Gvermi8144.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi8144.t1
Unique Name	Gvermi8144.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	659

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24226	contig	ScGOVlb_24226:1229025..1231001 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi8144	Gvermi8144	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24226 1229025..1231001 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8144.t1.start1	Gvermi8144.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24226 1229025..1229027 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8144.t1.CDS1	Gvermi8144.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24226 1229025..1231001 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8144.t1.exon1	Gvermi8144.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24226 1229025..1231001 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8144.t1.stop1	Gvermi8144.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24226 1230999..1231001 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8144.t1	Gvermi8144.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24226 1229025..1231001 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24226:1229025..1231001+
coding sequence from alignment at ScGOVlb_24226:1229025..1231001+

mRNA sequence

>Gvermi8144.t1 ID=Gvermi8144.t1|Name=Gvermi8144.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=659bp
MAGKGKRKAVGQPISSTQATKRQKHSVRSSPVSKIPTRADKFRATGSQLD
KTSNTPAKTELADTHICVAVTKAINESKQLKKCKGEARKDLCSNIVDLLT
EALVKDVNAANLNGDPANVSLSARDEPIPVDDAPQKNPKLSQVHSQKRLK
KTTALAPSKSIPPSSKQKGKHSQKAVLEPEKRQSRKQLGTPKLSEKARPK
APPKKGKPKSDAQSIMNVSGKPKKKSTKRTATESPISRLPKNGKQPPTET
ILFIEESIVDGGAAMKSEPRSFSVTKTRRQKSVDGYDTEVVLDSSDHDLN
PSQSKSKDLILNTRSRLPWWRTTESLVSLPSSPANAEDLLKFYVMAVIRS
CVRGSWSGDALKQCFDKDPSSSRGKAFLAVSSSLLLMERARHMGQCHVKW
RPELIRELVQRRVIEWSRIQKHVSFDHFAGCDVCLGHREATIRLWLRGDR
YDSSDFWPGSSRVDVLTAEERDDGVLSVAVELQRGTKNERYVRIGGPNEK
GDSEFWVDPQCLRKCLLFHELVHATAIIARDLRILIEDELRNGVVHLDMR
NRVPGDEKLGVSERLERYLVQAVSENRDFLKRRTKHLMEIVRLGDIYFSA
VEEELIDSGNPERRASRRTPQIYDPPIVLNDEKYKDRIERIVSLTQQRGL
TASFATFG*

