Gvermi8086.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8086.t1
Unique NameGvermi8086.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length243
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:958011..958824 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D8LK30
PFAMsHAD_2
Max annot lvl2759|Eukaryota
GOsGO:0003674,GO:0003824,GO:0003850,GO:0004346,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019203,GO:0042578,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0050308,GO:0050309,GO:0071944
Evalue1.89e-47
EggNOG OGsCOG0637@1|root,KOG2914@2759|Eukaryota
Descriptionpseudouridine 5'-phosphatase activity
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8086Gvermi8086Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 958011..958824 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8086.t1Gvermi8086.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 958011..958824 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8086.t1.stop1Gvermi8086.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 958011..958013 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8086.t1.CDS1Gvermi8086.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 958011..958656 -
Gvermi8086.t1.CDS2Gvermi8086.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 958742..958824 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8086.t1.exon1Gvermi8086.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 958011..958656 -
Gvermi8086.t1.exon2Gvermi8086.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 958742..958824 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8086.t1.intron1Gvermi8086.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 958657..958741 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8086.t1.start1Gvermi8086.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 958822..958824 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8086.t1 ID=Gvermi8086.t1|Name=Gvermi8086.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=243bp
MSTEHPSTLPPESLQGRLSAIFFDLDGTCINSDSIHFECYRDTLLDLVPA
FNGGSPITREFYDLEMSGRQNPHLVAQILPQLSLEQQTRVWKTKESRYEH
VISRGVSPIAGLKQLLARCSQQDIVSYVVTNAPKGTCAKTMASIGIAEHF
GGRVVVAEECDHPKPHPAPYLRALQLAGVSASEAIAFEDSPSGTTSATAA
GLLTVGMRSTQTDEALRAFGAAFTVSDYNDPKLASALSMWLK*
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spliced messenger RNA

>Gvermi8086.t1 ID=Gvermi8086.t1|Name=Gvermi8086.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=729bp|location=Sequence derived from alignment at ScGOVlb_24226:958011..958824- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAACTGAACATCCCTCCACCCTGCCGCCCGAGTCTCTACAGGGACG
GCTCTCAGCCATTTTCTTCGACTTGGACGGAACCTGCATCAACAGCGATT
CCATTCACTTTGAATGCTACCGCGACACGCTCCTGGACCTGGTGCCCGCC
TTCAACGGCGGAAGCCCGATAACTAGAGAGTTCTACGACTTGGAGATGTC
CGGCCGTCAAAACCCACACCTCGTGGCCCAAATTCTGCCGCAACTATCGC
TGGAACAGCAGACTCGCGTGTGGAAAACGAAGGAAAGCCGCTACGAGCAC
GTCATATCGCGCGGCGTGTCGCCCATAGCCGGGCTCAAGCAGCTTCTCGC
GCGTTGCAGCCAGCAGGACATCGTTTCGTACGTCGTCACAAACGCCCCCA
AGGGAACGTGCGCAAAGACCATGGCGTCCATAGGAATCGCCGAGCACTTT
GGGGGGCGCGTTGTGGTGGCGGAAGAGTGCGACCACCCCAAACCGCACCC
TGCGCCATATCTTCGCGCACTGCAACTCGCCGGCGTGTCGGCCAGCGAGG
CCATTGCGTTCGAAGACTCGCCCAGTGGCACCACCAGCGCCACGGCCGCG
GGGCTGCTGACGGTGGGGATGCGTTCAACACAGACTGATGAAGCATTGCG
TGCGTTTGGCGCCGCTTTTACTGTGAGCGATTACAATGACCCGAAACTTG
CCAGTGCGTTATCTATGTGGCTCAAGTAG
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protein sequence of Gvermi8086.t1

