Gvermi8147.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8147.t1
Unique NameGvermi8147.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length176
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:1240326..1240853 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog37682.EMT12578
PFAMsCCT
Max annot lvl35493|Streptophyta
GOsGO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0007154,GO:0007165,GO:0008150,GO:0009314,GO:0009416,GO:0009628,GO:0009639,GO:0009889,GO:0009909,GO:0009987,GO:0010017,GO:0010099,GO:0010114,GO:0010161,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0023052,GO:0031323,GO:0031326,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043565,GO:0044424,GO:0044464,GO:0048580,GO:0048583,GO:0048831,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051239,GO:0051252,GO:0051716,GO:0060255,GO:0065007,GO:0071214,GO:0071478,GO:0071482,GO:0071489,GO:0071491,GO:0080090,GO:0097159,GO:0104004,GO:0140110,GO:1901363,GO:1903506,GO:2000026,GO:2000030,GO:2000112,GO:2000241,GO:2001141
Evalue3.96e-05
EggNOG OGs2A39T@1|root,2RY4T@2759|Eukaryota,388VW@33090|Viridiplantae,3GKQQ@35493|Streptophyta,3M7A6@4447|Liliopsida,3IJ5W@38820|Poales
DescriptionCCT motif
COG categoryK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8147Gvermi8147Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 1240326..1240853 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8147.t1.start1Gvermi8147.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 1240326..1240328 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8147.t1.CDS1Gvermi8147.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 1240326..1240853 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8147.t1.exon1Gvermi8147.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 1240326..1240853 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8147.t1.stop1Gvermi8147.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 1240851..1240853 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8147.t1Gvermi8147.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 1240326..1240853 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8147.t1 ID=Gvermi8147.t1|Name=Gvermi8147.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=176bp
MSRISSETNLAVQLLLAVSDTRHSRLPSKSSRPNSSSATSSDLPADSSDD
SESSNCVVTPNQSPSLRQKSVSQPNASPRGVPPTFGRGDATFFKYTFEER
QEALKRFREKKRRRQFQKRVRYMVRKRLAETRPRYKGRFSKPPPGENYDD
GTPGPPAKPKSSKNSDVSQRKDKAA*
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spliced messenger RNA

>Gvermi8147.t1 ID=Gvermi8147.t1|Name=Gvermi8147.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=528bp|location=Sequence derived from alignment at ScGOVlb_24226:1240326..1240853+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCGGATAAGCAGCGAGACGAACTTGGCTGTCCAGCTTCTCTTAGC
CGTCAGTGATACCCGCCACAGCCGGCTGCCGTCTAAATCCTCTCGACCCA
ATTCGAGCAGCGCAACTTCGTCCGACCTTCCTGCTGATTCAAGTGATGAC
TCCGAGTCATCGAACTGCGTTGTCACTCCGAATCAGTCCCCGAGTTTGCG
TCAGAAGAGTGTCTCTCAACCTAACGCATCCCCGAGGGGCGTGCCACCAA
CTTTCGGGCGTGGTGACGCCACTTTTTTCAAGTACACTTTTGAGGAAAGA
CAAGAGGCGCTGAAGCGCTTCCGGGAAAAGAAGAGGCGTCGCCAATTCCA
AAAAAGGGTTCGATACATGGTCAGGAAACGCCTTGCAGAGACCAGGCCAA
GGTACAAGGGACGCTTTTCGAAACCCCCACCAGGTGAGAATTACGACGAT
GGTACTCCAGGACCCCCAGCTAAGCCGAAATCTTCAAAGAACAGCGATGT
CTCTCAAAGGAAAGACAAAGCTGCTTAA
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protein sequence of Gvermi8147.t1

>Gvermi8147.t1 ID=Gvermi8147.t1|Name=Gvermi8147.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=176bp
MSRISSETNLAVQLLLAVSDTRHSRLPSKSSRPNSSSATSSDLPADSSDD
SESSNCVVTPNQSPSLRQKSVSQPNASPRGVPPTFGRGDATFFKYTFEER
QEALKRFREKKRRRQFQKRVRYMVRKRLAETRPRYKGRFSKPPPGENYDD
GTPGPPAKPKSSKNSDVSQRKDKAA*
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mRNA from alignment at ScGOVlb_24226:1240326..1240853+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8147.t1 ID=Gvermi8147.t1|Name=Gvermi8147.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=528bp|location=Sequence derived from alignment at ScGOVlb_24226:1240326..1240853+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTCGGATAAGCAGCGAGACGAACTTGGCTGTCCAGCTTCTCTTAGC
CGTCAGTGATACCCGCCACAGCCGGCTGCCGTCTAAATCCTCTCGACCCA
ATTCGAGCAGCGCAACTTCGTCCGACCTTCCTGCTGATTCAAGTGATGAC
TCCGAGTCATCGAACTGCGTTGTCACTCCGAATCAGTCCCCGAGTTTGCG
TCAGAAGAGTGTCTCTCAACCTAACGCATCCCCGAGGGGCGTGCCACCAA
CTTTCGGGCGTGGTGACGCCACTTTTTTCAAGTACACTTTTGAGGAAAGA
CAAGAGGCGCTGAAGCGCTTCCGGGAAAAGAAGAGGCGTCGCCAATTCCA
AAAAAGGGTTCGATACATGGTCAGGAAACGCCTTGCAGAGACCAGGCCAA
GGTACAAGGGACGCTTTTCGAAACCCCCACCAGGTGAGAATTACGACGAT
GGTACTCCAGGACCCCCAGCTAAGCCGAAATCTTCAAAGAACAGCGATGT
CTCTCAAAGGAAAGACAAAGCTGCTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:1240326..1240853+

>Gvermi8147.t1 ID=Gvermi8147.t1|Name=Gvermi8147.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=528bp|location=Sequence derived from alignment at ScGOVlb_24226:1240326..1240853+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTCGGATAAGCAGCGAGACGAACTTGGCTGTCCAGCTTCTCTTAGC
CGTCAGTGATACCCGCCACAGCCGGCTGCCGTCTAAATCCTCTCGACCCA
ATTCGAGCAGCGCAACTTCGTCCGACCTTCCTGCTGATTCAAGTGATGAC
TCCGAGTCATCGAACTGCGTTGTCACTCCGAATCAGTCCCCGAGTTTGCG
TCAGAAGAGTGTCTCTCAACCTAACGCATCCCCGAGGGGCGTGCCACCAA
CTTTCGGGCGTGGTGACGCCACTTTTTTCAAGTACACTTTTGAGGAAAGA
CAAGAGGCGCTGAAGCGCTTCCGGGAAAAGAAGAGGCGTCGCCAATTCCA
AAAAAGGGTTCGATACATGGTCAGGAAACGCCTTGCAGAGACCAGGCCAA
GGTACAAGGGACGCTTTTCGAAACCCCCACCAGGTGAGAATTACGACGAT
GGTACTCCAGGACCCCCAGCTAAGCCGAAATCTTCAAAGAACAGCGATGT
CTCTCAAAGGAAAGACAAAGCTGCTTAA
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