Gvermi8137.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8137.t1
Unique NameGvermi8137.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length617
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:1205719..1207662 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog38727.Pavir.Ab02834.1.p
PFAMsDUF3548,RabGAP-TBC
Max annot lvl35493|Streptophyta
KEGG koko:K20168
KEGG Pathwayko04137,map04137
GOsGO:0003674,GO:0005096,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0006886,GO:0008047,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0017016,GO:0017137,GO:0019899,GO:0030234,GO:0030695,GO:0031267,GO:0031338,GO:0032879,GO:0033036,GO:0033043,GO:0034613,GO:0042886,GO:0043085,GO:0043087,GO:0043547,GO:0044093,GO:0044424,GO:0044464,GO:0045184,GO:0046907,GO:0050789,GO:0050790,GO:0050794,GO:0051020,GO:0051049,GO:0051128,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0060589,GO:0060627,GO:0065007,GO:0065009,GO:0070727,GO:0071702,GO:0071705,GO:0090630,GO:0098772
Evalue1.96e-68
EggNOG OGsCOG5210@1|root,KOG2197@2759|Eukaryota,37NTR@33090|Viridiplantae,3GDPB@35493|Streptophyta,3KQFS@4447|Liliopsida,3I9Q0@38820|Poales
DescriptionDomain of unknown function (DUF3548)
COG categoryT
BRITEko00000,ko00001,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8137Gvermi8137Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 1205719..1207662 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8137.t1Gvermi8137.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 1205719..1207662 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8137.t1.start1Gvermi8137.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 1205719..1205721 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8137.t1.CDS1Gvermi8137.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 1205719..1206972 +
Gvermi8137.t1.CDS2Gvermi8137.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 1207066..1207662 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8137.t1.exon1Gvermi8137.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 1205719..1206972 +
Gvermi8137.t1.exon2Gvermi8137.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 1207066..1207662 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8137.t1.intron1Gvermi8137.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 1206973..1207065 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8137.t1.stop1Gvermi8137.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 1207660..1207662 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8137.t1 ID=Gvermi8137.t1|Name=Gvermi8137.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=617bp
MPQVDHPTLPPSQPTAAVRPTPPVSELNPAHTHSETGRQPIIHYNSLSVD
CRPPHAAHSIRGTLQIVEHDLGAKHDLWNIQVYFIWRPRGTEHEHDKESA