>Gvermi8086.t1 ID=Gvermi8086.t1|Name=Gvermi8086.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=243bp
MSTEHPSTLPPESLQGRLSAIFFDLDGTCINSDSIHFECYRDTLLDLVPA
FNGGSPITREFYDLEMSGRQNPHLVAQILPQLSLEQQTRVWKTKESRYEH
VISRGVSPIAGLKQLLARCSQQDIVSYVVTNAPKGTCAKTMASIGIAEHF
GGRVVVAEECDHPKPHPAPYLRALQLAGVSASEAIAFEDSPSGTTSATAA
GLLTVGMRSTQTDEALRAFGAAFTVSDYNDPKLASALSMWLK*
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mRNA from alignment at ScGOVlb_24226:958011..958824-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8086.t1 ID=Gvermi8086.t1|Name=Gvermi8086.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=814bp|location=Sequence derived from alignment at ScGOVlb_24226:958011..958824- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCAACTGAACATCCCTCCACCCTGCCGCCCGAGTCTCTACAGGGACG
GCTCTCAGCCATTTTCTTCGACTTGGACGGAACGTACGTGCTTTCCAGTC
CACCATGACCCCAGTCTCTCACCCATTCCCGCGCTAACCAATGCTCACGA
TGATGCGCGTTTCCGCAGCTGCATCAACAGCGATTCCATTCACTTTGAAT
GCTACCGCGACACGCTCCTGGACCTGGTGCCCGCCTTCAACGGCGGAAGC
CCGATAACTAGAGAGTTCTACGACTTGGAGATGTCCGGCCGTCAAAACCC
ACACCTCGTGGCCCAAATTCTGCCGCAACTATCGCTGGAACAGCAGACTC
GCGTGTGGAAAACGAAGGAAAGCCGCTACGAGCACGTCATATCGCGCGGC
GTGTCGCCCATAGCCGGGCTCAAGCAGCTTCTCGCGCGTTGCAGCCAGCA
GGACATCGTTTCGTACGTCGTCACAAACGCCCCCAAGGGAACGTGCGCAA
AGACCATGGCGTCCATAGGAATCGCCGAGCACTTTGGGGGGCGCGTTGTG
GTGGCGGAAGAGTGCGACCACCCCAAACCGCACCCTGCGCCATATCTTCG
CGCACTGCAACTCGCCGGCGTGTCGGCCAGCGAGGCCATTGCGTTCGAAG
ACTCGCCCAGTGGCACCACCAGCGCCACGGCCGCGGGGCTGCTGACGGTG
GGGATGCGTTCAACACAGACTGATGAAGCATTGCGTGCGTTTGGCGCCGC
TTTTACTGTGAGCGATTACAATGACCCGAAACTTGCCAGTGCGTTATCTA
TGTGGCTCAAGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_24226:958011..958824-

>Gvermi8086.t1 ID=Gvermi8086.t1|Name=Gvermi8086.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=729bp|location=Sequence derived from alignment at ScGOVlb_24226:958011..958824- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCAACTGAACATCCCTCCACCCTGCCGCCCGAGTCTCTACAGGGACG
GCTCTCAGCCATTTTCTTCGACTTGGACGGAACCTGCATCAACAGCGATT
CCATTCACTTTGAATGCTACCGCGACACGCTCCTGGACCTGGTGCCCGCC
TTCAACGGCGGAAGCCCGATAACTAGAGAGTTCTACGACTTGGAGATGTC
CGGCCGTCAAAACCCACACCTCGTGGCCCAAATTCTGCCGCAACTATCGC
TGGAACAGCAGACTCGCGTGTGGAAAACGAAGGAAAGCCGCTACGAGCAC
GTCATATCGCGCGGCGTGTCGCCCATAGCCGGGCTCAAGCAGCTTCTCGC
GCGTTGCAGCCAGCAGGACATCGTTTCGTACGTCGTCACAAACGCCCCCA
AGGGAACGTGCGCAAAGACCATGGCGTCCATAGGAATCGCCGAGCACTTT
GGGGGGCGCGTTGTGGTGGCGGAAGAGTGCGACCACCCCAAACCGCACCC
TGCGCCATATCTTCGCGCACTGCAACTCGCCGGCGTGTCGGCCAGCGAGG
CCATTGCGTTCGAAGACTCGCCCAGTGGCACCACCAGCGCCACGGCCGCG
GGGCTGCTGACGGTGGGGATGCGTTCAACACAGACTGATGAAGCATTGCG
TGCGTTTGGCGCCGCTTTTACTGTGAGCGATTACAATGACCCGAAACTTG
CCAGTGCGTTATCTATGTGGCTCAAGTAG
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