spliced messenger RNA

>Gvermi8144.t1 ID=Gvermi8144.t1|Name=Gvermi8144.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1977bp|location=Sequence derived from alignment at ScGOVlb_24226:1229025..1231001+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGGAAAAGGAAAGCGCAAGGCTGTTGGACAACCTATCAGCTCCAC
TCAGGCGACGAAGCGGCAAAAACACTCCGTGAGGAGTTCCCCAGTCTCGA
AAATCCCCACCAGGGCAGATAAGTTTCGTGCTACCGGCTCGCAATTGGAT
AAAACATCCAATACCCCTGCAAAAACAGAACTAGCCGACACCCATATCTG
TGTTGCTGTTACTAAAGCAATCAACGAGTCAAAGCAACTTAAAAAGTGCA
AAGGAGAAGCTAGAAAAGATTTGTGTTCTAATATTGTTGATTTACTAACT
GAAGCTCTTGTGAAAGACGTGAATGCTGCCAATTTGAATGGGGATCCTGC
CAACGTGTCGCTCTCTGCAAGAGATGAACCAATTCCAGTGGATGATGCCC
CTCAAAAGAACCCCAAGCTAAGTCAGGTGCACTCGCAGAAGCGTCTCAAG
AAAACTACTGCACTTGCACCGAGCAAAAGCATTCCTCCCTCCTCGAAACA
GAAAGGGAAGCATTCACAAAAGGCCGTGTTGGAACCAGAGAAACGACAAT
CTCGCAAACAGCTAGGAACGCCAAAATTGTCTGAAAAGGCTCGTCCCAAA
GCACCGCCGAAGAAGGGGAAGCCTAAATCAGATGCTCAATCGATAATGAA
CGTATCAGGCAAACCTAAAAAGAAGTCAACGAAGAGAACTGCAACCGAAT
CACCGATATCCAGATTACCAAAAAACGGAAAACAACCACCAACAGAAACG
ATCCTTTTCATCGAAGAGTCCATTGTTGACGGAGGGGCTGCCATGAAATC
TGAGCCTCGATCTTTCTCTGTGACGAAGACGAGAAGACAGAAGTCTGTTG
ATGGATACGACACTGAAGTGGTTCTGGACTCGTCCGATCATGATCTGAAT
CCATCTCAAAGTAAGTCGAAAGATCTCATACTCAATACAAGATCCCGTCT
TCCATGGTGGCGTACGACAGAGTCACTTGTAAGCCTACCGTCGAGCCCAG
CAAATGCAGAAGACTTGCTGAAATTTTATGTAATGGCAGTGATTAGATCA
TGCGTACGCGGGTCTTGGAGTGGAGATGCACTTAAACAATGTTTCGATAA
GGATCCCTCATCTTCGCGTGGGAAAGCTTTTTTGGCGGTGAGCTCCAGTT
TGCTACTAATGGAGCGTGCGAGGCACATGGGCCAATGTCATGTAAAATGG
AGACCGGAGCTTATACGGGAACTTGTGCAACGGCGAGTGATTGAATGGTC
AAGAATTCAAAAGCATGTTTCATTCGATCATTTCGCGGGTTGCGATGTTT
GCCTTGGTCACCGTGAGGCCACGATCCGATTGTGGCTTCGAGGGGACCGA
TATGATTCGAGCGATTTTTGGCCGGGAAGTAGCCGTGTTGATGTATTGAC
GGCTGAAGAACGAGATGATGGTGTTTTATCAGTCGCCGTGGAACTTCAGA
GAGGCACAAAGAACGAACGTTACGTTCGAATCGGTGGACCGAACGAGAAA
GGCGACTCCGAGTTTTGGGTAGACCCACAATGTCTACGAAAATGTCTCTT
ATTCCATGAGCTTGTCCATGCCACAGCTATTATTGCGCGAGACCTGCGAA
TTCTCATTGAGGATGAACTTCGTAATGGAGTTGTTCACTTAGACATGCGC
AATCGAGTGCCCGGAGATGAAAAGCTGGGAGTCTCTGAGAGACTCGAGAG
GTATCTGGTGCAGGCTGTTTCTGAGAACAGAGATTTCTTGAAGAGAAGAA
CGAAGCATTTGATGGAAATTGTACGTCTGGGGGATATTTACTTTTCTGCG
GTAGAAGAGGAATTAATTGACTCCGGAAATCCAGAAAGGAGAGCAAGTCG
GAGAACGCCGCAGATATATGATCCTCCAATAGTTCTCAACGATGAGAAGT
ACAAGGATCGAATCGAAAGAATTGTTTCACTAACACAGCAACGAGGCCTA
ACGGCTTCCTTTGCCACTTTTGGTTAA

protein sequence of Gvermi8144.t1

>Gvermi8144.t1 ID=Gvermi8144.t1|Name=Gvermi8144.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=659bp
MAGKGKRKAVGQPISSTQATKRQKHSVRSSPVSKIPTRADKFRATGSQLD
KTSNTPAKTELADTHICVAVTKAINESKQLKKCKGEARKDLCSNIVDLLT
EALVKDVNAANLNGDPANVSLSARDEPIPVDDAPQKNPKLSQVHSQKRLK
KTTALAPSKSIPPSSKQKGKHSQKAVLEPEKRQSRKQLGTPKLSEKARPK
APPKKGKPKSDAQSIMNVSGKPKKKSTKRTATESPISRLPKNGKQPPTET
ILFIEESIVDGGAAMKSEPRSFSVTKTRRQKSVDGYDTEVVLDSSDHDLN
PSQSKSKDLILNTRSRLPWWRTTESLVSLPSSPANAEDLLKFYVMAVIRS
CVRGSWSGDALKQCFDKDPSSSRGKAFLAVSSSLLLMERARHMGQCHVKW
RPELIRELVQRRVIEWSRIQKHVSFDHFAGCDVCLGHREATIRLWLRGDR
YDSSDFWPGSSRVDVLTAEERDDGVLSVAVELQRGTKNERYVRIGGPNEK
GDSEFWVDPQCLRKCLLFHELVHATAIIARDLRILIEDELRNGVVHLDMR
NRVPGDEKLGVSERLERYLVQAVSENRDFLKRRTKHLMEIVRLGDIYFSA
VEEELIDSGNPERRASRRTPQIYDPPIVLNDEKYKDRIERIVSLTQQRGL
TASFATFG*