IHPERVKPIKVSVDEFLTIRSQFTLPLPTLTIHLNGARPLGDFFFPNGPD
AAMKFFHTLRDHVQTLEMSDSYRPGDLYAVEKKNRMRRVAPSLKYADDGD
HGEDFTDLFNDLSIGNRSLRRHGAPARDRAENAREDLGITLLSHFARITQ
AARELGDGISTLLDEEKRVKEQQRRERESAARRRALDIYAEVVASSSEEQ
ELPRRLALDEPRGAPVSVSAWMDSLDEKGKLKDIEVMKRAIFAGGIESDA
RRELWPFVLGFYAWDSSSEQRSELLDKKRAEYDGMKRQWEALRSSAKADE
EKSLQDDPNAVSVDRRQRDDSEGTMVMGTILNVYAEYDNTITYCQGMSDF
LAPILYVIGIEEEAVVFWCFESLMRRIEANFRHDQSGIRRQLAMLKRLMD
VADPELSEFFKQTDPDYYTCFRWILVRFKREFAFNSICRLWEALWSRSVG
GDDLHIFVAAGLLIAQRRDILKLEEAAFDQLLRYINDMSMRIDEGFALRE
GEICFLKYGEHSHVIS*
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spliced messenger RNA

>Gvermi8137.t1 ID=Gvermi8137.t1|Name=Gvermi8137.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1851bp|location=Sequence derived from alignment at ScGOVlb_24226:1205719..1207662+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCAAGTCGACCACCCCACTCTTCCTCCATCGCAGCCAACTGCGGC
GGTGCGCCCCACCCCACCAGTTTCTGAGCTGAACCCAGCACACACCCATT
CTGAAACTGGAAGACAGCCGATCATTCATTACAACTCCCTCAGTGTTGAT
TGTCGTCCACCGCATGCCGCTCACTCCATACGCGGTACGCTGCAGATTGT
CGAACACGACCTGGGCGCCAAACACGATCTGTGGAATATACAAGTATATT
TCATATGGCGTCCGAGGGGCACCGAACATGAGCACGACAAAGAGAGCGCC
ATACACCCTGAGCGCGTCAAGCCTATCAAGGTTTCCGTTGATGAATTTCT
TACCATTCGCTCTCAATTCACTCTCCCGCTTCCAACCCTCACCATTCACC
TCAACGGGGCCCGCCCTCTGGGTGATTTCTTTTTTCCAAATGGTCCTGAT
GCCGCTATGAAATTCTTTCATACTCTGCGCGACCATGTGCAAACTCTTGA
GATGAGCGATTCGTATCGGCCGGGCGACTTGTATGCCGTTGAAAAGAAGA
ACCGCATGCGTCGTGTCGCCCCTTCCCTCAAGTATGCCGATGACGGCGAT
CACGGGGAAGACTTTACCGATTTGTTCAACGATCTGAGCATCGGAAACAG
ATCGCTCCGAAGGCATGGTGCCCCAGCACGTGATAGGGCTGAGAATGCAC
GGGAGGACCTTGGGATCACGCTTCTTTCGCACTTTGCGCGCATTACTCAA
GCAGCGCGCGAACTCGGCGATGGGATTTCTACCTTGTTGGATGaagagaa
acgagtaaaagaacagcagcgtagagaaagagaaagCGCCGCTCGTCGTC
GCGCGCTCGACATATATGCCGAAGTTGTTGCGAGCTCCAGTGAAGAACAA
GAGTTGCCGCGCCGTTTAGCACTCGATGAACCCCGCGGTGCCCCGGTTAG
CGTGTCTGCATGGATGGATTCGCTTGATGAAAAAGGTAAGTTAAAAGATA
TTGAAGTAATGAAGCGAGCCATCTTTGCTGGGGGTATTGAGAGCGATGCG
CGACGTGAATTGTGGCCGTTTGTACTTGGCTTTTATGCCTGGGACTCAAG
CTCTGAGCAACGTTCGGAGCTTCTAGACAAAAAGCGTGCAGAGTATGATG
GAATGAAGCGTCAGTGGGAGGCATTGCGTTCTTCTGCAAAGGCTGATGAG
GAAAAATCCCTTCAGGATGATCCAAACGCAGTTTCTGTCGATCGACGACA
AAGGGATGATTCTGAAGGTACCATGGTGATGGGAACGATCCTGAACGTAT
ATGCTGAATACGACAACACAATTACATATTGTCAAGGGATGTCGGATTTT
CTGGCGCCAATTTTATACGTGATTGGTATTGAAGAAGAGGCAGTTGTTTT
CTGGTGTTTCGAGTCACTCATGCGCCGTATTGAGGCCAACTTCAGACATG
ATCAAAGCGGTATTCGTCGACAGCTTGCAATGCTTAAACGTTTAATGGAC
GTAGCTGATCCCGAACTTTCAGAATTCTTCAAGCAAACGGACCCAGATTA
TTACACATGCTTCAGATGGATATTGGTTAGATTTAAGAGAGAATTTGCTT
TCAATTCCATATGTCGCCTGTGGGAAGCGCTATGGAGTCGATCGGTTGGA
GGAGACGATCTTCACATTTTCGTCGCTGCGGGGCTTCTCATTGCTCAACG
CCGAGATATCCTGAAATTGGAGGAAGCGGCTTTCGACCAATTGCTTAGAT
ACATCAATGACATGAGCATGCGAATTGATGAAGGTTTTGCTCTGCGAGAG
GGGGAAATATGTTTCCTTAAATATGGTGAACACAGTCATGTCATTTCATA
A
