Gvermi8136.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8136.t1
Unique NameGvermi8136.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length250
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:1204512..1205351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog90675.XP_010508107.1
Preferred namePMM
PFAMsPMM
Max annot lvl35493|Streptophyta
KEGG rclassRC00408
KEGG koko:K17497
KEGG ReactionR01818
KEGG Pathwayko00051,ko00520,ko01100,ko01110,ko01130,map00051,map00520,map01100,map01110,map01130
KEGG ModuleM00114
GOsGO:0003674,GO:0003824,GO:0004615,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006013,GO:0006082,GO:0006464,GO:0006486,GO:0006487,GO:0006605,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006970,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009108,GO:0009110,GO:0009628,GO:0009651,GO:0009987,GO:0015031,GO:0015833,GO:0016051,GO:0016053,GO:0016853,GO:0016866,GO:0016868,GO:0019318,GO:0019538,GO:0019752,GO:0019852,GO:0019853,GO:0033036,GO:0033365,GO:0034613,GO:0034645,GO:0036211,GO:0042364,GO:0042886,GO:0043170,GO:0043412,GO:0043413,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045047,GO:0045184,GO:0046364,GO:0046394,GO:0046907,GO:0050896,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051641,GO:0051649,GO:0070085,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
Evalue6.48e-111
EggNOG OGsCOG0561@1|root,KOG3189@2759|Eukaryota,37JBP@33090|Viridiplantae,3G95V@35493|Streptophyta,3HNN0@3699|Brassicales
EC5.4.2.8
Descriptionin the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8136Gvermi8136Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 1204512..1205351 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8136.t1Gvermi8136.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 1204512..1205351 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8136.t1.start1Gvermi8136.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 1204512..1204514 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8136.t1.CDS1Gvermi8136.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 1204512..1204589 +
Gvermi8136.t1.CDS2Gvermi8136.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 1204680..1205351 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8136.t1.exon1Gvermi8136.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 1204512..1204589 +
Gvermi8136.t1.exon2Gvermi8136.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 1204680..1205351 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8136.t1.intron1Gvermi8136.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 1204590..1204679 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8136.t1.stop1Gvermi8136.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 1205349..1205351 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8136.t1 ID=Gvermi8136.t1|Name=Gvermi8136.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=250bp
MDVSDNRAQDVIALFDVDGTLTLPRLTATKEMIEFLAELRKSVIIGMVGG
SDLKKQKEQLGDGVLDMFDYTFSENGLVAYKGTELIAEASITAHLGEQRL
QKLINFCLRYISELQIPVKRGTFIEFRKGMLNVSPIGRNCSQKERCEFEV
YDKQAHVREQFVEVLKKEFADYSLTFSIGGQISFDVFPSGWDKTYALQYV
DHIKQIHFFGDKTYPGGNDYEIYESPRTIGHSVKDPHETMKVCRDLFLS*
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spliced messenger RNA

>Gvermi8136.t1 ID=Gvermi8136.t1|Name=Gvermi8136.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=750bp|location=Sequence derived from alignment at ScGOVlb_24226:1204512..1205351+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGTCTCCGATAATCGCGCGCAGGATGTCATCGCCCTTTTCGACGT
CGATGGCACGCTCACGTTGCCGCGTCTCACTGCCACAAAGGAGATGATCG
AGTTCCTGGCCGAGCTGCGCAAGTCGGTCATCATCGGCATGGTGGGCGGC
TCGGACCTTAAAAAGCAGAAAGAGCAACTGGGAGACGGTGTGCTCGATAT
GTTCGACTACACTTTCTCCGAGAACGGGCTGGTGGCGTACAAGGGCACAG
AGCTTATCGCCGAGGCTAGCATCACTGCTCACCTAGGCGAACAGCGTCTG
CAAAAACTGATCAACTTCTGTTTGCGCTACATTTCGGAGCTGCAAATTCC
CGTCAAGCGTGGTACCTTCATCGAGTTCCGAAAGGGCATGCTCAACGTGT
CGCCCATCGGCAGGAACTGCAGCCAGAAGGAGCGATGTGAGTTTGAGGTG
TACGACAAGCAGGCGCACGTCAGAGAGCAGTTTGTTGAGGTGCTCAAGAA
GGAGTTTGCCGATTACAGCCTCACTTTTTCCATCGGCGGACAGATTTCGT
TTGACGTGTTCCCCTCTGGCTGGGACAAGACGTACGCCCTGCAATACGTC
GACCACATCAAGCAAATTCACTTCTTTGGCGATAAGACGTATCCCGGTGG
AAATGACTACGAGATATACGAGTCGCCAAGGACGATTGGCCACAGCGTCA
AGGACCCGCACGAGACTATGAAAGTGTGCCGCGACCTGTTCTTGTCGTAG
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protein sequence of Gvermi8136.t1

