Gvermi8044.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8044.t1
Unique NameGvermi8044.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length173
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:797077..797595 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706567.1
PFAMsEF-hand_1,EF-hand_5,EF-hand_6,EF-hand_7
Max annot lvl2759|Eukaryota
KEGG rclassRC00007
KEGG koko:K05907,ko:K06268,ko:K17610
KEGG ReactionR05717
KEGG Pathwayko00920,ko01120,ko04010,ko04020,ko04022,ko04114,ko04218,ko04310,ko04360,ko04370,ko04380,ko04650,ko04658,ko04659,ko04660,ko04662,ko04720,ko04724,ko04921,ko04922,ko04924,ko05010,ko05014,ko05031,ko05152,ko05166,ko05167,map00920,map01120,map04010,map04020,map04022,map04114,map04218,map04310,map04360,map04370,map04380,map04650,map04658,map04659,map04660,map04662,map04720,map04724,map04921,map04922,map04924,map05010,map05014,map05031,map05152,map05166,map05167
GOsGO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:1901564
Evalue3.9e-49
EggNOG OGsCOG5126@1|root,KOG0034@2759|Eukaryota
EC1.8.4.9
Descriptioncalcium ion binding
COG categoryDTZ
BRITEko00000,ko00001,ko01000,ko01009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8044Gvermi8044Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 797077..797595 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8044.t1.stop1Gvermi8044.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 797077..797079 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8044.t1.CDS1Gvermi8044.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 797077..797595 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8044.t1.exon1Gvermi8044.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 797077..797595 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8044.t1.start1Gvermi8044.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 797593..797595 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8044.t1Gvermi8044.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 797077..797595 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8044.t1 ID=Gvermi8044.t1|Name=Gvermi8044.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=173bp
MGANTSALLSDEINEICRHTTLRQHQVKRLYKRFQRLDRAQSGSLDAAAL
LMVPELAMNPLHPRLLAMLQGANFRQFAALMAAFSASADPARKLDFTFRV
YDVDGDGFISPHDLRHILALLVGAHVDRRTVAQLAANVIADADADGDGRI
SRREFDAAMHVRDLARTLSVAL*
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spliced messenger RNA

>Gvermi8044.t1 ID=Gvermi8044.t1|Name=Gvermi8044.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=519bp|location=Sequence derived from alignment at ScGOVlb_24226:797077..797595- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGCCAACACGTCGGCGCTGCTGTCCGACGAAATCAACGAGATCTG
CCGCCACACGACGCTGCGCCAGCACCAGGTGAAGCGGCTGTACAAGCGCT
TCCAGCGCCTCGACCGCGCGCAGTCCGGCTCGCTGGACGCCGCCGCGCTG
CTCATGGTGCCCGAGCTGGCCATGAACCCGCTGCACCCGCGCCTGCTGGC
CATGCTGCAGGGCGCCAACTTCCGCCAGTTCGCCGCGCTCATGGCCGCCT
TCAGCGCCTCCGCCGACCCCGCGCGCAAGCTCGACTTTACGTTCCGCGTG
TACGACGTCGACGGCGACGGCTTCATCTCGCCGCACGACCTGCGCCACAT
CCTGGCGCTGCTCGTGGGCGCGCACGTCGACCGCCGCACCGTGGCGCAGC
TCGCCGCCAACGTCATTGCCGACGCCGACGCCGACGGCGACGGCCGCATC
TCGCGCCGCGAGTTTGACGCCGCCATGCACGTGCGCGACCTGGCGCGCAC
CCTCTCCGTCGCCCTCTGA
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protein sequence of Gvermi8044.t1

>Gvermi8044.t1 ID=Gvermi8044.t1|Name=Gvermi8044.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=173bp
MGANTSALLSDEINEICRHTTLRQHQVKRLYKRFQRLDRAQSGSLDAAAL
LMVPELAMNPLHPRLLAMLQGANFRQFAALMAAFSASADPARKLDFTFRV
YDVDGDGFISPHDLRHILALLVGAHVDRRTVAQLAANVIADADADGDGRI
SRREFDAAMHVRDLARTLSVAL*
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mRNA from alignment at ScGOVlb_24226:797077..797595-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8044.t1 ID=Gvermi8044.t1|Name=Gvermi8044.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=519bp|location=Sequence derived from alignment at ScGOVlb_24226:797077..797595- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCGCCAACACGTCGGCGCTGCTGTCCGACGAAATCAACGAGATCTG
CCGCCACACGACGCTGCGCCAGCACCAGGTGAAGCGGCTGTACAAGCGCT
TCCAGCGCCTCGACCGCGCGCAGTCCGGCTCGCTGGACGCCGCCGCGCTG
CTCATGGTGCCCGAGCTGGCCATGAACCCGCTGCACCCGCGCCTGCTGGC
CATGCTGCAGGGCGCCAACTTCCGCCAGTTCGCCGCGCTCATGGCCGCCT
TCAGCGCCTCCGCCGACCCCGCGCGCAAGCTCGACTTTACGTTCCGCGTG
TACGACGTCGACGGCGACGGCTTCATCTCGCCGCACGACCTGCGCCACAT
CCTGGCGCTGCTCGTGGGCGCGCACGTCGACCGCCGCACCGTGGCGCAGC
TCGCCGCCAACGTCATTGCCGACGCCGACGCCGACGGCGACGGCCGCATC
TCGCGCCGCGAGTTTGACGCCGCCATGCACGTGCGCGACCTGGCGCGCAC
CCTCTCCGTCGCCCTCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:797077..797595-

>Gvermi8044.t1 ID=Gvermi8044.t1|Name=Gvermi8044.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=519bp|location=Sequence derived from alignment at ScGOVlb_24226:797077..797595- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCGCCAACACGTCGGCGCTGCTGTCCGACGAAATCAACGAGATCTG
CCGCCACACGACGCTGCGCCAGCACCAGGTGAAGCGGCTGTACAAGCGCT
TCCAGCGCCTCGACCGCGCGCAGTCCGGCTCGCTGGACGCCGCCGCGCTG
CTCATGGTGCCCGAGCTGGCCATGAACCCGCTGCACCCGCGCCTGCTGGC
CATGCTGCAGGGCGCCAACTTCCGCCAGTTCGCCGCGCTCATGGCCGCCT
TCAGCGCCTCCGCCGACCCCGCGCGCAAGCTCGACTTTACGTTCCGCGTG
TACGACGTCGACGGCGACGGCTTCATCTCGCCGCACGACCTGCGCCACAT
CCTGGCGCTGCTCGTGGGCGCGCACGTCGACCGCCGCACCGTGGCGCAGC
TCGCCGCCAACGTCATTGCCGACGCCGACGCCGACGGCGACGGCCGCATC
TCGCGCCGCGAGTTTGACGCCGCCATGCACGTGCGCGACCTGGCGCGCAC
CCTCTCCGTCGCCCTCTGA
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