Gvermi8202.t2 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8202.t2
Unique NameGvermi8202.t2
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length329
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:1557347..1558333 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8202Gvermi8202Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 1557347..1559191 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8202.t2.stop1Gvermi8202.t2.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 1557347..1557349 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8202.t2.CDS1Gvermi8202.t2.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 1557347..1558333 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8202.t2.exon1Gvermi8202.t2.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 1557347..1558333 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8202.t2.start1Gvermi8202.t2.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 1558331..1558333 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8202.t2Gvermi8202.t2Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 1557347..1558333 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8202.t2 ID=Gvermi8202.t2|Name=Gvermi8202.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=329bp
MSLSSVQNPSHGSDLAGSHSAIVATNTNDVTKLAFATQKQLSMRSNRQLA
THNTYSQESQRKPVTNLLGVQNAGASSKSNKTRKSHIGAQLNQKLRDGTL
ILNKDETGLDVITLPPKPKGRAKPNLTLVGLSPFENDDTELKEVICHSGE
NVFSPRGLKEADDTVESSTPSFKTNFPRPRLAPFSLKSPRQKEADDDETP
TSFRDLLKSPFGAMMRSLRSSRAQERTGSHSEPPETLENNAPSKALGSIS
FAQSPTSINSPRTPGQRNTRSYRTKKSFHASNPLSVSQASNEPIEDFRSE
TQELSEDITSPSPSSFRKLTALLHKKGR*
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spliced messenger RNA

>Gvermi8202.t2 ID=Gvermi8202.t2|Name=Gvermi8202.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=987bp|location=Sequence derived from alignment at ScGOVlb_24226:1557347..1558333- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTTTGTCTTCTGTCCAGAACCCGTCTCATGGTAGTGACTTGGCTGG
TTCTCATTCAGCCATCGTTGCGACGAATACCAATGATGTTACAAAACTAG
CATTTGCTACTCAGAAGCAATTAAGCATGCGATCAAATCGTCAGCTAGCA
ACTCACAATACATATTCCCAGGAATCACAGAGAAAGCCTGTGACGAATCT
TCTCGGGGTACAGAATGCAGGAGCCTCAAGCAAAAGCAACAAAACAAGGA
AGTCACACATTGGTGCTCAATTGAATCAAAAACTTAGAGACGGTACTCTG
ATTCTAAACAAAGATGAAACAGGATTGGATGTGATTACCCTGCCACCCAA
ACCGAAGGGTAGAGCGAAACCAAACCTAACATTAGTTGGCCTTTCTCCGT
TTGAAAATGACGACACGGAACTTAAGGAAGTTATATGCCACTCGGGCGAA
AATGTATTCAGTCCTCGGGGGCTAAAAGAAGCTGACGATACTGTCGAGAG
CAGCACACCTTCCTTCAAAACAAACTTCCCACGGCCTAGGCTAGCTCCTT
TCTCACTGAAGTCCCCTCGTCAGAAAGAAGCCGATGACGATGAAACTCCG
ACATCGTTTCGGGATCTTCTGAAGAGTCCTTTTGGAGCAATGATGCGATC
TTTGCGTAGCAGTCGTGCCCAGGAAAGAACTGGATCTCATTCAGAACCGC
CTGAAACTCTCGAAAACAATGCACCTAGCAAAGCGTTAGGCTCCATCTCT
TTTGCGCAGTCTCCGACATCGATCAATTCACCAAGAACACCAGGCCAACG
AAATACACGAAGCTATCGAACAAAAAAATCCTTCCATGCTTCAAATCCAC
TGTCTGTATCTCAAGCCTCGAATGAACCAATCGAAGATTTCCGCTCCGAA
ACACAGGAACTTTCGGAAGATATTACTTCACCTTCTCCTTCAAGCTTTCG
AAAACTCACTGCTCTTCTGCATAAGAAAGGAAGGTAA
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protein sequence of Gvermi8202.t2

