Gvermi8152.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8152.t1
Unique NameGvermi8152.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length174
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:1306162..1306683 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog35128.Thaps21973
PFAMsG-patch
Max annot lvl2836|Bacillariophyta
KEGG koko:K11135
Evalue1.29e-08
EggNOG OGs2BNPX@1|root,2S1Q2@2759|Eukaryota,2XGZU@2836|Bacillariophyta
Descriptionglycine rich nucleic binding domain
COG categoryS
BRITEko00000,ko03009,ko03032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8152Gvermi8152Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 1306162..1306683 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8152.t1.start1Gvermi8152.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 1306162..1306164 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8152.t1.CDS1Gvermi8152.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 1306162..1306683 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8152.t1.exon1Gvermi8152.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 1306162..1306683 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8152.t1.stop1Gvermi8152.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 1306681..1306683 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8152.t1Gvermi8152.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 1306162..1306683 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8152.t1 ID=Gvermi8152.t1|Name=Gvermi8152.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=174bp
MGVIGGIGARMLSKMGWTEGSGLGRNRDGRVDPLVHRRRPDSLGIGAEKR
PFEDAWWEKMLENAYGTPAKTVDDDALFRASDGRRCRAHGTAKLARLDAH
DKAASASKGDGEKGDENGQGQQSKRDKQLKRGRRKKERKMKKLGGVSLPE
KGISKKRKMRQKDIRIKTKLDDD*
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spliced messenger RNA

>Gvermi8152.t1 ID=Gvermi8152.t1|Name=Gvermi8152.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=522bp|location=Sequence derived from alignment at ScGOVlb_24226:1306162..1306683+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGTGATCGGCGGCATTGGGGCCAGGATGCTCTCCAAGATGGGGTG
GACGGAGGGCAGTGGGCTGGGCCGCAACCGGGACGGCCGCGTCGACCCAC
TGGTGCACCGGCGCCGGCCGGATTCGCTCGGAATCGGCGCCGAAAAGCGC
CCGTTTGAGGATGCGTGGTGGGAGAAAATGCTGGAAAACGCGTACGGAAC
GCCTGCAAAAACGGTGGACGACGATGCTCTTTTCAGGGCGAGTGACGGGC
GCAGGTGCCGTGCGCATGGAACTGCCAAATTGGCGCGGCTCGATGCCCAT
GACAAAGCTGCCTCGGCCTCAAAGGGAGACGGGGAGAAGGGGGACGAAAA
CGGGCAAGGACAACAATCCAAACGCGATAAACAGTTAAAGCGTGGGCGGA
GGAAAAAGGAGCGCAAGATGAAAAAGCTGGGAGGGGTGAGTCTGCCAGAA
AAGGGGATATCCAAGAAACGGAAGATGAGGCAAAAAGACATTCGGATCAA
GACAAAGCTTGATGACGACTAA
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protein sequence of Gvermi8152.t1

>Gvermi8152.t1 ID=Gvermi8152.t1|Name=Gvermi8152.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=174bp
MGVIGGIGARMLSKMGWTEGSGLGRNRDGRVDPLVHRRRPDSLGIGAEKR
PFEDAWWEKMLENAYGTPAKTVDDDALFRASDGRRCRAHGTAKLARLDAH
DKAASASKGDGEKGDENGQGQQSKRDKQLKRGRRKKERKMKKLGGVSLPE
KGISKKRKMRQKDIRIKTKLDDD*
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mRNA from alignment at ScGOVlb_24226:1306162..1306683+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8152.t1 ID=Gvermi8152.t1|Name=Gvermi8152.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=522bp|location=Sequence derived from alignment at ScGOVlb_24226:1306162..1306683+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCGTGATCGGCGGCATTGGGGCCAGGATGCTCTCCAAGATGGGGTG
GACGGAGGGCAGTGGGCTGGGCCGCAACCGGGACGGCCGCGTCGACCCAC
TGGTGCACCGGCGCCGGCCGGATTCGCTCGGAATCGGCGCCGAAAAGCGC
CCGTTTGAGGATGCGTGGTGGGAGAAAATGCTGGAAAACGCGTACGGAAC
GCCTGCAAAAACGGTGGACGACGATGCTCTTTTCAGGGCGAGTGACGGGC
GCAGGTGCCGTGCGCATGGAACTGCCAAATTGGCGCGGCTCGATGCCCAT
GACAAAGCTGCCTCGGCCTCAAAGGGAGACGGGGAGAAGGGGGACGAAAA
CGGGCAAGGACAACAATCCAAACGCGATAAACAGTTAAAGCGTGGGCGGA
GGAAAAAGGAGCGCAAGATGAAAAAGCTGGGAGGGGTGAGTCTGCCAGAA
AAGGGGATATCCAAGAAACGGAAGATGAGGCAAAAAGACATTCGGATCAA
GACAAAGCTTGATGACGACTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:1306162..1306683+

>Gvermi8152.t1 ID=Gvermi8152.t1|Name=Gvermi8152.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=522bp|location=Sequence derived from alignment at ScGOVlb_24226:1306162..1306683+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCGTGATCGGCGGCATTGGGGCCAGGATGCTCTCCAAGATGGGGTG
GACGGAGGGCAGTGGGCTGGGCCGCAACCGGGACGGCCGCGTCGACCCAC
TGGTGCACCGGCGCCGGCCGGATTCGCTCGGAATCGGCGCCGAAAAGCGC
CCGTTTGAGGATGCGTGGTGGGAGAAAATGCTGGAAAACGCGTACGGAAC
GCCTGCAAAAACGGTGGACGACGATGCTCTTTTCAGGGCGAGTGACGGGC
GCAGGTGCCGTGCGCATGGAACTGCCAAATTGGCGCGGCTCGATGCCCAT
GACAAAGCTGCCTCGGCCTCAAAGGGAGACGGGGAGAAGGGGGACGAAAA
CGGGCAAGGACAACAATCCAAACGCGATAAACAGTTAAAGCGTGGGCGGA
GGAAAAAGGAGCGCAAGATGAAAAAGCTGGGAGGGGTGAGTCTGCCAGAA
AAGGGGATATCCAAGAAACGGAAGATGAGGCAAAAAGACATTCGGATCAA
GACAAAGCTTGATGACGACTAA
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