Gvermi8050.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi8050.t1
Unique Name	Gvermi8050.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	355

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24226	contig	ScGOVlb_24226:887079..888143 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2903.EOD26982
Preferred name	GGPS1
PFAMs	polyprenyl_synt
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00279
KEGG ko	ko:K13789
KEGG Reaction	R01658,R02003,R02061
KEGG Pathway	ko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130
KEGG Module	M00364,M00366
Evalue	1.56e-121
EggNOG OGs	COG0142@1\|root,KOG0776@2759\|Eukaryota
EC	2.5.1.1,2.5.1.10,2.5.1.29
Description	isoprenoid biosynthetic process
COG category	H
BiGG Reaction	iRC1080.CRv4_Au5_s12_g2763_t1
BRITE	ko00000,ko00001,ko00002,ko01000,ko01006

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi8050	Gvermi8050	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24226 887079..888143 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8050.t1.start1	Gvermi8050.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24226 887079..887081 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8050.t1.CDS1	Gvermi8050.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24226 887079..888143 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8050.t1.exon1	Gvermi8050.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24226 887079..888143 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8050.t1.stop1	Gvermi8050.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24226 888141..888143 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8050.t1	Gvermi8050.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24226 887079..888143 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24226:887079..888143+
coding sequence from alignment at ScGOVlb_24226:887079..888143+

mRNA sequence

>Gvermi8050.t1 ID=Gvermi8050.t1|Name=Gvermi8050.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=355bp
MVVPSFAPSVSLHPPHRVARKPRARRAAAAPPVAVAQRRVTPPPPSATPS
PSAFSPSLLREYLVTNKMRVDHELEACLQLTDSRTETLVHAMRYSLLAGG
KRIRPILAIAAFQMFAGPHADLAPVMPAALAVEMIHTMSLIHDDLPSMDN
DDFRRGKPTNHKVYGEDIAILAGDALLSYAFEYVARHTRSVDPARVVEVL
ALLTNSVGPHGLAGGQVMDIKSEGQSDISIDTLTWIHTHKTAALLRVSCA
CGAILGGATSDDVRRVSEFAVKTGLAFQIADDVLDITQSTEVLGKTAGKD
LATDKATYPRLLGLEGSKQQAQTLVQQAKACLAPYGERAHTLFALADFII
SRNN*

spliced messenger RNA

>Gvermi8050.t1 ID=Gvermi8050.t1|Name=Gvermi8050.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1065bp|location=Sequence derived from alignment at ScGOVlb_24226:887079..888143+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
atggtcgtgccctccttcgcaccctctgtctctctccacccgccgcatcg
cgtcgcgcgcaagccgcgtgcgcgccgcgccgccgccgcgccgcctgtgg
ccgtcgcgcagcgccgcgtcacgccgccgccgccgtccgccaccccgtcg
ccaagcgcgttctcgccgtcgctgctgcgcgagtatcttgtcaccaacaa
gatgcgcgtcgatcatgagctggaggcctgtctgcagctcaccgactccc
gcaccgagacgctggtgcacgccatgcgctactccctgctggccggcggc
aagcgcatccgcccaattctcgccatcgccgccttccagatgtttgctgg
cccgcacgccgacctggcccccgtcatgcctgctgcgcttgccgtcgAAA
TGATCCACACCATGAGCCTCATCCACGACGACCTGCCCAGCATGGACAAC
GACGATTTTCGTCGCGGTAAGCCCACCAACCACAAAGTGTACGGCGAGGA
CATTGCCATTTTGGCAGGCGATGCGCTTCTTTCCTACGCCTTTGAGTACG
TTGCGCGCCACACGCGCTCGGTCGACCCGGCCCGTGTCGTAGAGGTGCTT
GCCCTGCTCACCAATAGCGTTGGACCGCATGGTCTGGCTGGCGGACAGGT
CATGGACATCAAGTCCGAGGGCCAATCCGATATTTCCATCGACACTCTCA
CCTGGATTCATACCCATAAGACTGCCGCTCTGCTGCGCGTCAGCTGCGCA
TGCGGCGCCATTTTGGGCGGTGCCACCAGTGATGACGTTCGTCGAGTCAG
CGAGTTCGCCGTGAAAACCGGACTTGCATTCCAGATTGCCGACGATGTGC
TGGACATCACGCAGAGCACCGAGGTGCTGGGCAAGACAGCCGGCAAGGAC
CTCGCTACTGACAAGGCCACCTATCCAAGGCTGTTGGGTTTGGAAGGATC
CAAGCAGCAAGCGCAAACACTCGTCCAACAGGCAAAAGCATGTCTCGCCC
CCTATGGCGAACGTGCCCATACGCTCTTTGCGCTTGCCGATTTCATCATA
TCTCGCAATAACTAG

protein sequence of Gvermi8050.t1

>Gvermi8050.t1 ID=Gvermi8050.t1|Name=Gvermi8050.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=355bp
MVVPSFAPSVSLHPPHRVARKPRARRAAAAPPVAVAQRRVTPPPPSATPS
PSAFSPSLLREYLVTNKMRVDHELEACLQLTDSRTETLVHAMRYSLLAGG
KRIRPILAIAAFQMFAGPHADLAPVMPAALAVEMIHTMSLIHDDLPSMDN
DDFRRGKPTNHKVYGEDIAILAGDALLSYAFEYVARHTRSVDPARVVEVL
ALLTNSVGPHGLAGGQVMDIKSEGQSDISIDTLTWIHTHKTAALLRVSCA
CGAILGGATSDDVRRVSEFAVKTGLAFQIADDVLDITQSTEVLGKTAGKD
LATDKATYPRLLGLEGSKQQAQTLVQQAKACLAPYGERAHTLFALADFII
SRNN*

