Gvermi820.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi820.t1
Unique NameGvermi820.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length539
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:468262..470205 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi820Gvermi820Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2952 468262..470205 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi820.t1Gvermi820.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2952 468262..470205 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi820.t1.stop1Gvermi820.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2952 468262..468264 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi820.t1.CDS1Gvermi820.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 468262..468450 -
Gvermi820.t1.CDS2Gvermi820.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 468552..468685 -
Gvermi820.t1.CDS3Gvermi820.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 468796..468969 -
Gvermi820.t1.CDS4Gvermi820.t1.CDS4Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 469086..470205 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi820.t1.exon1Gvermi820.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 468262..468450 -
Gvermi820.t1.exon2Gvermi820.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 468552..468685 -
Gvermi820.t1.exon3Gvermi820.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 468796..468969 -
Gvermi820.t1.exon4Gvermi820.t1.exon4Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 469086..470205 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi820.t1.intron1Gvermi820.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_2952 468451..468551 -
Gvermi820.t1.intron2Gvermi820.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_2952 468686..468795 -
Gvermi820.t1.intron3Gvermi820.t1.intron3Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_2952 468970..469085 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi820.t1.start1Gvermi820.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2952 470203..470205 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi820.t1 ID=Gvermi820.t1|Name=Gvermi820.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=539bp
MEDFQESNCSKYDPEKNLHNAGEQGNCLASLRDPVYREEFNVCKSNICFL
LTLDPPLFTFNQESVDAGENRNRMKLPFRCKNSKETHRSVGGFALDILKK
TSAADEYCVWVGPLASCTWNALVDFAAVMGDQHGYQFAVVGPMLETPLRK
CRHYASTSWWDDRLVILGRNVRENKTDAHPIWQLVKPFESYTWVVVGAVL
ALFLIVCLIILYRFHVFRGKSAIAAITAFFVIIGDRTAALATSRLAQNRG