mRNA from alignment at ScGOVlb_24226:1229025..1231001+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi8144.t1 ID=Gvermi8144.t1|Name=Gvermi8144.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1977bp|location=Sequence derived from alignment at ScGOVlb_24226:1229025..1231001+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGGGAAAAGGAAAGCGCAAGGCTGTTGGACAACCTATCAGCTCCAC
TCAGGCGACGAAGCGGCAAAAACACTCCGTGAGGAGTTCCCCAGTCTCGA
AAATCCCCACCAGGGCAGATAAGTTTCGTGCTACCGGCTCGCAATTGGAT
AAAACATCCAATACCCCTGCAAAAACAGAACTAGCCGACACCCATATCTG
TGTTGCTGTTACTAAAGCAATCAACGAGTCAAAGCAACTTAAAAAGTGCA
AAGGAGAAGCTAGAAAAGATTTGTGTTCTAATATTGTTGATTTACTAACT
GAAGCTCTTGTGAAAGACGTGAATGCTGCCAATTTGAATGGGGATCCTGC
CAACGTGTCGCTCTCTGCAAGAGATGAACCAATTCCAGTGGATGATGCCC
CTCAAAAGAACCCCAAGCTAAGTCAGGTGCACTCGCAGAAGCGTCTCAAG
AAAACTACTGCACTTGCACCGAGCAAAAGCATTCCTCCCTCCTCGAAACA
GAAAGGGAAGCATTCACAAAAGGCCGTGTTGGAACCAGAGAAACGACAAT
CTCGCAAACAGCTAGGAACGCCAAAATTGTCTGAAAAGGCTCGTCCCAAA
GCACCGCCGAAGAAGGGGAAGCCTAAATCAGATGCTCAATCGATAATGAA
CGTATCAGGCAAACCTAAAAAGAAGTCAACGAAGAGAACTGCAACCGAAT
CACCGATATCCAGATTACCAAAAAACGGAAAACAACCACCAACAGAAACG
ATCCTTTTCATCGAAGAGTCCATTGTTGACGGAGGGGCTGCCATGAAATC
TGAGCCTCGATCTTTCTCTGTGACGAAGACGAGAAGACAGAAGTCTGTTG
ATGGATACGACACTGAAGTGGTTCTGGACTCGTCCGATCATGATCTGAAT
CCATCTCAAAGTAAGTCGAAAGATCTCATACTCAATACAAGATCCCGTCT
TCCATGGTGGCGTACGACAGAGTCACTTGTAAGCCTACCGTCGAGCCCAG
CAAATGCAGAAGACTTGCTGAAATTTTATGTAATGGCAGTGATTAGATCA
TGCGTACGCGGGTCTTGGAGTGGAGATGCACTTAAACAATGTTTCGATAA
GGATCCCTCATCTTCGCGTGGGAAAGCTTTTTTGGCGGTGAGCTCCAGTT
TGCTACTAATGGAGCGTGCGAGGCACATGGGCCAATGTCATGTAAAATGG
AGACCGGAGCTTATACGGGAACTTGTGCAACGGCGAGTGATTGAATGGTC
AAGAATTCAAAAGCATGTTTCATTCGATCATTTCGCGGGTTGCGATGTTT
GCCTTGGTCACCGTGAGGCCACGATCCGATTGTGGCTTCGAGGGGACCGA
TATGATTCGAGCGATTTTTGGCCGGGAAGTAGCCGTGTTGATGTATTGAC
GGCTGAAGAACGAGATGATGGTGTTTTATCAGTCGCCGTGGAACTTCAGA
GAGGCACAAAGAACGAACGTTACGTTCGAATCGGTGGACCGAACGAGAAA
GGCGACTCCGAGTTTTGGGTAGACCCACAATGTCTACGAAAATGTCTCTT
ATTCCATGAGCTTGTCCATGCCACAGCTATTATTGCGCGAGACCTGCGAA
TTCTCATTGAGGATGAACTTCGTAATGGAGTTGTTCACTTAGACATGCGC
AATCGAGTGCCCGGAGATGAAAAGCTGGGAGTCTCTGAGAGACTCGAGAG
GTATCTGGTGCAGGCTGTTTCTGAGAACAGAGATTTCTTGAAGAGAAGAA
CGAAGCATTTGATGGAAATTGTACGTCTGGGGGATATTTACTTTTCTGCG
GTAGAAGAGGAATTAATTGACTCCGGAAATCCAGAAAGGAGAGCAAGTCG
GAGAACGCCGCAGATATATGATCCTCCAATAGTTCTCAACGATGAGAAGT
ACAAGGATCGAATCGAAAGAATTGTTTCACTAACACAGCAACGAGGCCTA
ACGGCTTCCTTTGCCACTTTTGGTTAA