mRNA from alignment at ScGOVlb_24226:887079..888143+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi8050.t1 ID=Gvermi8050.t1|Name=Gvermi8050.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1065bp|location=Sequence derived from alignment at ScGOVlb_24226:887079..888143+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atggtcgtgccctccttcgcaccctctgtctctctccacccgccgcatcg
cgtcgcgcgcaagccgcgtgcgcgccgcgccgccgccgcgccgcctgtgg
ccgtcgcgcagcgccgcgtcacgccgccgccgccgtccgccaccccgtcg
ccaagcgcgttctcgccgtcgctgctgcgcgagtatcttgtcaccaacaa
gatgcgcgtcgatcatgagctggaggcctgtctgcagctcaccgactccc
gcaccgagacgctggtgcacgccatgcgctactccctgctggccggcggc
aagcgcatccgcccaattctcgccatcgccgccttccagatgtttgctgg
cccgcacgccgacctggcccccgtcatgcctgctgcgcttgccgtcgAAA
TGATCCACACCATGAGCCTCATCCACGACGACCTGCCCAGCATGGACAAC
GACGATTTTCGTCGCGGTAAGCCCACCAACCACAAAGTGTACGGCGAGGA
CATTGCCATTTTGGCAGGCGATGCGCTTCTTTCCTACGCCTTTGAGTACG
TTGCGCGCCACACGCGCTCGGTCGACCCGGCCCGTGTCGTAGAGGTGCTT
GCCCTGCTCACCAATAGCGTTGGACCGCATGGTCTGGCTGGCGGACAGGT
CATGGACATCAAGTCCGAGGGCCAATCCGATATTTCCATCGACACTCTCA
CCTGGATTCATACCCATAAGACTGCCGCTCTGCTGCGCGTCAGCTGCGCA
TGCGGCGCCATTTTGGGCGGTGCCACCAGTGATGACGTTCGTCGAGTCAG
CGAGTTCGCCGTGAAAACCGGACTTGCATTCCAGATTGCCGACGATGTGC
TGGACATCACGCAGAGCACCGAGGTGCTGGGCAAGACAGCCGGCAAGGAC
CTCGCTACTGACAAGGCCACCTATCCAAGGCTGTTGGGTTTGGAAGGATC
CAAGCAGCAAGCGCAAACACTCGTCCAACAGGCAAAAGCATGTCTCGCCC
CCTATGGCGAACGTGCCCATACGCTCTTTGCGCTTGCCGATTTCATCATA
TCTCGCAATAACTAG

Coding sequence (CDS) from alignment at ScGOVlb_24226:887079..888143+

>Gvermi8050.t1 ID=Gvermi8050.t1|Name=Gvermi8050.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1065bp|location=Sequence derived from alignment at ScGOVlb_24226:887079..888143+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atggtcgtgccctccttcgcaccctctgtctctctccacccgccgcatcg
cgtcgcgcgcaagccgcgtgcgcgccgcgccgccgccgcgccgcctgtgg
ccgtcgcgcagcgccgcgtcacgccgccgccgccgtccgccaccccgtcg
ccaagcgcgttctcgccgtcgctgctgcgcgagtatcttgtcaccaacaa
gatgcgcgtcgatcatgagctggaggcctgtctgcagctcaccgactccc
gcaccgagacgctggtgcacgccatgcgctactccctgctggccggcggc
aagcgcatccgcccaattctcgccatcgccgccttccagatgtttgctgg
cccgcacgccgacctggcccccgtcatgcctgctgcgcttgccgtcgAAA
TGATCCACACCATGAGCCTCATCCACGACGACCTGCCCAGCATGGACAAC
GACGATTTTCGTCGCGGTAAGCCCACCAACCACAAAGTGTACGGCGAGGA
CATTGCCATTTTGGCAGGCGATGCGCTTCTTTCCTACGCCTTTGAGTACG
TTGCGCGCCACACGCGCTCGGTCGACCCGGCCCGTGTCGTAGAGGTGCTT
GCCCTGCTCACCAATAGCGTTGGACCGCATGGTCTGGCTGGCGGACAGGT
CATGGACATCAAGTCCGAGGGCCAATCCGATATTTCCATCGACACTCTCA
CCTGGATTCATACCCATAAGACTGCCGCTCTGCTGCGCGTCAGCTGCGCA
TGCGGCGCCATTTTGGGCGGTGCCACCAGTGATGACGTTCGTCGAGTCAG
CGAGTTCGCCGTGAAAACCGGACTTGCATTCCAGATTGCCGACGATGTGC
TGGACATCACGCAGAGCACCGAGGTGCTGGGCAAGACAGCCGGCAAGGAC
CTCGCTACTGACAAGGCCACCTATCCAAGGCTGTTGGGTTTGGAAGGATC
CAAGCAGCAAGCGCAAACACTCGTCCAACAGGCAAAAGCATGTCTCGCCC
CCTATGGCGAACGTGCCCATACGCTCTTTGCGCTTGCCGATTTCATCATA
TCTCGCAATAACTAG