Gvermi8156.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8156.t1
Unique NameGvermi8156.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length204
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:1315404..1316161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8156Gvermi8156Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 1315404..1316161 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8156.t1Gvermi8156.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 1315404..1316161 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8156.t1.start1Gvermi8156.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 1315404..1315406 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8156.t1.CDS1Gvermi8156.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 1315404..1315925 +
Gvermi8156.t1.CDS2Gvermi8156.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 1316072..1316161 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8156.t1.exon1Gvermi8156.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 1315404..1315925 +
Gvermi8156.t1.exon2Gvermi8156.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 1316072..1316161 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8156.t1.intron1Gvermi8156.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 1315926..1316071 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8156.t1.stop1Gvermi8156.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 1316159..1316161 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8156.t1 ID=Gvermi8156.t1|Name=Gvermi8156.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=204bp
MNESAALIARRTQAARDALRRRQKEKKARIVKKHVRYKQKQKLLSQLALS
ENEAPIVATEFARIGDEEEHHPTRKLARVNDGSQVEPSTPPAESGGDGRA
PSAGSPENRLQVTAGGDDGANPKRGSKKYVPFAKERKLYEEAKKKRDEQH
KEQEQKIKQREEMLKCSKKKRKQQAKQYRAVTNRGQPRMKHRIDALLARI
EKQ*
back to top

spliced messenger RNA

>Gvermi8156.t1 ID=Gvermi8156.t1|Name=Gvermi8156.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=612bp|location=Sequence derived from alignment at ScGOVlb_24226:1315404..1316161+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGAATCTGCCGCTTTGATAGCCCGTCGAACACAGGCGGCACGCGA
CGCGTTGCGACGTCGTCAAAAAGAGAAGAAAGCTCGGATTGTAAAGAAAC
ACGTGCGCTACAAACAAAAACAAAAGCTGCTCTCTCAGTTGGCTTTGTCT
GAGAACGAAGCGCCCATAGTTGCCACAGAATTCGCGAGAATAGGCGATGA
GGAAGAACACCATCCTACGCGGAAGCTGGCAAGGGTGAACGATGGCTCTC
AAGTGGAGCCATCAACGCCGCCTGCCGAATCCGGCGGTGACGGACGTGCG
CCTTCTGCCGGCTCGCCAGAAAATCGATTACAAGTGACGGCCGGTGGCGA
CGACGGAGCGAATCCGAAGAGGGGCAGCAAGAAATATGTCCCATTTGCCA
AGGAGCGAAAACTGTATGAGGAAGCGAAGAAGAAACGAGACGAGCAACAC
AAGGAACAAGAGCAGAAGATCAAGCAACGGGAGGAAATGTTGAAATGCTC
CAAAAAGAAGAGAAAGCAACAGGCCAAGCAGTATCGCGCGGTGACAAACA
GAGGCCAGCCGAGAATGAAACACCGCATAGACGCATTACTCGCGCGCATT
GAAAAGCAGTAA
back to top

protein sequence of Gvermi8156.t1

>Gvermi8156.t1 ID=Gvermi8156.t1|Name=Gvermi8156.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=204bp
MNESAALIARRTQAARDALRRRQKEKKARIVKKHVRYKQKQKLLSQLALS
ENEAPIVATEFARIGDEEEHHPTRKLARVNDGSQVEPSTPPAESGGDGRA
PSAGSPENRLQVTAGGDDGANPKRGSKKYVPFAKERKLYEEAKKKRDEQH
KEQEQKIKQREEMLKCSKKKRKQQAKQYRAVTNRGQPRMKHRIDALLARI
EKQ*
back to top

mRNA from alignment at ScGOVlb_24226:1315404..1316161+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8156.t1 ID=Gvermi8156.t1|Name=Gvermi8156.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=758bp|location=Sequence derived from alignment at ScGOVlb_24226:1315404..1316161+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAATGAATCTGCCGCTTTGATAGCCCGTCGAACACAGGCGGCACGCGA
CGCGTTGCGACGTCGTCAAAAAGAGAAGAAAGCTCGGATTGTAAAGAAAC
ACGTGCGCTACAAACAAAAACAAAAGCTGCTCTCTCAGTTGGCTTTGTCT
GAGAACGAAGCGCCCATAGTTGCCACAGAATTCGCGAGAATAGGCGATGA
GGAAGAACACCATCCTACGCGGAAGCTGGCAAGGGTGAACGATGGCTCTC
AAGTGGAGCCATCAACGCCGCCTGCCGAATCCGGCGGTGACGGACGTGCG
CCTTCTGCCGGCTCGCCAGAAAATCGATTACAAGTGACGGCCGGTGGCGA
CGACGGAGCGAATCCGAAGAGGGGCAGCAAGAAATATGTCCCATTTGCCA
AGGAGCGAAAACTGTATGAGGAAGCGAAGAAGAAACGAGACGAGCAACAC
AAGGAACAAGAGCAGAAGATCAAGCAACGGGAGGAAATGTTGAAATGCTC
CAAAAAGAAGAGAAAGCAACAGGTACGTCAATTTGATGAAATGGTTTATT
GGCGATCCTCAAAGCGGTGTTGCAGCGCGAAAAGAGCTCGGCACAGCGCG
ATAACGCGCGCAAGGAAGACTAACTTGTATCAAATCGCGGCGTTGTTTCA
TTTGATTTCCCGCGACAGGCCAAGCAGTATCGCGCGGTGACAAACAGAGG
CCAGCCGAGAATGAAACACCGCATAGACGCATTACTCGCGCGCATTGAAA
AGCAGTAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_24226:1315404..1316161+

>Gvermi8156.t1 ID=Gvermi8156.t1|Name=Gvermi8156.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=612bp|location=Sequence derived from alignment at ScGOVlb_24226:1315404..1316161+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAATGAATCTGCCGCTTTGATAGCCCGTCGAACACAGGCGGCACGCGA
CGCGTTGCGACGTCGTCAAAAAGAGAAGAAAGCTCGGATTGTAAAGAAAC
ACGTGCGCTACAAACAAAAACAAAAGCTGCTCTCTCAGTTGGCTTTGTCT
GAGAACGAAGCGCCCATAGTTGCCACAGAATTCGCGAGAATAGGCGATGA
GGAAGAACACCATCCTACGCGGAAGCTGGCAAGGGTGAACGATGGCTCTC
AAGTGGAGCCATCAACGCCGCCTGCCGAATCCGGCGGTGACGGACGTGCG
CCTTCTGCCGGCTCGCCAGAAAATCGATTACAAGTGACGGCCGGTGGCGA
CGACGGAGCGAATCCGAAGAGGGGCAGCAAGAAATATGTCCCATTTGCCA
AGGAGCGAAAACTGTATGAGGAAGCGAAGAAGAAACGAGACGAGCAACAC
AAGGAACAAGAGCAGAAGATCAAGCAACGGGAGGAAATGTTGAAATGCTC
CAAAAAGAAGAGAAAGCAACAGGCCAAGCAGTATCGCGCGGTGACAAACA
GAGGCCAGCCGAGAATGAAACACCGCATAGACGCATTACTCGCGCGCATT
GAAAAGCAGTAA
back to top