Coding sequence (CDS) from alignment at ScGOVlb_24226:1229025..1231001+

>Gvermi8144.t1 ID=Gvermi8144.t1|Name=Gvermi8144.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1977bp|location=Sequence derived from alignment at ScGOVlb_24226:1229025..1231001+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGGGAAAAGGAAAGCGCAAGGCTGTTGGACAACCTATCAGCTCCAC
TCAGGCGACGAAGCGGCAAAAACACTCCGTGAGGAGTTCCCCAGTCTCGA
AAATCCCCACCAGGGCAGATAAGTTTCGTGCTACCGGCTCGCAATTGGAT
AAAACATCCAATACCCCTGCAAAAACAGAACTAGCCGACACCCATATCTG
TGTTGCTGTTACTAAAGCAATCAACGAGTCAAAGCAACTTAAAAAGTGCA
AAGGAGAAGCTAGAAAAGATTTGTGTTCTAATATTGTTGATTTACTAACT
GAAGCTCTTGTGAAAGACGTGAATGCTGCCAATTTGAATGGGGATCCTGC
CAACGTGTCGCTCTCTGCAAGAGATGAACCAATTCCAGTGGATGATGCCC
CTCAAAAGAACCCCAAGCTAAGTCAGGTGCACTCGCAGAAGCGTCTCAAG
AAAACTACTGCACTTGCACCGAGCAAAAGCATTCCTCCCTCCTCGAAACA
GAAAGGGAAGCATTCACAAAAGGCCGTGTTGGAACCAGAGAAACGACAAT
CTCGCAAACAGCTAGGAACGCCAAAATTGTCTGAAAAGGCTCGTCCCAAA
GCACCGCCGAAGAAGGGGAAGCCTAAATCAGATGCTCAATCGATAATGAA
CGTATCAGGCAAACCTAAAAAGAAGTCAACGAAGAGAACTGCAACCGAAT
CACCGATATCCAGATTACCAAAAAACGGAAAACAACCACCAACAGAAACG
ATCCTTTTCATCGAAGAGTCCATTGTTGACGGAGGGGCTGCCATGAAATC
TGAGCCTCGATCTTTCTCTGTGACGAAGACGAGAAGACAGAAGTCTGTTG
ATGGATACGACACTGAAGTGGTTCTGGACTCGTCCGATCATGATCTGAAT
CCATCTCAAAGTAAGTCGAAAGATCTCATACTCAATACAAGATCCCGTCT
TCCATGGTGGCGTACGACAGAGTCACTTGTAAGCCTACCGTCGAGCCCAG
CAAATGCAGAAGACTTGCTGAAATTTTATGTAATGGCAGTGATTAGATCA
TGCGTACGCGGGTCTTGGAGTGGAGATGCACTTAAACAATGTTTCGATAA
GGATCCCTCATCTTCGCGTGGGAAAGCTTTTTTGGCGGTGAGCTCCAGTT
TGCTACTAATGGAGCGTGCGAGGCACATGGGCCAATGTCATGTAAAATGG
AGACCGGAGCTTATACGGGAACTTGTGCAACGGCGAGTGATTGAATGGTC
AAGAATTCAAAAGCATGTTTCATTCGATCATTTCGCGGGTTGCGATGTTT
GCCTTGGTCACCGTGAGGCCACGATCCGATTGTGGCTTCGAGGGGACCGA
TATGATTCGAGCGATTTTTGGCCGGGAAGTAGCCGTGTTGATGTATTGAC
GGCTGAAGAACGAGATGATGGTGTTTTATCAGTCGCCGTGGAACTTCAGA
GAGGCACAAAGAACGAACGTTACGTTCGAATCGGTGGACCGAACGAGAAA
GGCGACTCCGAGTTTTGGGTAGACCCACAATGTCTACGAAAATGTCTCTT
ATTCCATGAGCTTGTCCATGCCACAGCTATTATTGCGCGAGACCTGCGAA
TTCTCATTGAGGATGAACTTCGTAATGGAGTTGTTCACTTAGACATGCGC
AATCGAGTGCCCGGAGATGAAAAGCTGGGAGTCTCTGAGAGACTCGAGAG
GTATCTGGTGCAGGCTGTTTCTGAGAACAGAGATTTCTTGAAGAGAAGAA
CGAAGCATTTGATGGAAATTGTACGTCTGGGGGATATTTACTTTTCTGCG
GTAGAAGAGGAATTAATTGACTCCGGAAATCCAGAAAGGAGAGCAAGTCG
GAGAACGCCGCAGATATATGATCCTCCAATAGTTCTCAACGATGAGAAGT
ACAAGGATCGAATCGAAAGAATTGTTTCACTAACACAGCAACGAGGCCTA
ACGGCTTCCTTTGCCACTTTTGGTTAA