Gvermi8042.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi8042.t1
Unique Name	Gvermi8042.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	552

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24226	contig	ScGOVlb_24226:790394..792049 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4577.GRMZM2G088088_P01
PFAMs	Arm,Arm_3,IBB
Max annot lvl	35493\|Streptophyta
GOs	GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005654,GO:0005737,GO:0005829,GO:0006606,GO:0006607,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008139,GO:0008150,GO:0008565,GO:0012505,GO:0015031,GO:0015833,GO:0017038,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034504,GO:0034613,GO:0042277,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0072594
Evalue	1.09e-131
EggNOG OGs	COG5064@1\|root,KOG0166@2759\|Eukaryota,37HJI@33090\|Viridiplantae,3GAGW@35493\|Streptophyta,3KURU@4447\|Liliopsida,3ICU0@38820\|Poales
Description	Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope
COG category	U

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi8042	Gvermi8042	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24226 790394..792049 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8042.t1.start1	Gvermi8042.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24226 790394..790396 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8042.t1.CDS1	Gvermi8042.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24226 790394..792049 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8042.t1.exon1	Gvermi8042.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24226 790394..792049 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8042.t1.stop1	Gvermi8042.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24226 792047..792049 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8042.t1	Gvermi8042.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24226 790394..792049 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24226:790394..792049+
coding sequence from alignment at ScGOVlb_24226:790394..792049+

mRNA sequence

>Gvermi8042.t1 ID=Gvermi8042.t1|Name=Gvermi8042.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=552bp
MSDRVTKQDLRKGRFKKSIDRDEARRQREDNLVGIRKSKREESLMKKRRE
RMSVNSTFANTADVDTTCVTDSNAPLAPLQYTQRLPAMVAGVFSDDPNQQ
IQATLDFRRVLSIEKNPPIAEVIAQNVVPRFVQFLNHDQNPQLQFEAAWS
LTNIASGTSAHTKVVIDSGAIPIFVYLLNSRYDDVREQAVWALGNIAGDS
AACRDLVLEAGALHPLLVQLSGDSKVTMLRNATWTLSNFCRGKPPPDFEM
VRPALATLSHVLYYADEEVLTDACWALSYLSDGSNDKISAVVESGVVKRL
VELLLHQSVSVQTPALRTIGNIVTGDDMQTQFVINSSALPCLLNLLNSAK
KSIRKEACWTISNITAGNKDQIQAVMDANIIPPLVHTLSHADFDIKKEAA
WAVSNATSGGTSQQIKFLVGNGAIEPLCNLLTVHDVRIVGVALEGLENIL
RVGQKEKETSGAELNEYAQNIESVGGLDKIEALQQHSNQEVYEKAVRILE
VFFMAEEEEEIEGVVPDNTGSQFGFGGQEQAPEGGFNFGNPSAFGGPGWG
Q*

