Gvermi8039.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8039.t1
Unique NameGvermi8039.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length364
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:782549..783640 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3712.Bo3g152620.1
PFAMsTPR_16,TPR_19
Max annot lvl35493|Streptophyta
KEGG koko:K20309
GOsGO:0000775,GO:0000776,GO:0003674,GO:0003824,GO:0004175,GO:0005085,GO:0005088,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005829,GO:0006508,GO:0006807,GO:0006810,GO:0006888,GO:0006996,GO:0007030,GO:0007049,GO:0007059,GO:0008150,GO:0008152,GO:0008233,GO:0009987,GO:0010256,GO:0016043,GO:0016192,GO:0016787,GO:0017016,GO:0017112,GO:0017137,GO:0019538,GO:0019899,GO:0022402,GO:0022607,GO:0030008,GO:0031267,GO:0032879,GO:0032880,GO:0032991,GO:0033043,GO:0033044,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044238,GO:0044422,GO:0044424,GO:0044427,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0048193,GO:0048518,GO:0050000,GO:0050789,GO:0050794,GO:0051020,GO:0051128,GO:0051179,GO:0051234,GO:0051259,GO:0051303,GO:0051310,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0060341,GO:0065003,GO:0065007,GO:0065009,GO:0070011,GO:0071704,GO:0071840,GO:0090230,GO:0090234,GO:0098687,GO:0098772,GO:0098813,GO:0099023,GO:0140096,GO:1901564,GO:1902115,GO:1903827,GO:1903829,GO:1905340,GO:1905342
Evalue7.44e-21
EggNOG OGsKOG2796@1|root,KOG2796@2759|Eukaryota,37KX5@33090|Viridiplantae,3GER8@35493|Streptophyta,3HN70@3699|Brassicales
DescriptionTrafficking protein particle complex subunit
COG categoryS
BRITEko00000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8039Gvermi8039Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 782549..783640 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8039.t1.stop1Gvermi8039.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 782549..782551 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8039.t1.CDS1Gvermi8039.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 782549..783640 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8039.t1.exon1Gvermi8039.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 782549..783640 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8039.t1.start1Gvermi8039.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 783638..783640 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8039.t1Gvermi8039.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 782549..783640 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8039.t1 ID=Gvermi8039.t1|Name=Gvermi8039.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=364bp
MPALRKHCSNFATRAVPRAAVLSAPSPSHMDSDIVHSDQQSDDSAPASTP
