Gvermi8045.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8045.t1
Unique NameGvermi8045.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length324
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:856981..857952 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1027273.GZ77_23800
PFAMsMetallophos,RicinB_lectin_2
Max annot lvl1236|Gammaproteobacteria
Evalue3.18e-71
EggNOG OGsCOG5555@1|root,COG5555@2|Bacteria,1NBMC@1224|Proteobacteria,1SECC@1236|Gammaproteobacteria
DescriptionCalcineurin-like phosphoesterase
COG categoryN
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8045Gvermi8045Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 856981..857952 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8045.t1.start1Gvermi8045.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 856981..856983 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8045.t1.CDS1Gvermi8045.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 856981..857952 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8045.t1.exon1Gvermi8045.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 856981..857952 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8045.t1.stop1Gvermi8045.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 857950..857952 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8045.t1Gvermi8045.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 856981..857952 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8045.t1 ID=Gvermi8045.t1|Name=Gvermi8045.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=324bp
MIISNDPQLIWWQDPPNAKKCDQEPSCKKRFAAREAQQQVQAMNSILDLQ
KWPGNGKRVRKPRGVIINGDLTQYFHPRELDLFEMYYNRYSNSPSEHVLR
FDVFLGLGNHDYANNLDDCFWYGVSNLEYIKYMRNGCAQRAVDYIKSMIS
CGSFPSFPSKMLESFDAGSLAYSWNMGFYHFIQLHNYPAFEAEQVNISDS
FKWLENDLWLAKSSGKRIIVNLHDLGDKFRTRERQQFIRLIEETNVVAIF
CGHVIGSNNLGFQGNLGSVPVFRGGHAGELNRNRFLLVDFAPTYLRVLVV
SSFEGRPKSEHKRGTKFDKTVHF*
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spliced messenger RNA

>Gvermi8045.t1 ID=Gvermi8045.t1|Name=Gvermi8045.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=972bp|location=Sequence derived from alignment at ScGOVlb_24226:856981..857952+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTATATCCAACGATCCTCAGCTAATCTGGTGGCAAGATCCACCTAA
TGCTAAAAAGTGTGATCAGGAACCATCTTGCAAAAAAAGATTTGCAGCTA
GAGAGGCTCAACAACAGGTTCAGGCTATGAATTCAATATTAGACCTGCAG
AAATGGCCTGGGAACGGAAAGAGAGTACGGAAACCTCGAGGAGTAATTAT
TAACGGTGATTTAACGCAATACTTTCATCCTCGGGAGCTTGATTTGTTTG
AGATGTACTATAACCGTTACAGCAACTCCCCGAGTGAACATGTACTAAGG
TTTGACGTATTTCTAGGACTCGGGAACCATGACTACGCCAACAATTTGGA
TGATTGCTTCTGGTATGGGGTTTCTAATTTAGAGTACATCAAATATATGC
GCAACGGCTGCGCTCAAAGAGCGGTGGACTACATCAAAAGCATGATCTCA
TGTGGGTCGTTTCCATCGTTCCCATCAAAAATGCTCGAAAGCTTTGATGC
TGGAAGTCTAGCCTATTCGTGGAATATGGGTTTTTATCACTTTATCCAGC
TGCACAACTATCCCGCATTTGAAGCTGAGCAAGTCAACATATCCGATTCT
TTCAAGTGGCTCGAGAATGACCTGTGGCTAGCCAAATCCTCTGGAAAGCG
GATCATAGTGAATCTCCATGATCTTGGTGACAAGTTTAGAACACGCGAAC
GCCAGCAGTTCATCAGACTTATAGAGGAAACTAACGTCGTTGCTATATTT
TGCGGACATGTTATTGGTAGTAATAATCTTGGATTTCAAGGAAACTTAGG
ATCCGTACCAGTTTTCCGCGGAGGACACGCTGGAGAATTGAACCGCAATA
GATTTTTGCTCGTAGACTTCGCTCCGACCTATTTAAGAGTTCTCGTTGTT
TCGAGCTTTGAGGGCAGACCGAAAAGTGAGCACAAACGAGGCACCAAATT
TGACAAAACTGTTCATTTTTAA
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protein sequence of Gvermi8045.t1

