Gvermi8138.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8138.t1
Unique NameGvermi8138.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length217
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:1207756..1208406 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5334.XP_003037106.1
Preferred nameYFH1
PFAMsFrataxin_Cyay
Max annot lvl4751|Fungi
KEGG rclassRC02758
KEGG koko:K19054
KEGG ReactionR00078
KEGG Pathwayko00860,map00860
GOsGO:0003674,GO:0003824,GO:0004322,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006464,GO:0006518,GO:0006575,GO:0006725,GO:0006749,GO:0006778,GO:0006779,GO:0006783,GO:0006790,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0008198,GO:0008199,GO:0009058,GO:0009987,GO:0016043,GO:0016226,GO:0016491,GO:0016530,GO:0016722,GO:0016724,GO:0018130,GO:0018282,GO:0018283,GO:0019438,GO:0019538,GO:0019725,GO:0022607,GO:0030003,GO:0031163,GO:0031974,GO:0033013,GO:0033014,GO:0033554,GO:0034599,GO:0034641,GO:0034986,GO:0036211,GO:0042168,GO:0042221,GO:0042440,GO:0042592,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043603,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044571,GO:0046148,GO:0046483,GO:0046872,GO:0046914,GO:0046916,GO:0048037,GO:0048878,GO:0050801,GO:0050896,GO:0051186,GO:0051188,GO:0051536,GO:0051537,GO:0051540,GO:0051716,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0055114,GO:0065007,GO:0065008,GO:0070013,GO:0070887,GO:0071704,GO:0071840,GO:0098771,GO:0140104,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue2.9e-24
EggNOG OGsCOG1965@1|root,KOG3413@2759|Eukaryota,3A3XZ@33154|Opisthokonta,3P5HA@4751|Fungi,3V2AG@5204|Basidiomycota,22A2H@155619|Agaricomycetes,3W7NW@5338|Agaricales
EC1.16.3.1
DescriptionFrataxin-like domain
COG categoryP
BRITEko00000,ko00001,ko01000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8138Gvermi8138Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 1207756..1208406 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8138.t1.stop1Gvermi8138.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 1207756..1207758 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8138.t1.CDS1Gvermi8138.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 1207756..1208406 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8138.t1.exon1Gvermi8138.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 1207756..1208406 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8138.t1.start1Gvermi8138.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 1208404..1208406 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8138.t1Gvermi8138.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 1207756..1208406 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8138.t1 ID=Gvermi8138.t1|Name=Gvermi8138.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=217bp
MLSRSSQKALNVVRMYELGFIRCSRLQHRSIAFSAFAKALVSIPYSQMNI
QTSVNSRYPLKSWMDKSVVSSLGNKHISLVRGLSSDSFLKDVMNEEWPEH
EFSATAEASLETISEVISNLSLDSVSCSDDFDVEFSQGVLTVSLGDHGTY
VLNTQTPNRQIWLSSPSSGPWRYAWNPRLSQWVSTRDGHSLADRLATELG
DIFKGKVAFSFSTLHS*
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spliced messenger RNA

>Gvermi8138.t1 ID=Gvermi8138.t1|Name=Gvermi8138.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=651bp|location=Sequence derived from alignment at ScGOVlb_24226:1207756..1208406- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCTCAAGATCTTCGCAGAAAGCCCTCAACGTGGTTCGAATGTATGA
ACTGGGCTTTATACGATGTAGCCGATTACAACACCGAAGCATAGCCTTCA
GCGCTTTCGCAAAAGCTCTGGTTTCTATCCCATACTCTCAGATGAACATT
CAAACTTCTGTAAACAGCAGGTATCCGTTGAAGTCCTGGATGGATAAGTC
AGTTGTTTCAAGCCTGGGAAACAAACACATTTCTTTAGTCCGAGGACTGT
CTTCCGACTCTTTTCTGAAAGACGTAATGAATGAGGAATGGCCTGAGCAC
GAGTTCTCTGCCACTGCCGAAGCGTCGCTTGAAACCATAAGCGAAGTTAT
ATCCAACCTGAGCTTGGATTCAGTTAGCTGCTCTGATGATTTCGACGTCG
AATTCAGCCAGGGAGTGCTAACTGTTTCACTGGGCGACCATGGCACATAT
GTTCTAAACACGCAGACGCCAAACAGACAAATCTGGCTAAGCTCCCCATC
ATCGGGTCCATGGCGATATGCGTGGAATCCGAGATTAAGTCAGTGGGTAA
GCACCCGAGATGGTCACTCCCTTGCGGATCGACTCGCCACGGAACTGGGA
GATATATTTAAGGGGAAAGTGGCCTTCTCGTTTTCTACATTACATTCCTG
A
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protein sequence of Gvermi8138.t1