GHPLLRELHTLSANYQWVTVLQRASKLRAADDDGSINLLPHERLHLSAYK
ILALLQTRQLERATSEITSLESLTGENHQYRFETYPECYAGRTGTFVPFC
LHVVALEAAVRRGEVGAIDALHRSAASLSGTQRDVVLSLAAAAHARMGQM
DASVEVILQLVRQNPTVAALQALSRALLMSGDTESAANVLDEKQTADQIH
RALLHGTRGHYDKADAIYEAIVKEDDDRVAVKTAVSNRAVCLLQTARLDE
AVSQVEHAVDNGSHMLDEGVLFNLATLYELALADGASAKKAELSNMASRC
GRQGFDLQLLTSE*
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spliced messenger RNA

>Gvermi8039.t1 ID=Gvermi8039.t1|Name=Gvermi8039.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1092bp|location=Sequence derived from alignment at ScGOVlb_24226:782549..783640- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTGCCCTCCGCAAGCACTGTTCAAATTTCGCCACTCGCGCTGTGCC
GCGTGCTGCTGTGCTCAGCGCCCCCTCCCCGTCGCACATGGACTCCGACA
TCGTCCACTCCGACCAGCAGTCCGACGACTCAGCGCCAGCTTCAACCCCA
GGTCATCCTCTGTTGCGCGAGCTACACACGCTCAGTGCAAACTATCAATG
GGTCACCGTGCTGCAACGAGCGTCCAAGCTCCGCGCCGCAGACGATGATG
GTTCAATAAATCTTCTTCCACACGAGCGCCTCCACCTTTCGGCCTATAAA
ATCCTAGCCTTGCTGCAAACGAGGCAACTGGAACGAGCCACTTCTGAGAT
TACGTCGTTAGAAAGTCTCACCGGTGAAAACCACCAGTATCGCTTTGAAA
CGTACCCCGAATGTTACGCAGGTCGCACCGGAACCTTTGTCCCGTTCTGT
TTGCACGTTGTGGCTTTAGAGGCTGCCGTGCGACGCGGTGAGGTGGGCGC
CATTGACGCCTTGCACCGAAGTGCCGCTTCTCTTAGCGGCACGCAGCGCG
ACGTCGTTCTTTCGCTCGCCGCTGCCGCTCACGCCAGGATGGGGCAGATG
GACGCAAGCGTGGAAGTTATTTTACAGTTGGTGCGACAGAATCCTACTGT
TGCCGCTCTGCAGGCGCTTTCGCGCGCTTTGTTGATGAGTGGTGATACAG
AAAGCGCCGCAAATGTACTCGACGAGAAACAAACTGCCGATCAAATTCAT
CGTGCTTTACTACATGGCACGCGTGGACACTATGACAAGGCCGATGCAAT
TTACGAAGCCATTGTGAAGGAGGACGACGACAGGGTGGCTGTTAAAACCG
CAGTCAGCAACCGCGCCGTATGCCTGTTGCAGACCGCGAGACTGGATGAA
GCCGTTTCTCAAGTAGAGCATGCAGTCGATAATGGCTCTCACATGTTGGA
CGAGGGTGTGTTGTTCAATTTGGCCACCCTGTACGAGTTGGCGCTAGCTG
ACGGTGCTTCTGCCAAAAAAGCTGAGCTGTCGAACATGGCGTCCCGGTGT
GGGAGGCAAGGCTTTGATTTGCAACTTCTCACGTCTGAGTGA
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protein sequence of Gvermi8039.t1

>Gvermi8039.t1 ID=Gvermi8039.t1|Name=Gvermi8039.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=364bp
MPALRKHCSNFATRAVPRAAVLSAPSPSHMDSDIVHSDQQSDDSAPASTP
GHPLLRELHTLSANYQWVTVLQRASKLRAADDDGSINLLPHERLHLSAYK
ILALLQTRQLERATSEITSLESLTGENHQYRFETYPECYAGRTGTFVPFC
LHVVALEAAVRRGEVGAIDALHRSAASLSGTQRDVVLSLAAAAHARMGQM
DASVEVILQLVRQNPTVAALQALSRALLMSGDTESAANVLDEKQTADQIH
RALLHGTRGHYDKADAIYEAIVKEDDDRVAVKTAVSNRAVCLLQTARLDE
AVSQVEHAVDNGSHMLDEGVLFNLATLYELALADGASAKKAELSNMASRC
GRQGFDLQLLTSE*
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mRNA from alignment at ScGOVlb_24226:782549..783640-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8039.t1 ID=Gvermi8039.t1|Name=Gvermi8039.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1092bp|location=Sequence derived from alignment at ScGOVlb_24226:782549..783640- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTGCCCTCCGCAAGCACTGTTCAAATTTCGCCACTCGCGCTGTGCC