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protein sequence of Gvermi8137.t1

>Gvermi8137.t1 ID=Gvermi8137.t1|Name=Gvermi8137.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=617bp
MPQVDHPTLPPSQPTAAVRPTPPVSELNPAHTHSETGRQPIIHYNSLSVD
CRPPHAAHSIRGTLQIVEHDLGAKHDLWNIQVYFIWRPRGTEHEHDKESA
IHPERVKPIKVSVDEFLTIRSQFTLPLPTLTIHLNGARPLGDFFFPNGPD
AAMKFFHTLRDHVQTLEMSDSYRPGDLYAVEKKNRMRRVAPSLKYADDGD
HGEDFTDLFNDLSIGNRSLRRHGAPARDRAENAREDLGITLLSHFARITQ
AARELGDGISTLLDEEKRVKEQQRRERESAARRRALDIYAEVVASSSEEQ
ELPRRLALDEPRGAPVSVSAWMDSLDEKGKLKDIEVMKRAIFAGGIESDA
RRELWPFVLGFYAWDSSSEQRSELLDKKRAEYDGMKRQWEALRSSAKADE
EKSLQDDPNAVSVDRRQRDDSEGTMVMGTILNVYAEYDNTITYCQGMSDF
LAPILYVIGIEEEAVVFWCFESLMRRIEANFRHDQSGIRRQLAMLKRLMD
VADPELSEFFKQTDPDYYTCFRWILVRFKREFAFNSICRLWEALWSRSVG
GDDLHIFVAAGLLIAQRRDILKLEEAAFDQLLRYINDMSMRIDEGFALRE
GEICFLKYGEHSHVIS*
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mRNA from alignment at ScGOVlb_24226:1205719..1207662+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8137.t1 ID=Gvermi8137.t1|Name=Gvermi8137.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1944bp|location=Sequence derived from alignment at ScGOVlb_24226:1205719..1207662+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTCAAGTCGACCACCCCACTCTTCCTCCATCGCAGCCAACTGCGGC
GGTGCGCCCCACCCCACCAGTTTCTGAGCTGAACCCAGCACACACCCATT
CTGAAACTGGAAGACAGCCGATCATTCATTACAACTCCCTCAGTGTTGAT
TGTCGTCCACCGCATGCCGCTCACTCCATACGCGGTACGCTGCAGATTGT
CGAACACGACCTGGGCGCCAAACACGATCTGTGGAATATACAAGTATATT
TCATATGGCGTCCGAGGGGCACCGAACATGAGCACGACAAAGAGAGCGCC
ATACACCCTGAGCGCGTCAAGCCTATCAAGGTTTCCGTTGATGAATTTCT
TACCATTCGCTCTCAATTCACTCTCCCGCTTCCAACCCTCACCATTCACC
TCAACGGGGCCCGCCCTCTGGGTGATTTCTTTTTTCCAAATGGTCCTGAT
GCCGCTATGAAATTCTTTCATACTCTGCGCGACCATGTGCAAACTCTTGA
GATGAGCGATTCGTATCGGCCGGGCGACTTGTATGCCGTTGAAAAGAAGA
ACCGCATGCGTCGTGTCGCCCCTTCCCTCAAGTATGCCGATGACGGCGAT
CACGGGGAAGACTTTACCGATTTGTTCAACGATCTGAGCATCGGAAACAG
ATCGCTCCGAAGGCATGGTGCCCCAGCACGTGATAGGGCTGAGAATGCAC
GGGAGGACCTTGGGATCACGCTTCTTTCGCACTTTGCGCGCATTACTCAA
GCAGCGCGCGAACTCGGCGATGGGATTTCTACCTTGTTGGATGaagagaa
acgagtaaaagaacagcagcgtagagaaagagaaagCGCCGCTCGTCGTC
GCGCGCTCGACATATATGCCGAAGTTGTTGCGAGCTCCAGTGAAGAACAA
GAGTTGCCGCGCCGTTTAGCACTCGATGAACCCCGCGGTGCCCCGGTTAG
CGTGTCTGCATGGATGGATTCGCTTGATGAAAAAGGTAAGTTAAAAGATA
TTGAAGTAATGAAGCGAGCCATCTTTGCTGGGGGTATTGAGAGCGATGCG
CGACGTGAATTGTGGCCGTTTGTACTTGGCTTTTATGCCTGGGACTCAAG
CTCTGAGCAACGTTCGGAGCTTCTAGACAAAAAGCGTGCAGAGTATGATG
GAATGAAGCGTCAGTGGGAGGCATTGCGTTCTTCTGCAAAGGCTGATGAG
GAAAAATCCCTTCAGGATGATCCAAACGCAGTTTCTGTCGATCGACGACA
AAGGGTGAGCACACAGCACGCCAATTATCTTGAAACCGAAGAGCAAATAA
TGAAAGATATCATTCGTACTGATCGCAGTGTCGATTTCTTTGAGCAGGAT
GATTCTGAAGGTACCATGGTGATGGGAACGATCCTGAACGTATATGCTGA
ATACGACAACACAATTACATATTGTCAAGGGATGTCGGATTTTCTGGCGC
CAATTTTATACGTGATTGGTATTGAAGAAGAGGCAGTTGTTTTCTGGTGT
