Gvermi8087.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8087.t1
Unique NameGvermi8087.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length109
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:959834..960354 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMJ212CT
Preferred nameCYCS
PFAMsCytochrom_C
Max annot lvl2759|Eukaryota
KEGG rclassRC03151,RC03152
KEGG koko:K08738
KEGG TC3.D.4.6
KEGG ReactionR10151
KEGG Pathwayko00920,ko01100,ko01120,ko01524,ko02020,ko04115,ko04210,ko04214,ko04215,ko04932,ko05010,ko05012,ko05014,ko05016,ko05134,ko05145,ko05152,ko05161,ko05164,ko05167,ko05168,ko05200,ko05210,ko05222,ko05416,map00920,map01100,map01120,map01524,map02020,map04115,map04210,map04214,map04215,map04932,map05010,map05012,map05014,map05016,map05134,map05145,map05152,map05161,map05164,map05167,map05168,map05200,map05210,map05222,map05416
KEGG ModuleM00595
GOsGO:0000003,GO:0000159,GO:0002931,GO:0003006,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005758,GO:0005829,GO:0006091,GO:0006119,GO:0006122,GO:0006123,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006919,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007349,GO:0008150,GO:0008152,GO:0008219,GO:0008287,GO:0008635,GO:0009055,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009628,GO:0009629,GO:0009636,GO:0009653,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010310,GO:0010604,GO:0010646,GO:0010647,GO:0010727,GO:0010728,GO:0010730,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012501,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016999,GO:0017144,GO:0019222,GO:0019637,GO:0019646,GO:0019693,GO:0019866,GO:0019899,GO:0019953,GO:0020037,GO:0022412,GO:0022414,GO:0022603,GO:0022900,GO:0022904,GO:0023051,GO:0023052,GO:0023056,GO:0030154,GO:0030162,GO:0031090,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033554,GO:0034349,GO:0034465,GO:0034599,GO:0034641,GO:0035556,GO:0042221,GO:0042493,GO:0042743,GO:0042773,GO:0042775,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043209,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043280,GO:0043281,GO:0043457,GO:0043467,GO:0044093,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044703,GO:0045155,GO:0045333,GO:0045595,GO:0045862,GO:0046034,GO:0046483,GO:0046668,GO:0046669,GO:0046688,GO:0046906,GO:0048037,GO:0048232,GO:0048468,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051186,GO:0051193,GO:0051195,GO:0051239,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051704,GO:0051716,GO:0052547,GO:0052548,GO:0055086,GO:0055114,GO:0060255,GO:0060284,GO:0065007,GO:0065009,GO:0070013,GO:0070469,GO:0070887,GO:0071704,GO:0071840,GO:0072521,GO:0072593,GO:0080090,GO:0097159,GO:0097190,GO:0097193,GO:1901135,GO:1901360,GO:1901363,GO:1901564,GO:1901700,GO:1901857,GO:1902494,GO:1902531,GO:1902533,GO:1903293,GO:1903426,GO:1903427,GO:2000026,GO:2000027,GO:2000116,GO:2000377,GO:2000378,GO:2001056,GO:2001233,GO:2001235,GO:2001242,GO:2001244
Evalue2.46e-53
EggNOG OGsCOG3474@1|root,KOG3453@2759|Eukaryota
Descriptionelectron transfer activity
COG categoryC
BiGG ReactioniMM904.YJR048W
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8087Gvermi8087Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 959834..960354 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8087.t1Gvermi8087.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 959834..960354 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8087.t1.start1Gvermi8087.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 959834..959836 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8087.t1.CDS1Gvermi8087.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 959834..959906 +
Gvermi8087.t1.CDS2Gvermi8087.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 960101..960354 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8087.t1.exon1Gvermi8087.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 959834..959906 +
Gvermi8087.t1.exon2Gvermi8087.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 960101..960354 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8087.t1.intron1Gvermi8087.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 959907..960100 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8087.t1.stop1Gvermi8087.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 960352..960354 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8087.t1 ID=Gvermi8087.t1|Name=Gvermi8087.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=109bp
MGVPDGNVDKGAKLFKTKCSQCHTYNQGGGTKQGPNLWGLFGRTAGTVEG
FAYTAANKNSGIIWSDQTLFDYLLNPKKYIKGTKMVFAGLKKEKDRADLI
AFLKANTQ*
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spliced messenger RNA