>Gvermi8045.t1 ID=Gvermi8045.t1|Name=Gvermi8045.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=324bp
MIISNDPQLIWWQDPPNAKKCDQEPSCKKRFAAREAQQQVQAMNSILDLQ
KWPGNGKRVRKPRGVIINGDLTQYFHPRELDLFEMYYNRYSNSPSEHVLR
FDVFLGLGNHDYANNLDDCFWYGVSNLEYIKYMRNGCAQRAVDYIKSMIS
CGSFPSFPSKMLESFDAGSLAYSWNMGFYHFIQLHNYPAFEAEQVNISDS
FKWLENDLWLAKSSGKRIIVNLHDLGDKFRTRERQQFIRLIEETNVVAIF
CGHVIGSNNLGFQGNLGSVPVFRGGHAGELNRNRFLLVDFAPTYLRVLVV
SSFEGRPKSEHKRGTKFDKTVHF*
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mRNA from alignment at ScGOVlb_24226:856981..857952+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8045.t1 ID=Gvermi8045.t1|Name=Gvermi8045.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=972bp|location=Sequence derived from alignment at ScGOVlb_24226:856981..857952+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATTATATCCAACGATCCTCAGCTAATCTGGTGGCAAGATCCACCTAA
TGCTAAAAAGTGTGATCAGGAACCATCTTGCAAAAAAAGATTTGCAGCTA
GAGAGGCTCAACAACAGGTTCAGGCTATGAATTCAATATTAGACCTGCAG
AAATGGCCTGGGAACGGAAAGAGAGTACGGAAACCTCGAGGAGTAATTAT
TAACGGTGATTTAACGCAATACTTTCATCCTCGGGAGCTTGATTTGTTTG
AGATGTACTATAACCGTTACAGCAACTCCCCGAGTGAACATGTACTAAGG
TTTGACGTATTTCTAGGACTCGGGAACCATGACTACGCCAACAATTTGGA
TGATTGCTTCTGGTATGGGGTTTCTAATTTAGAGTACATCAAATATATGC
GCAACGGCTGCGCTCAAAGAGCGGTGGACTACATCAAAAGCATGATCTCA
TGTGGGTCGTTTCCATCGTTCCCATCAAAAATGCTCGAAAGCTTTGATGC
TGGAAGTCTAGCCTATTCGTGGAATATGGGTTTTTATCACTTTATCCAGC
TGCACAACTATCCCGCATTTGAAGCTGAGCAAGTCAACATATCCGATTCT
TTCAAGTGGCTCGAGAATGACCTGTGGCTAGCCAAATCCTCTGGAAAGCG
GATCATAGTGAATCTCCATGATCTTGGTGACAAGTTTAGAACACGCGAAC
GCCAGCAGTTCATCAGACTTATAGAGGAAACTAACGTCGTTGCTATATTT
TGCGGACATGTTATTGGTAGTAATAATCTTGGATTTCAAGGAAACTTAGG
ATCCGTACCAGTTTTCCGCGGAGGACACGCTGGAGAATTGAACCGCAATA
GATTTTTGCTCGTAGACTTCGCTCCGACCTATTTAAGAGTTCTCGTTGTT
TCGAGCTTTGAGGGCAGACCGAAAAGTGAGCACAAACGAGGCACCAAATT
TGACAAAACTGTTCATTTTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:856981..857952+

>Gvermi8045.t1 ID=Gvermi8045.t1|Name=Gvermi8045.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=972bp|location=Sequence derived from alignment at ScGOVlb_24226:856981..857952+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATTATATCCAACGATCCTCAGCTAATCTGGTGGCAAGATCCACCTAA
TGCTAAAAAGTGTGATCAGGAACCATCTTGCAAAAAAAGATTTGCAGCTA
GAGAGGCTCAACAACAGGTTCAGGCTATGAATTCAATATTAGACCTGCAG
AAATGGCCTGGGAACGGAAAGAGAGTACGGAAACCTCGAGGAGTAATTAT
TAACGGTGATTTAACGCAATACTTTCATCCTCGGGAGCTTGATTTGTTTG
AGATGTACTATAACCGTTACAGCAACTCCCCGAGTGAACATGTACTAAGG
TTTGACGTATTTCTAGGACTCGGGAACCATGACTACGCCAACAATTTGGA
TGATTGCTTCTGGTATGGGGTTTCTAATTTAGAGTACATCAAATATATGC
GCAACGGCTGCGCTCAAAGAGCGGTGGACTACATCAAAAGCATGATCTCA
TGTGGGTCGTTTCCATCGTTCCCATCAAAAATGCTCGAAAGCTTTGATGC
TGGAAGTCTAGCCTATTCGTGGAATATGGGTTTTTATCACTTTATCCAGC
TGCACAACTATCCCGCATTTGAAGCTGAGCAAGTCAACATATCCGATTCT
TTCAAGTGGCTCGAGAATGACCTGTGGCTAGCCAAATCCTCTGGAAAGCG
GATCATAGTGAATCTCCATGATCTTGGTGACAAGTTTAGAACACGCGAAC
GCCAGCAGTTCATCAGACTTATAGAGGAAACTAACGTCGTTGCTATATTT
TGCGGACATGTTATTGGTAGTAATAATCTTGGATTTCAAGGAAACTTAGG
ATCCGTACCAGTTTTCCGCGGAGGACACGCTGGAGAATTGAACCGCAATA
GATTTTTGCTCGTAGACTTCGCTCCGACCTATTTAAGAGTTCTCGTTGTT
TCGAGCTTTGAGGGCAGACCGAAAAGTGAGCACAAACGAGGCACCAAATT
TGACAAAACTGTTCATTTTTAA
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