TTCGAGTCACTCATGCGCCGTATTGAGGCCAACTTCAGACATGATCAAAG
CGGTATTCGTCGACAGCTTGCAATGCTTAAACGTTTAATGGACGTAGCTG
ATCCCGAACTTTCAGAATTCTTCAAGCAAACGGACCCAGATTATTACACA
TGCTTCAGATGGATATTGGTTAGATTTAAGAGAGAATTTGCTTTCAATTC
CATATGTCGCCTGTGGGAAGCGCTATGGAGTCGATCGGTTGGAGGAGACG
ATCTTCACATTTTCGTCGCTGCGGGGCTTCTCATTGCTCAACGCCGAGAT
ATCCTGAAATTGGAGGAAGCGGCTTTCGACCAATTGCTTAGATACATCAA
TGACATGAGCATGCGAATTGATGAAGGTTTTGCTCTGCGAGAGGGGGAAA
TATGTTTCCTTAAATATGGTGAACACAGTCATGTCATTTCATAA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:1205719..1207662+

>Gvermi8137.t1 ID=Gvermi8137.t1|Name=Gvermi8137.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1851bp|location=Sequence derived from alignment at ScGOVlb_24226:1205719..1207662+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTCAAGTCGACCACCCCACTCTTCCTCCATCGCAGCCAACTGCGGC
GGTGCGCCCCACCCCACCAGTTTCTGAGCTGAACCCAGCACACACCCATT
CTGAAACTGGAAGACAGCCGATCATTCATTACAACTCCCTCAGTGTTGAT
TGTCGTCCACCGCATGCCGCTCACTCCATACGCGGTACGCTGCAGATTGT
CGAACACGACCTGGGCGCCAAACACGATCTGTGGAATATACAAGTATATT
TCATATGGCGTCCGAGGGGCACCGAACATGAGCACGACAAAGAGAGCGCC
ATACACCCTGAGCGCGTCAAGCCTATCAAGGTTTCCGTTGATGAATTTCT
TACCATTCGCTCTCAATTCACTCTCCCGCTTCCAACCCTCACCATTCACC
TCAACGGGGCCCGCCCTCTGGGTGATTTCTTTTTTCCAAATGGTCCTGAT
GCCGCTATGAAATTCTTTCATACTCTGCGCGACCATGTGCAAACTCTTGA
GATGAGCGATTCGTATCGGCCGGGCGACTTGTATGCCGTTGAAAAGAAGA
ACCGCATGCGTCGTGTCGCCCCTTCCCTCAAGTATGCCGATGACGGCGAT
CACGGGGAAGACTTTACCGATTTGTTCAACGATCTGAGCATCGGAAACAG
ATCGCTCCGAAGGCATGGTGCCCCAGCACGTGATAGGGCTGAGAATGCAC
GGGAGGACCTTGGGATCACGCTTCTTTCGCACTTTGCGCGCATTACTCAA
GCAGCGCGCGAACTCGGCGATGGGATTTCTACCTTGTTGGATGaagagaa
acgagtaaaagaacagcagcgtagagaaagagaaagCGCCGCTCGTCGTC
GCGCGCTCGACATATATGCCGAAGTTGTTGCGAGCTCCAGTGAAGAACAA
GAGTTGCCGCGCCGTTTAGCACTCGATGAACCCCGCGGTGCCCCGGTTAG
CGTGTCTGCATGGATGGATTCGCTTGATGAAAAAGGTAAGTTAAAAGATA
TTGAAGTAATGAAGCGAGCCATCTTTGCTGGGGGTATTGAGAGCGATGCG
CGACGTGAATTGTGGCCGTTTGTACTTGGCTTTTATGCCTGGGACTCAAG
CTCTGAGCAACGTTCGGAGCTTCTAGACAAAAAGCGTGCAGAGTATGATG
GAATGAAGCGTCAGTGGGAGGCATTGCGTTCTTCTGCAAAGGCTGATGAG
GAAAAATCCCTTCAGGATGATCCAAACGCAGTTTCTGTCGATCGACGACA
AAGGGATGATTCTGAAGGTACCATGGTGATGGGAACGATCCTGAACGTAT
ATGCTGAATACGACAACACAATTACATATTGTCAAGGGATGTCGGATTTT
CTGGCGCCAATTTTATACGTGATTGGTATTGAAGAAGAGGCAGTTGTTTT
CTGGTGTTTCGAGTCACTCATGCGCCGTATTGAGGCCAACTTCAGACATG
ATCAAAGCGGTATTCGTCGACAGCTTGCAATGCTTAAACGTTTAATGGAC
GTAGCTGATCCCGAACTTTCAGAATTCTTCAAGCAAACGGACCCAGATTA
TTACACATGCTTCAGATGGATATTGGTTAGATTTAAGAGAGAATTTGCTT
TCAATTCCATATGTCGCCTGTGGGAAGCGCTATGGAGTCGATCGGTTGGA
GGAGACGATCTTCACATTTTCGTCGCTGCGGGGCTTCTCATTGCTCAACG
CCGAGATATCCTGAAATTGGAGGAAGCGGCTTTCGACCAATTGCTTAGAT
ACATCAATGACATGAGCATGCGAATTGATGAAGGTTTTGCTCTGCGAGAG
GGGGAAATATGTTTCCTTAAATATGGTGAACACAGTCATGTCATTTCATA
A
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