KETQPVRTKKIISNDLTELSFQSATSDGDLSLQIETNDSVTDEQIIQNDT
FLTKFSLSTSLFRVALIAFVAMFSLFYEVAVVNFLFQQQNIQLTKEIEHL
TVSELQQYCIMQHTAMEAIWNFRVNPRGSKFDEQDESQIPWKRGHSANEC
LSLVLDDDSPIQFFVTYELEGTYLIESRASCESVTIFETKESIHHFNSGW
LFNDKVPAEKRRQLDRELGALKILGALSDLDGGKGELCRPTLLSSITFGI
ILLPVAFLVLPPLICSAIVAIFWRKINSKIDGPLEGAP*
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spliced messenger RNA

>Gvermi820.t1 ID=Gvermi820.t1|Name=Gvermi820.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1617bp|location=Sequence derived from alignment at ScGOVlb_2952:468262..470205- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGACTTCCAAGAATCGAACTGCTCCAAGTATGACCCCGAGAAAAA
CTTGCACAACGCTGGGGAACAAGGCAACTGCCTTGCATCCCTTCGCGACC
CCGTGTATCGCGAAGAATTCAACGTGTGCAAGAGCAACATCTGCTTCCTT
CTCACACTCGACCCGCCCCTTTTCACCTTCAACCAGGAAAGTGTTGATGC
CGGTGAGAATCGAAACCGAATGAAGTTGCCGTTCCGCTGCAAGAACTCGA
AAGAGACACACCGCTCCGTGGGAGGATTTGCCCTGGATATTCTCAAGAAA
ACCAGTGCAGCGGATGAATACTGCGTGTGGGTGGGACCGCTCGCGTCATG
TACGTGGAACGCACTCGTTGATTTTGCCGCAGTGATGGGAGATCAACACG
GTTATCAGTTTGCCGTAGTGGGTCCCATGCTGGAAACGCCGCTGAGGAAG
TGCAGGCACTATGCCAGTACTTCATGGTGGGATGACCGACTCGTAATTCT
CGGAAGAAACGTGCGTGAAAACAAAACCGATGCGCATCCCATATGGCAAC
TTGTCAAGCCGTTTGAGAGCTACACATGGGTCGTAGTGGGAGCCGTACTA
GCCTTGTTTCTCATTGTTTGCCTCATCATTCTGTATCGCTTTCATGTGTT
TCGGGGAAAGTCTGCCATTGCTGCAATTACTGCCTTTTTTGTCATCATAG
GTGATAGAACAGCTGCGTTAGCAACAAGTCGCCTTGCTCAAAACAGAGGC
AAGGAGACACAACCCGTTCGTACGAAAAAAATCATTTCTAATGATTTGAC
GGAGTTGTCTTTCCAGAGCGCAACCAGTGATGGAGATTTATCTCTACAGA
TTGAGACGAATGATTCTGTGACGGACGAGCAAATTATTCAGAATGACACG
TTTCTCACAAAGTTCAGTCTTTCCACCTCTCTGTTTCGAGTTGCACTCAT
CGCTTTCGTCGCAATGTTCTCCTTGTTCTATGAGGTGGCGGTGGTCAACT
TTCTCTTCCAGCAGCAAAACATTCAGCTAACAAAAGAAATCGAACATTTG
ACTGTCAGCGAATTGCAGCAATACTGCATCATGCAACATACAGCAATGGA
GGCTATCTGGAACTTCAGAGTGAATCCAAGGGGATCCAAGTTTGATGAAC
AAGACGAATCGCAAATTCCATGGAAGCGTGGACACAGCGCAAATGAATGC
CTTTCGTTGGTTCTTGACGACGACAGTCCAATACAGTTCTTCGTGACGTA
TGAGCTTGAGGGCACATACTTGATTGAGTCCAGAGCCAGTTGCGAATCTG
TAACCATATTTGAAACGAAAGAATCAATCCATCACTTCAATAGCGGGTGG
CTGTTCAATGACAAGGTTCCAGCGGAGAAACGAAGGCAACTGGATCGCGA
ATTGGGAGCGTTGAAGATACTTGGGGCGTTGTCTGATTTAGACGGTGGAA
AGGGAGAGTTGTGCAGACCAACTTTGCTTTCCAGTATCACGTTTGGAATC
ATTCTTCTCCCTGTAGCGTTTTTAGTGCTTCCCCCTCTTATTTGCTCCGC
AATTGTGGCAATCTTCTGGCGGAAGATCAATTCCAAAATTGATGGGCCGT
TGGAGGGCGCTCCTTAA
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protein sequence of Gvermi820.t1

>Gvermi820.t1 ID=Gvermi820.t1|Name=Gvermi820.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=539bp