>Gvermi8202.t2 ID=Gvermi8202.t2|Name=Gvermi8202.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=329bp
MSLSSVQNPSHGSDLAGSHSAIVATNTNDVTKLAFATQKQLSMRSNRQLA
THNTYSQESQRKPVTNLLGVQNAGASSKSNKTRKSHIGAQLNQKLRDGTL
ILNKDETGLDVITLPPKPKGRAKPNLTLVGLSPFENDDTELKEVICHSGE
NVFSPRGLKEADDTVESSTPSFKTNFPRPRLAPFSLKSPRQKEADDDETP
TSFRDLLKSPFGAMMRSLRSSRAQERTGSHSEPPETLENNAPSKALGSIS
FAQSPTSINSPRTPGQRNTRSYRTKKSFHASNPLSVSQASNEPIEDFRSE
TQELSEDITSPSPSSFRKLTALLHKKGR*
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mRNA from alignment at ScGOVlb_24226:1557347..1558333-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8202.t2 ID=Gvermi8202.t2|Name=Gvermi8202.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=987bp|location=Sequence derived from alignment at ScGOVlb_24226:1557347..1558333- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGTTTGTCTTCTGTCCAGAACCCGTCTCATGGTAGTGACTTGGCTGG
TTCTCATTCAGCCATCGTTGCGACGAATACCAATGATGTTACAAAACTAG
CATTTGCTACTCAGAAGCAATTAAGCATGCGATCAAATCGTCAGCTAGCA
ACTCACAATACATATTCCCAGGAATCACAGAGAAAGCCTGTGACGAATCT
TCTCGGGGTACAGAATGCAGGAGCCTCAAGCAAAAGCAACAAAACAAGGA
AGTCACACATTGGTGCTCAATTGAATCAAAAACTTAGAGACGGTACTCTG
ATTCTAAACAAAGATGAAACAGGATTGGATGTGATTACCCTGCCACCCAA
ACCGAAGGGTAGAGCGAAACCAAACCTAACATTAGTTGGCCTTTCTCCGT
TTGAAAATGACGACACGGAACTTAAGGAAGTTATATGCCACTCGGGCGAA
AATGTATTCAGTCCTCGGGGGCTAAAAGAAGCTGACGATACTGTCGAGAG
CAGCACACCTTCCTTCAAAACAAACTTCCCACGGCCTAGGCTAGCTCCTT
TCTCACTGAAGTCCCCTCGTCAGAAAGAAGCCGATGACGATGAAACTCCG
ACATCGTTTCGGGATCTTCTGAAGAGTCCTTTTGGAGCAATGATGCGATC
TTTGCGTAGCAGTCGTGCCCAGGAAAGAACTGGATCTCATTCAGAACCGC
CTGAAACTCTCGAAAACAATGCACCTAGCAAAGCGTTAGGCTCCATCTCT
TTTGCGCAGTCTCCGACATCGATCAATTCACCAAGAACACCAGGCCAACG
AAATACACGAAGCTATCGAACAAAAAAATCCTTCCATGCTTCAAATCCAC
TGTCTGTATCTCAAGCCTCGAATGAACCAATCGAAGATTTCCGCTCCGAA
ACACAGGAACTTTCGGAAGATATTACTTCACCTTCTCCTTCAAGCTTTCG
AAAACTCACTGCTCTTCTGCATAAGAAAGGAAGGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:1557347..1558333-

>Gvermi8202.t2 ID=Gvermi8202.t2|Name=Gvermi8202.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=987bp|location=Sequence derived from alignment at ScGOVlb_24226:1557347..1558333- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGTTTGTCTTCTGTCCAGAACCCGTCTCATGGTAGTGACTTGGCTGG
TTCTCATTCAGCCATCGTTGCGACGAATACCAATGATGTTACAAAACTAG
CATTTGCTACTCAGAAGCAATTAAGCATGCGATCAAATCGTCAGCTAGCA
ACTCACAATACATATTCCCAGGAATCACAGAGAAAGCCTGTGACGAATCT
TCTCGGGGTACAGAATGCAGGAGCCTCAAGCAAAAGCAACAAAACAAGGA
AGTCACACATTGGTGCTCAATTGAATCAAAAACTTAGAGACGGTACTCTG
ATTCTAAACAAAGATGAAACAGGATTGGATGTGATTACCCTGCCACCCAA
ACCGAAGGGTAGAGCGAAACCAAACCTAACATTAGTTGGCCTTTCTCCGT
TTGAAAATGACGACACGGAACTTAAGGAAGTTATATGCCACTCGGGCGAA
AATGTATTCAGTCCTCGGGGGCTAAAAGAAGCTGACGATACTGTCGAGAG
CAGCACACCTTCCTTCAAAACAAACTTCCCACGGCCTAGGCTAGCTCCTT
TCTCACTGAAGTCCCCTCGTCAGAAAGAAGCCGATGACGATGAAACTCCG
ACATCGTTTCGGGATCTTCTGAAGAGTCCTTTTGGAGCAATGATGCGATC
TTTGCGTAGCAGTCGTGCCCAGGAAAGAACTGGATCTCATTCAGAACCGC
CTGAAACTCTCGAAAACAATGCACCTAGCAAAGCGTTAGGCTCCATCTCT
TTTGCGCAGTCTCCGACATCGATCAATTCACCAAGAACACCAGGCCAACG
AAATACACGAAGCTATCGAACAAAAAAATCCTTCCATGCTTCAAATCCAC
TGTCTGTATCTCAAGCCTCGAATGAACCAATCGAAGATTTCCGCTCCGAA
ACACAGGAACTTTCGGAAGATATTACTTCACCTTCTCCTTCAAGCTTTCG
AAAACTCACTGCTCTTCTGCATAAGAAAGGAAGGTAA
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