>Gvermi8087.t1 ID=Gvermi8087.t1|Name=Gvermi8087.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=327bp|location=Sequence derived from alignment at ScGOVlb_24226:959834..960354+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGTCCCTGACGGCAATGTTGACAAGGGAGCAAAGCTCTTCAAGAC
CAAGTGCTCCCAATGTCATACCTACAATCAAGGCGGTGGCACCAAGCAAG
GACCCAACCTTTGGGGCCTCTTCGGTCGCACAGCCGGCACCGTTGAGGGC
TTTGCTTACACCGCCGCCAACAAGAATTCCGGTATTATCTGGAGTGATCA
GACTTTGTTTGACTACCTGCTCAACCCCAAGAAGTACATCAAGGGTACTA
AGATGGTTTTCGCTGGTTTGAAGAAGGAGAAAGATCGTGCCGATCTTATT
GCATTTCTCAAGGCTAACACTCAATAA
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protein sequence of Gvermi8087.t1

>Gvermi8087.t1 ID=Gvermi8087.t1|Name=Gvermi8087.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=109bp
MGVPDGNVDKGAKLFKTKCSQCHTYNQGGGTKQGPNLWGLFGRTAGTVEG
FAYTAANKNSGIIWSDQTLFDYLLNPKKYIKGTKMVFAGLKKEKDRADLI
AFLKANTQ*
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mRNA from alignment at ScGOVlb_24226:959834..960354+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8087.t1 ID=Gvermi8087.t1|Name=Gvermi8087.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=521bp|location=Sequence derived from alignment at ScGOVlb_24226:959834..960354+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGAGTCCCTGACGGCAATGTTGACAAGGGAGCAAAGCTCTTCAAGAC
CAAGTGCTCCCAATGTCATACCTGTACGTTGTGACCCTTGCATCCCCGCC
AGCCCCGTCTTACGTACCCCACCACCTTGCAAGCGACTGCCACATTCGCA
TCGCGAACCAAATTCGTTCTGACATCTAGATCGCACTCGTCGTCTCCACT
CGGCCGCATCTGCCGCCTCCCACCCCAATCTCACCCATCTTACAACGCGC
TTCGCAAACCTACACAGACAATCAAGGCGGTGGCACCAAGCAAGGACCCA
ACCTTTGGGGCCTCTTCGGTCGCACAGCCGGCACCGTTGAGGGCTTTGCT
TACACCGCCGCCAACAAGAATTCCGGTATTATCTGGAGTGATCAGACTTT
GTTTGACTACCTGCTCAACCCCAAGAAGTACATCAAGGGTACTAAGATGG
TTTTCGCTGGTTTGAAGAAGGAGAAAGATCGTGCCGATCTTATTGCATTT
CTCAAGGCTAACACTCAATAA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:959834..960354+

>Gvermi8087.t1 ID=Gvermi8087.t1|Name=Gvermi8087.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=327bp|location=Sequence derived from alignment at ScGOVlb_24226:959834..960354+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGAGTCCCTGACGGCAATGTTGACAAGGGAGCAAAGCTCTTCAAGAC
CAAGTGCTCCCAATGTCATACCTACAATCAAGGCGGTGGCACCAAGCAAG
GACCCAACCTTTGGGGCCTCTTCGGTCGCACAGCCGGCACCGTTGAGGGC
TTTGCTTACACCGCCGCCAACAAGAATTCCGGTATTATCTGGAGTGATCA
GACTTTGTTTGACTACCTGCTCAACCCCAAGAAGTACATCAAGGGTACTA
AGATGGTTTTCGCTGGTTTGAAGAAGGAGAAAGATCGTGCCGATCTTATT
GCATTTCTCAAGGCTAACACTCAATAA
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