>Gvermi8136.t1 ID=Gvermi8136.t1|Name=Gvermi8136.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=250bp
MDVSDNRAQDVIALFDVDGTLTLPRLTATKEMIEFLAELRKSVIIGMVGG
SDLKKQKEQLGDGVLDMFDYTFSENGLVAYKGTELIAEASITAHLGEQRL
QKLINFCLRYISELQIPVKRGTFIEFRKGMLNVSPIGRNCSQKERCEFEV
YDKQAHVREQFVEVLKKEFADYSLTFSIGGQISFDVFPSGWDKTYALQYV
DHIKQIHFFGDKTYPGGNDYEIYESPRTIGHSVKDPHETMKVCRDLFLS*
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mRNA from alignment at ScGOVlb_24226:1204512..1205351+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8136.t1 ID=Gvermi8136.t1|Name=Gvermi8136.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=840bp|location=Sequence derived from alignment at ScGOVlb_24226:1204512..1205351+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATGTCTCCGATAATCGCGCGCAGGATGTCATCGCCCTTTTCGACGT
CGATGGCACGCTCACGTTGCCGCGTCTCGTACGTGATCAACTCCCCGTTG
TGTGCTACACTGCAACGCTGGCGGCGCTCCTTTCGTACTGACTGTATCGT
GCTTTGGCGTGCGCGAAGACTGCCACAAAGGAGATGATCGAGTTCCTGGC
CGAGCTGCGCAAGTCGGTCATCATCGGCATGGTGGGCGGCTCGGACCTTA
AAAAGCAGAAAGAGCAACTGGGAGACGGTGTGCTCGATATGTTCGACTAC
ACTTTCTCCGAGAACGGGCTGGTGGCGTACAAGGGCACAGAGCTTATCGC
CGAGGCTAGCATCACTGCTCACCTAGGCGAACAGCGTCTGCAAAAACTGA
TCAACTTCTGTTTGCGCTACATTTCGGAGCTGCAAATTCCCGTCAAGCGT
GGTACCTTCATCGAGTTCCGAAAGGGCATGCTCAACGTGTCGCCCATCGG
CAGGAACTGCAGCCAGAAGGAGCGATGTGAGTTTGAGGTGTACGACAAGC
AGGCGCACGTCAGAGAGCAGTTTGTTGAGGTGCTCAAGAAGGAGTTTGCC
GATTACAGCCTCACTTTTTCCATCGGCGGACAGATTTCGTTTGACGTGTT
CCCCTCTGGCTGGGACAAGACGTACGCCCTGCAATACGTCGACCACATCA
AGCAAATTCACTTCTTTGGCGATAAGACGTATCCCGGTGGAAATGACTAC
GAGATATACGAGTCGCCAAGGACGATTGGCCACAGCGTCAAGGACCCGCA
CGAGACTATGAAAGTGTGCCGCGACCTGTTCTTGTCGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_24226:1204512..1205351+

>Gvermi8136.t1 ID=Gvermi8136.t1|Name=Gvermi8136.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=750bp|location=Sequence derived from alignment at ScGOVlb_24226:1204512..1205351+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATGTCTCCGATAATCGCGCGCAGGATGTCATCGCCCTTTTCGACGT
CGATGGCACGCTCACGTTGCCGCGTCTCACTGCCACAAAGGAGATGATCG
AGTTCCTGGCCGAGCTGCGCAAGTCGGTCATCATCGGCATGGTGGGCGGC
TCGGACCTTAAAAAGCAGAAAGAGCAACTGGGAGACGGTGTGCTCGATAT
GTTCGACTACACTTTCTCCGAGAACGGGCTGGTGGCGTACAAGGGCACAG
AGCTTATCGCCGAGGCTAGCATCACTGCTCACCTAGGCGAACAGCGTCTG
CAAAAACTGATCAACTTCTGTTTGCGCTACATTTCGGAGCTGCAAATTCC
CGTCAAGCGTGGTACCTTCATCGAGTTCCGAAAGGGCATGCTCAACGTGT
CGCCCATCGGCAGGAACTGCAGCCAGAAGGAGCGATGTGAGTTTGAGGTG
TACGACAAGCAGGCGCACGTCAGAGAGCAGTTTGTTGAGGTGCTCAAGAA
GGAGTTTGCCGATTACAGCCTCACTTTTTCCATCGGCGGACAGATTTCGT
TTGACGTGTTCCCCTCTGGCTGGGACAAGACGTACGCCCTGCAATACGTC
GACCACATCAAGCAAATTCACTTCTTTGGCGATAAGACGTATCCCGGTGG
AAATGACTACGAGATATACGAGTCGCCAAGGACGATTGGCCACAGCGTCA
AGGACCCGCACGAGACTATGAAAGTGTGCCGCGACCTGTTCTTGTCGTAG
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