTCCAGCGTA
TTTGTGCCGCTGTACATTTCGGTGCAGTCGATTCCAAAAGAGTTTAGCCG
AGGGTCGCTCTTCAGATATGACAACGAATCTTTGTTTTGGTCAGTAACTT
TGGTATCTAATTGGGTGCACAAGTTTTATAAGCATGCCGTCAACGATTTG
AAGAGGCTACAGCGAGATGTTGAGAGCTATAATATTGACGAAATTGATGA
GGAAGCGAACAAACTCGTTGAAAAGGGCAAGATGGATCAAGCGGTCTCTC
TCGTGCATGACTTCTGCCAAAAAGTGGCGACCACTTCGAAAACGCGGTAT
TCGGAGTTCTTTTGGCAGCTTGCGGCTCGATTCCACGATGGGTACATCAT
GCGCGACGAAAACGCGTCAAAGATTGAGATGAAGTCTATGTTTTACCCTG
AGTGGTGGCTACAGAATGTCGGGTACTTTGCAGCACGAGAGACCGGCGGC
AGCTATGGGGCTCGTTTTGAGCGTGACTCGACGCAAACAGAGATCGATGA
GTGGTACGAGATGGCGGTACCGTGGTCCATCTTTACGTTCTCGATTGGTT
TAGTCGTTGGTTCGATGTTGTCTATGTGCTTTGTTTTGTTTGGGTGTTCT
GCGCTGAAGCGTTCCAACAGAAACGGTTACCAACGTTTATGA
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