MEDFQESNCSKYDPEKNLHNAGEQGNCLASLRDPVYREEFNVCKSNICFL
LTLDPPLFTFNQESVDAGENRNRMKLPFRCKNSKETHRSVGGFALDILKK
TSAADEYCVWVGPLASCTWNALVDFAAVMGDQHGYQFAVVGPMLETPLRK
CRHYASTSWWDDRLVILGRNVRENKTDAHPIWQLVKPFESYTWVVVGAVL
ALFLIVCLIILYRFHVFRGKSAIAAITAFFVIIGDRTAALATSRLAQNRG
KETQPVRTKKIISNDLTELSFQSATSDGDLSLQIETNDSVTDEQIIQNDT
FLTKFSLSTSLFRVALIAFVAMFSLFYEVAVVNFLFQQQNIQLTKEIEHL
TVSELQQYCIMQHTAMEAIWNFRVNPRGSKFDEQDESQIPWKRGHSANEC
LSLVLDDDSPIQFFVTYELEGTYLIESRASCESVTIFETKESIHHFNSGW
LFNDKVPAEKRRQLDRELGALKILGALSDLDGGKGELCRPTLLSSITFGI
ILLPVAFLVLPPLICSAIVAIFWRKINSKIDGPLEGAP*
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mRNA from alignment at ScGOVlb_2952:468262..470205-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi820.t1 ID=Gvermi820.t1|Name=Gvermi820.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1944bp|location=Sequence derived from alignment at ScGOVlb_2952:468262..470205- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAGACTTCCAAGAATCGAACTGCTCCAAGTATGACCCCGAGAAAAA
CTTGCACAACGCTGGGGAACAAGGCAACTGCCTTGCATCCCTTCGCGACC
CCGTGTATCGCGAAGAATTCAACGTGTGCAAGAGCAACATCTGCTTCCTT
CTCACACTCGACCCGCCCCTTTTCACCTTCAACCAGGAAAGTGTTGATGC
CGGTGAGAATCGAAACCGAATGAAGTTGCCGTTCCGCTGCAAGAACTCGA
AAGAGACACACCGCTCCGTGGGAGGATTTGCCCTGGATATTCTCAAGAAA
ACCAGTGCAGCGGATGAATACTGCGTGTGGGTGGGACCGCTCGCGTCATG
TACGTGGAACGCACTCGTTGATTTTGCCGCAGTGATGGGAGATCAACACG
GTTATCAGTTTGCCGTAGTGGGTCCCATGCTGGAAACGCCGCTGAGGAAG
TGCAGGCACTATGCCAGTACTTCATGGTGGGATGACCGACTCGTAATTCT
CGGAAGAAACGTGCGTGAAAACAAAACCGATGCGCATCCCATATGGCAAC
TTGTCAAGCCGTTTGAGAGCTACACATGGGTCGTAGTGGGAGCCGTACTA
GCCTTGTTTCTCATTGTTTGCCTCATCATTCTGTATCGCTTTCATGTGTT
TCGGGGAAAGTCTGCCATTGCTGCAATTACTGCCTTTTTTGTCATCATAG
GTGATAGAACAGCTGCGTTAGCAACAAGTCGCCTTGCTCAAAACAGAGGC
AAGGAGACACAACCCGTTCGTACGAAAAAAATCATTTCTAATGATTTGAC
GGAGTTGTCTTTCCAGAGCGCAACCAGTGATGGAGATTTATCTCTACAGA
TTGAGACGAATGATTCTGTGACGGACGAGCAAATTATTCAGAATGACACG
TTTCTCACAAAGTTCAGTCTTTCCACCTCTCTGTTTCGAGTTGCACTCAT
CGCTTTCGTCGCAATGTTCTCCTTGTTCTATGAGGTGGCGGTGGTCAACT
TTCTCTTCCAGCAGCAAAACATTCAGCTAACAAAAGAAATCGAACATTTG
ACTGTCAGCGAATTGCAGCAATACTGCATCATGCAACATACAGCAATGGA
GGCTATCTGGAACTTCAGAGGTAAGCATCAAAATACATGTGTTCAATACT
TGCTTGACCTTGTGTTGTTGCTGTTCAGCCTAACACTAACATCACCATAA
CTCTTCGCCTTTGCTTTGTGTTCAACGTTTGTGCAGTGAATCCAAGGGGA
TCCAAGTTTGATGAACAAGACGAATCGCAAATTCCATGGAAGCGTGGACA
CAGCGCAAATGAATGCCTTTCGTTGGTTCTTGACGACGACAGTCCAATAC
AGTTCTTCGTGACGTATGAGCTTGAGGGCACATACTTGATTGAGTCCAGA
GCCAGTTGCGGTAAGTGATGGACTCGCCAGTATGATAGCGGATATCGTCA
AAGACTTTTTTTTTGTCGTGGCTTTAGTTCAAGTTCTGACGATTTTATGG