spliced messenger RNA

>Gvermi8042.t1 ID=Gvermi8042.t1|Name=Gvermi8042.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1656bp|location=Sequence derived from alignment at ScGOVlb_24226:790394..792049+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGACCGCGTTACCAAACAGGACCTGCGGAAGGGCCGTTTCAAGAA
GTCTATCGATCGCGATGAAGCCCGTCGCCAGCGCGAGGACAACCTTGTCG
GCATCCGCAAGTCAAAGCGCGAGGAGAGCCTCATGAAAAAGCGTCGCGAA
CGCATGAGCGTTAACTCCACCTTTGCCAACACCGCCGACGTCGACACCAC
GTGTGTCACCGACTCCAATGCTCCGCTGGCGCCTCTGCAATACACCCAGC
GCTTACCGGCCATGGTTGCCGGCGTGTTCTCCGACGACCCCAACCAGCAG
ATTCAGGCCACCCTCGACTTTCGTCGCGTGCTGTCGATTGAGAAGAACCC
CCCCATTGCGGAGGTTATAGCCCAGAATGTCGTTCCTCGCTTTGTGCAGT
TTTTGAATCACGATCAAAACCCCCAACTGCAGTTTGAGGCCGCGTGGTCG
CTCACCAACATTGCCTCGGGCACCTCTGCCCACACCAAGGTTGTCATTGA
CAGTGGAGCCATTCCCATCTTTGTGTACTTGCTCAACTCGCGCTATGATG
ATGTTCGTGAGCAGGCCGTGTGGGCCCTCGGCAACATTGCCGGCGACTCG
GCCGCTTGCCGCGATCTCGTGCTTGAGGCGGGTGCCTTGCACCCCCTTCT
TGTGCAGCTGTCGGGCGATTCCAAGGTCACCATGCTGAGGAACGCTACTT
GGACCCTTTCCAACTTTTGCCGTGGCAAGCCGCCACCAGACTTTGAGATG
GTGCGACCTGCCCTCGCCACTCTGTCTCATGTGCTTTACTATGCGGATGA
GGAGGTGCTCACCGATGCCTGTTGGGCACTTTCGTACTTGTCGGATGGAA
GCAATGACAAGATAAGCGCCGTTGTGGAAAGCGGTGTCGTCAAGCGCCTG
GTCGAGCTTTTGCTCCATCAGAGCGTCTCGGTTCAGACGCCGGCGCTCCG
AACCATTGGTAACATTGTCACTGGCGATGACATGCAGACTCAGTTTGTCA
TCAACAGCTCTGCACTTCCGTGTTTGCTCAACCTGCTCAATTCGGCAAAG
AAGTCTATTCGCAAGGAGGCGTGTTGGACCATATCCAATATCACCGCCGG
AAATAAGGACCAGATTCAGGCCGTCATGGACGCAAACATCATCCCGCCTC
TGGTGCACACGTTGTCGCATGCGGACTTTGACATTAAAAAGGAGGCTGCA
TGGGCCGTTTCGAATGCCACCTCTGGTGGCACCTCACAACAAATCAAGTT
CCTTGTGGGCAACGGAGCTATCGAGCCTCTATGCAACTTGCTCACTGTTC
ACGATGTCCGAATTGTGGGTGTTGCGCTGGAGGGCCTGGAGAATATTCTG
CGCGTCGGCCAGAAGGAGAAGGAGACTTCTGGAGCTGAACTGAATGAATA
TGCCCAAAACATTGAATCTGTTGGGGGCCTGGACAAAATTGAAGCTTTGC
AACAGCACTCCAACCAAGAAGTATACGAAAAAGCGGTTAGGATTTTGGAA
GTGTTTTTCATGGCCGAGGAAGAAGAAGAAATCGAAGGCGTTGTGCCAGA
CAACACTGGATCGCAGTTTGGATTTGGCGGTCAAGAGCAAGCTCCAGAGG
GTGGGTTCAACTTTGGAAACCCGTCTGCGTTTGGTGGCCCTGGTTGGGGC
CAATAG

protein sequence of Gvermi8042.t1

>Gvermi8042.t1 ID=Gvermi8042.t1|Name=Gvermi8042.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=552bp
MSDRVTKQDLRKGRFKKSIDRDEARRQREDNLVGIRKSKREESLMKKRRE
RMSVNSTFANTADVDTTCVTDSNAPLAPLQYTQRLPAMVAGVFSDDPNQQ
IQATLDFRRVLSIEKNPPIAEVIAQNVVPRFVQFLNHDQNPQLQFEAAWS
LTNIASGTSAHTKVVIDSGAIPIFVYLLNSRYDDVREQAVWALGNIAGDS
AACRDLVLEAGALHPLLVQLSGDSKVTMLRNATWTLSNFCRGKPPPDFEM
VRPALATLSHVLYYADEEVLTDACWALSYLSDGSNDKISAVVESGVVKRL
VELLLHQSVSVQTPALRTIGNIVTGDDMQTQFVINSSALPCLLNLLNSAK
KSIRKEACWTISNITAGNKDQIQAVMDANIIPPLVHTLSHADFDIKKEAA
WAVSNATSGGTSQQIKFLVGNGAIEPLCNLLTVHDVRIVGVALEGLENIL
RVGQKEKETSGAELNEYAQNIESVGGLDKIEALQQHSNQEVYEKAVRILE
VFFMAEEEEEIEGVVPDNTGSQFGFGGQEQAPEGGFNFGNPSAFGGPGWG
Q*