>Gvermi8138.t1 ID=Gvermi8138.t1|Name=Gvermi8138.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=217bp
MLSRSSQKALNVVRMYELGFIRCSRLQHRSIAFSAFAKALVSIPYSQMNI
QTSVNSRYPLKSWMDKSVVSSLGNKHISLVRGLSSDSFLKDVMNEEWPEH
EFSATAEASLETISEVISNLSLDSVSCSDDFDVEFSQGVLTVSLGDHGTY
VLNTQTPNRQIWLSSPSSGPWRYAWNPRLSQWVSTRDGHSLADRLATELG
DIFKGKVAFSFSTLHS*
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mRNA from alignment at ScGOVlb_24226:1207756..1208406-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8138.t1 ID=Gvermi8138.t1|Name=Gvermi8138.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=651bp|location=Sequence derived from alignment at ScGOVlb_24226:1207756..1208406- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCTCAAGATCTTCGCAGAAAGCCCTCAACGTGGTTCGAATGTATGA
ACTGGGCTTTATACGATGTAGCCGATTACAACACCGAAGCATAGCCTTCA
GCGCTTTCGCAAAAGCTCTGGTTTCTATCCCATACTCTCAGATGAACATT
CAAACTTCTGTAAACAGCAGGTATCCGTTGAAGTCCTGGATGGATAAGTC
AGTTGTTTCAAGCCTGGGAAACAAACACATTTCTTTAGTCCGAGGACTGT
CTTCCGACTCTTTTCTGAAAGACGTAATGAATGAGGAATGGCCTGAGCAC
GAGTTCTCTGCCACTGCCGAAGCGTCGCTTGAAACCATAAGCGAAGTTAT
ATCCAACCTGAGCTTGGATTCAGTTAGCTGCTCTGATGATTTCGACGTCG
AATTCAGCCAGGGAGTGCTAACTGTTTCACTGGGCGACCATGGCACATAT
GTTCTAAACACGCAGACGCCAAACAGACAAATCTGGCTAAGCTCCCCATC
ATCGGGTCCATGGCGATATGCGTGGAATCCGAGATTAAGTCAGTGGGTAA
GCACCCGAGATGGTCACTCCCTTGCGGATCGACTCGCCACGGAACTGGGA
GATATATTTAAGGGGAAAGTGGCCTTCTCGTTTTCTACATTACATTCCTG
A
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Coding sequence (CDS) from alignment at ScGOVlb_24226:1207756..1208406-

>Gvermi8138.t1 ID=Gvermi8138.t1|Name=Gvermi8138.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=651bp|location=Sequence derived from alignment at ScGOVlb_24226:1207756..1208406- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCTCAAGATCTTCGCAGAAAGCCCTCAACGTGGTTCGAATGTATGA
ACTGGGCTTTATACGATGTAGCCGATTACAACACCGAAGCATAGCCTTCA
GCGCTTTCGCAAAAGCTCTGGTTTCTATCCCATACTCTCAGATGAACATT
CAAACTTCTGTAAACAGCAGGTATCCGTTGAAGTCCTGGATGGATAAGTC
AGTTGTTTCAAGCCTGGGAAACAAACACATTTCTTTAGTCCGAGGACTGT
CTTCCGACTCTTTTCTGAAAGACGTAATGAATGAGGAATGGCCTGAGCAC
GAGTTCTCTGCCACTGCCGAAGCGTCGCTTGAAACCATAAGCGAAGTTAT
ATCCAACCTGAGCTTGGATTCAGTTAGCTGCTCTGATGATTTCGACGTCG
AATTCAGCCAGGGAGTGCTAACTGTTTCACTGGGCGACCATGGCACATAT
GTTCTAAACACGCAGACGCCAAACAGACAAATCTGGCTAAGCTCCCCATC
ATCGGGTCCATGGCGATATGCGTGGAATCCGAGATTAAGTCAGTGGGTAA
GCACCCGAGATGGTCACTCCCTTGCGGATCGACTCGCCACGGAACTGGGA
GATATATTTAAGGGGAAAGTGGCCTTCTCGTTTTCTACATTACATTCCTG
A
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