CAATGTTGATCACGGACCAGAATCTGTAACCATATTTGAAACGAAAGAAT
CAATCCATCACTTCAATAGCGGGTGGCTGTTCAATGACAAGGTTCCAGCG
GAGAAACGAAGGCAACTGGATCGCGAATTGGGAGCGTTGAAGATACTTGG
GGCGGTACGTTGCTCAGAAATACAGAGTCACTATTTTGATAACTGAAAAT
GCTCAGACTGACGCATGTTCAATTCTCTTGCACACTCTATTCATCTTCGT
TGCAGTTGTCTGATTTAGACGGTGGAAAGGGAGAGTTGTGCAGACCAACT
TTGCTTTCCAGTATCACGTTTGGAATCATTCTTCTCCCTGTAGCGTTTTT
AGTGCTTCCCCCTCTTATTTGCTCCGCAATTGTGGCAATCTTCTGGCGGA
AGATCAATTCCAAAATTGATGGGCCGTTGGAGGGCGCTCCTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_2952:468262..470205-

>Gvermi820.t1 ID=Gvermi820.t1|Name=Gvermi820.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1617bp|location=Sequence derived from alignment at ScGOVlb_2952:468262..470205- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAGACTTCCAAGAATCGAACTGCTCCAAGTATGACCCCGAGAAAAA
CTTGCACAACGCTGGGGAACAAGGCAACTGCCTTGCATCCCTTCGCGACC
CCGTGTATCGCGAAGAATTCAACGTGTGCAAGAGCAACATCTGCTTCCTT
CTCACACTCGACCCGCCCCTTTTCACCTTCAACCAGGAAAGTGTTGATGC
CGGTGAGAATCGAAACCGAATGAAGTTGCCGTTCCGCTGCAAGAACTCGA
AAGAGACACACCGCTCCGTGGGAGGATTTGCCCTGGATATTCTCAAGAAA
ACCAGTGCAGCGGATGAATACTGCGTGTGGGTGGGACCGCTCGCGTCATG
TACGTGGAACGCACTCGTTGATTTTGCCGCAGTGATGGGAGATCAACACG
GTTATCAGTTTGCCGTAGTGGGTCCCATGCTGGAAACGCCGCTGAGGAAG
TGCAGGCACTATGCCAGTACTTCATGGTGGGATGACCGACTCGTAATTCT
CGGAAGAAACGTGCGTGAAAACAAAACCGATGCGCATCCCATATGGCAAC
TTGTCAAGCCGTTTGAGAGCTACACATGGGTCGTAGTGGGAGCCGTACTA
GCCTTGTTTCTCATTGTTTGCCTCATCATTCTGTATCGCTTTCATGTGTT
TCGGGGAAAGTCTGCCATTGCTGCAATTACTGCCTTTTTTGTCATCATAG
GTGATAGAACAGCTGCGTTAGCAACAAGTCGCCTTGCTCAAAACAGAGGC
AAGGAGACACAACCCGTTCGTACGAAAAAAATCATTTCTAATGATTTGAC
GGAGTTGTCTTTCCAGAGCGCAACCAGTGATGGAGATTTATCTCTACAGA
TTGAGACGAATGATTCTGTGACGGACGAGCAAATTATTCAGAATGACACG
TTTCTCACAAAGTTCAGTCTTTCCACCTCTCTGTTTCGAGTTGCACTCAT
CGCTTTCGTCGCAATGTTCTCCTTGTTCTATGAGGTGGCGGTGGTCAACT
TTCTCTTCCAGCAGCAAAACATTCAGCTAACAAAAGAAATCGAACATTTG
ACTGTCAGCGAATTGCAGCAATACTGCATCATGCAACATACAGCAATGGA
GGCTATCTGGAACTTCAGAGTGAATCCAAGGGGATCCAAGTTTGATGAAC
AAGACGAATCGCAAATTCCATGGAAGCGTGGACACAGCGCAAATGAATGC
CTTTCGTTGGTTCTTGACGACGACAGTCCAATACAGTTCTTCGTGACGTA
TGAGCTTGAGGGCACATACTTGATTGAGTCCAGAGCCAGTTGCGAATCTG
TAACCATATTTGAAACGAAAGAATCAATCCATCACTTCAATAGCGGGTGG
CTGTTCAATGACAAGGTTCCAGCGGAGAAACGAAGGCAACTGGATCGCGA
ATTGGGAGCGTTGAAGATACTTGGGGCGTTGTCTGATTTAGACGGTGGAA
AGGGAGAGTTGTGCAGACCAACTTTGCTTTCCAGTATCACGTTTGGAATC
ATTCTTCTCCCTGTAGCGTTTTTAGTGCTTCCCCCTCTTATTTGCTCCGC
AATTGTGGCAATCTTCTGGCGGAAGATCAATTCCAAAATTGATGGGCCGT
TGGAGGGCGCTCCTTAA
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