mRNA from alignment at ScGOVlb_24226:790394..792049+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi8042.t1 ID=Gvermi8042.t1|Name=Gvermi8042.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1656bp|location=Sequence derived from alignment at ScGOVlb_24226:790394..792049+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTGACCGCGTTACCAAACAGGACCTGCGGAAGGGCCGTTTCAAGAA
GTCTATCGATCGCGATGAAGCCCGTCGCCAGCGCGAGGACAACCTTGTCG
GCATCCGCAAGTCAAAGCGCGAGGAGAGCCTCATGAAAAAGCGTCGCGAA
CGCATGAGCGTTAACTCCACCTTTGCCAACACCGCCGACGTCGACACCAC
GTGTGTCACCGACTCCAATGCTCCGCTGGCGCCTCTGCAATACACCCAGC
GCTTACCGGCCATGGTTGCCGGCGTGTTCTCCGACGACCCCAACCAGCAG
ATTCAGGCCACCCTCGACTTTCGTCGCGTGCTGTCGATTGAGAAGAACCC
CCCCATTGCGGAGGTTATAGCCCAGAATGTCGTTCCTCGCTTTGTGCAGT
TTTTGAATCACGATCAAAACCCCCAACTGCAGTTTGAGGCCGCGTGGTCG
CTCACCAACATTGCCTCGGGCACCTCTGCCCACACCAAGGTTGTCATTGA
CAGTGGAGCCATTCCCATCTTTGTGTACTTGCTCAACTCGCGCTATGATG
ATGTTCGTGAGCAGGCCGTGTGGGCCCTCGGCAACATTGCCGGCGACTCG
GCCGCTTGCCGCGATCTCGTGCTTGAGGCGGGTGCCTTGCACCCCCTTCT
TGTGCAGCTGTCGGGCGATTCCAAGGTCACCATGCTGAGGAACGCTACTT
GGACCCTTTCCAACTTTTGCCGTGGCAAGCCGCCACCAGACTTTGAGATG
GTGCGACCTGCCCTCGCCACTCTGTCTCATGTGCTTTACTATGCGGATGA
GGAGGTGCTCACCGATGCCTGTTGGGCACTTTCGTACTTGTCGGATGGAA
GCAATGACAAGATAAGCGCCGTTGTGGAAAGCGGTGTCGTCAAGCGCCTG
GTCGAGCTTTTGCTCCATCAGAGCGTCTCGGTTCAGACGCCGGCGCTCCG
AACCATTGGTAACATTGTCACTGGCGATGACATGCAGACTCAGTTTGTCA
TCAACAGCTCTGCACTTCCGTGTTTGCTCAACCTGCTCAATTCGGCAAAG
AAGTCTATTCGCAAGGAGGCGTGTTGGACCATATCCAATATCACCGCCGG
AAATAAGGACCAGATTCAGGCCGTCATGGACGCAAACATCATCCCGCCTC
TGGTGCACACGTTGTCGCATGCGGACTTTGACATTAAAAAGGAGGCTGCA
TGGGCCGTTTCGAATGCCACCTCTGGTGGCACCTCACAACAAATCAAGTT
CCTTGTGGGCAACGGAGCTATCGAGCCTCTATGCAACTTGCTCACTGTTC
ACGATGTCCGAATTGTGGGTGTTGCGCTGGAGGGCCTGGAGAATATTCTG
CGCGTCGGCCAGAAGGAGAAGGAGACTTCTGGAGCTGAACTGAATGAATA
TGCCCAAAACATTGAATCTGTTGGGGGCCTGGACAAAATTGAAGCTTTGC
AACAGCACTCCAACCAAGAAGTATACGAAAAAGCGGTTAGGATTTTGGAA
GTGTTTTTCATGGCCGAGGAAGAAGAAGAAATCGAAGGCGTTGTGCCAGA
CAACACTGGATCGCAGTTTGGATTTGGCGGTCAAGAGCAAGCTCCAGAGG
GTGGGTTCAACTTTGGAAACCCGTCTGCGTTTGGTGGCCCTGGTTGGGGC
CAATAG