GCGTGCTGCTGTGCTCAGCGCCCCCTCCCCGTCGCACATGGACTCCGACA
TCGTCCACTCCGACCAGCAGTCCGACGACTCAGCGCCAGCTTCAACCCCA
GGTCATCCTCTGTTGCGCGAGCTACACACGCTCAGTGCAAACTATCAATG
GGTCACCGTGCTGCAACGAGCGTCCAAGCTCCGCGCCGCAGACGATGATG
GTTCAATAAATCTTCTTCCACACGAGCGCCTCCACCTTTCGGCCTATAAA
ATCCTAGCCTTGCTGCAAACGAGGCAACTGGAACGAGCCACTTCTGAGAT
TACGTCGTTAGAAAGTCTCACCGGTGAAAACCACCAGTATCGCTTTGAAA
CGTACCCCGAATGTTACGCAGGTCGCACCGGAACCTTTGTCCCGTTCTGT
TTGCACGTTGTGGCTTTAGAGGCTGCCGTGCGACGCGGTGAGGTGGGCGC
CATTGACGCCTTGCACCGAAGTGCCGCTTCTCTTAGCGGCACGCAGCGCG
ACGTCGTTCTTTCGCTCGCCGCTGCCGCTCACGCCAGGATGGGGCAGATG
GACGCAAGCGTGGAAGTTATTTTACAGTTGGTGCGACAGAATCCTACTGT
TGCCGCTCTGCAGGCGCTTTCGCGCGCTTTGTTGATGAGTGGTGATACAG
AAAGCGCCGCAAATGTACTCGACGAGAAACAAACTGCCGATCAAATTCAT
CGTGCTTTACTACATGGCACGCGTGGACACTATGACAAGGCCGATGCAAT
TTACGAAGCCATTGTGAAGGAGGACGACGACAGGGTGGCTGTTAAAACCG
CAGTCAGCAACCGCGCCGTATGCCTGTTGCAGACCGCGAGACTGGATGAA
GCCGTTTCTCAAGTAGAGCATGCAGTCGATAATGGCTCTCACATGTTGGA
CGAGGGTGTGTTGTTCAATTTGGCCACCCTGTACGAGTTGGCGCTAGCTG
ACGGTGCTTCTGCCAAAAAAGCTGAGCTGTCGAACATGGCGTCCCGGTGT
GGGAGGCAAGGCTTTGATTTGCAACTTCTCACGTCTGAGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:782549..783640-

>Gvermi8039.t1 ID=Gvermi8039.t1|Name=Gvermi8039.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1092bp|location=Sequence derived from alignment at ScGOVlb_24226:782549..783640- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTGCCCTCCGCAAGCACTGTTCAAATTTCGCCACTCGCGCTGTGCC
GCGTGCTGCTGTGCTCAGCGCCCCCTCCCCGTCGCACATGGACTCCGACA
TCGTCCACTCCGACCAGCAGTCCGACGACTCAGCGCCAGCTTCAACCCCA
GGTCATCCTCTGTTGCGCGAGCTACACACGCTCAGTGCAAACTATCAATG
GGTCACCGTGCTGCAACGAGCGTCCAAGCTCCGCGCCGCAGACGATGATG
GTTCAATAAATCTTCTTCCACACGAGCGCCTCCACCTTTCGGCCTATAAA
ATCCTAGCCTTGCTGCAAACGAGGCAACTGGAACGAGCCACTTCTGAGAT
TACGTCGTTAGAAAGTCTCACCGGTGAAAACCACCAGTATCGCTTTGAAA
CGTACCCCGAATGTTACGCAGGTCGCACCGGAACCTTTGTCCCGTTCTGT
TTGCACGTTGTGGCTTTAGAGGCTGCCGTGCGACGCGGTGAGGTGGGCGC
CATTGACGCCTTGCACCGAAGTGCCGCTTCTCTTAGCGGCACGCAGCGCG
ACGTCGTTCTTTCGCTCGCCGCTGCCGCTCACGCCAGGATGGGGCAGATG
GACGCAAGCGTGGAAGTTATTTTACAGTTGGTGCGACAGAATCCTACTGT
TGCCGCTCTGCAGGCGCTTTCGCGCGCTTTGTTGATGAGTGGTGATACAG
AAAGCGCCGCAAATGTACTCGACGAGAAACAAACTGCCGATCAAATTCAT
CGTGCTTTACTACATGGCACGCGTGGACACTATGACAAGGCCGATGCAAT
TTACGAAGCCATTGTGAAGGAGGACGACGACAGGGTGGCTGTTAAAACCG
CAGTCAGCAACCGCGCCGTATGCCTGTTGCAGACCGCGAGACTGGATGAA
GCCGTTTCTCAAGTAGAGCATGCAGTCGATAATGGCTCTCACATGTTGGA
CGAGGGTGTGTTGTTCAATTTGGCCACCCTGTACGAGTTGGCGCTAGCTG
ACGGTGCTTCTGCCAAAAAAGCTGAGCTGTCGAACATGGCGTCCCGGTGT
GGGAGGCAAGGCTTTGATTTGCAACTTCTCACGTCTGAGTGA
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