Coding sequence (CDS) from alignment at ScGOVlb_24226:790394..792049+

>Gvermi8042.t1 ID=Gvermi8042.t1|Name=Gvermi8042.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1656bp|location=Sequence derived from alignment at ScGOVlb_24226:790394..792049+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTGACCGCGTTACCAAACAGGACCTGCGGAAGGGCCGTTTCAAGAA
GTCTATCGATCGCGATGAAGCCCGTCGCCAGCGCGAGGACAACCTTGTCG
GCATCCGCAAGTCAAAGCGCGAGGAGAGCCTCATGAAAAAGCGTCGCGAA
CGCATGAGCGTTAACTCCACCTTTGCCAACACCGCCGACGTCGACACCAC
GTGTGTCACCGACTCCAATGCTCCGCTGGCGCCTCTGCAATACACCCAGC
GCTTACCGGCCATGGTTGCCGGCGTGTTCTCCGACGACCCCAACCAGCAG
ATTCAGGCCACCCTCGACTTTCGTCGCGTGCTGTCGATTGAGAAGAACCC
CCCCATTGCGGAGGTTATAGCCCAGAATGTCGTTCCTCGCTTTGTGCAGT
TTTTGAATCACGATCAAAACCCCCAACTGCAGTTTGAGGCCGCGTGGTCG
CTCACCAACATTGCCTCGGGCACCTCTGCCCACACCAAGGTTGTCATTGA
CAGTGGAGCCATTCCCATCTTTGTGTACTTGCTCAACTCGCGCTATGATG
ATGTTCGTGAGCAGGCCGTGTGGGCCCTCGGCAACATTGCCGGCGACTCG
GCCGCTTGCCGCGATCTCGTGCTTGAGGCGGGTGCCTTGCACCCCCTTCT
TGTGCAGCTGTCGGGCGATTCCAAGGTCACCATGCTGAGGAACGCTACTT
GGACCCTTTCCAACTTTTGCCGTGGCAAGCCGCCACCAGACTTTGAGATG
GTGCGACCTGCCCTCGCCACTCTGTCTCATGTGCTTTACTATGCGGATGA
GGAGGTGCTCACCGATGCCTGTTGGGCACTTTCGTACTTGTCGGATGGAA
GCAATGACAAGATAAGCGCCGTTGTGGAAAGCGGTGTCGTCAAGCGCCTG
GTCGAGCTTTTGCTCCATCAGAGCGTCTCGGTTCAGACGCCGGCGCTCCG
AACCATTGGTAACATTGTCACTGGCGATGACATGCAGACTCAGTTTGTCA
TCAACAGCTCTGCACTTCCGTGTTTGCTCAACCTGCTCAATTCGGCAAAG
AAGTCTATTCGCAAGGAGGCGTGTTGGACCATATCCAATATCACCGCCGG
AAATAAGGACCAGATTCAGGCCGTCATGGACGCAAACATCATCCCGCCTC
TGGTGCACACGTTGTCGCATGCGGACTTTGACATTAAAAAGGAGGCTGCA
TGGGCCGTTTCGAATGCCACCTCTGGTGGCACCTCACAACAAATCAAGTT
CCTTGTGGGCAACGGAGCTATCGAGCCTCTATGCAACTTGCTCACTGTTC
ACGATGTCCGAATTGTGGGTGTTGCGCTGGAGGGCCTGGAGAATATTCTG
CGCGTCGGCCAGAAGGAGAAGGAGACTTCTGGAGCTGAACTGAATGAATA
TGCCCAAAACATTGAATCTGTTGGGGGCCTGGACAAAATTGAAGCTTTGC
AACAGCACTCCAACCAAGAAGTATACGAAAAAGCGGTTAGGATTTTGGAA
GTGTTTTTCATGGCCGAGGAAGAAGAAGAAATCGAAGGCGTTGTGCCAGA
CAACACTGGATCGCAGTTTGGATTTGGCGGTCAAGAGCAAGCTCCAGAGG
GTGGGTTCAACTTTGGAAACCCGTCTGCGTTTGGTGGCCCTGGTTGGGGC
CAATAG