Gvermi8034.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi8034.t1
Unique Name	Gvermi8034.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	765

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24226	contig	ScGOVlb_24226:768907..771201 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	56107.Cylst_1337
PFAMs	Anth_synt_I_N,Chorismate_bind,GATase
Max annot lvl	1117\|Cyanobacteria
KEGG rclass	RC00010,RC01418
KEGG ko	ko:K13950
KEGG Reaction	R01716
KEGG Pathway	ko00790,map00790
Evalue	5.2e-188
EggNOG OGs	COG0147@1\|root,COG0512@1\|root,COG0147@2\|Bacteria,COG0512@2\|Bacteria,1G0RC@1117\|Cyanobacteria,1HJXZ@1161\|Nostocales
EC	2.6.1.85
Description	glutamine amidotransferase of anthranilate synthase
COG category	EH
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi8034	Gvermi8034	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24226 768907..771201 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8034.t1.start1	Gvermi8034.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24226 768907..768909 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8034.t1.CDS1	Gvermi8034.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24226 768907..771201 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8034.t1.exon1	Gvermi8034.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24226 768907..771201 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8034.t1.stop1	Gvermi8034.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24226 771199..771201 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8034.t1	Gvermi8034.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24226 768907..771201 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24226:768907..771201+
coding sequence from alignment at ScGOVlb_24226:768907..771201+

mRNA sequence

>Gvermi8034.t1 ID=Gvermi8034.t1|Name=Gvermi8034.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=765bp
MSLRLALIDNYDSYTFNLAHLIATANGNHPPQVFRSDAYSKLSQLHSEHG
QFDAFVLSPGPGTPVKHRDFSPLQREIVSGSTPTLAVCLGHQGLCHRYGA
AILHAPHGPKHGVISRVVKSNNECPLLRGTPNSFDVVRYHSLCVEPSSLP
SCLLPTLWTSDGGTDVLMGVRHATKPVFGLQFHPESVATQFGRQVASNFI
KLTAMYRKTQPIYPALKPSPEARPSCFRTLVRSTQLFVSPFALFKCLFGD
LKQSFWLDSSTNATPSSRCSSATPEEHCMGLVDAHPARYSIMGACHGPFS
ELVTYNVSKRITTVQKKKNRQTFHVSVFDYLQKVLKDRRTEHNPELPIEM
NGGYIGFFGYETKNDVDEAIENVHESCLPDAWFVFADRLLVVDHVLDRLY
FVALAREGHIEDYRDANNWFEDIRISMASLIDEKHVRDSRCQQTHNVQSP
LRFVPERSRSQYLADIGKCLGYINNGESYEVCLTNRLRTTLPPEFKSDPL
ELYSALRLVNPSPFSAFLRLDDDRAVCCSSPERYLQISSTGLVESKPIKG
TLPRGQTLEEDAKLRKQLQQSPKDRSENLMIVDLVRNDLSRMCEVGSVTV
PKLMCVESYATVHQLVSTVRGKLAPSRDAIDCVRAAYPMGSMTGAPKVRT
MEIIDRLESSARGIYSGSIGYLSVCGAVDLNVVIRTAVLNGSRVEIGVGG
AIVAMSNPQDEYEETILKGMPIMKALALNTTGVTDVVVVHEPQACDGVDR
TGEACETITTNNAT*

spliced messenger RNA

>Gvermi8034.t1 ID=Gvermi8034.t1|Name=Gvermi8034.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2295bp|location=Sequence derived from alignment at ScGOVlb_24226:768907..771201+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTTACGCCTGGCGCTTATCGACAACTATGATTCATATACATTCAA
CCTTGCTCACCTCATAGCAACCGCAAATGGCAATCACCCGCCACAAGTGT
TTCGCAGTGACGCGTACTCTAAACTCTCACAATTGCATTCAGAGCATGGA
CAATTCGATGCTTTCGTTCTCTCTCCAGGCCCTGGCACACCTGTGAAACA
TCGAGACTTTTCCCCTCTCCAGCGCGAGATTGTTTCAGGTAGCACCCCAA
CCTTGGCTGTATGTCTCGGACACCAGGGCCTCTGCCACAGATACGGTGCC
GCAATACTTCACGCACCGCACGGACCAAAACACGGCGTCATTTCTCGCGT
TGTCAAGAGCAATAACGAATGCCCGCTGCTGCGCGGCACTCCTAATTCAT
TTGATGTCGTTCGCTACCATAGCCTGTGCGTCGAACCGAGCTCGCTTCCT
TCGTGCCTCCTTCCAACACTTTGGACCAGTGATGGAGGCACGGACGTTCT
TATGGGCGTCAGACATGCCACCAAGCCAGTCTTTGGGCTTCAGTTCCACC
CAGAATCGGTAGCCACCCAGTTTGGACGCCAAGTAGCTAGCAACTTTATC
AAGTTAACTGCCATGTATCGGAAGACTCAACCCATCTATCCTGCCTTGAA
GCCATCACCAGAGGCCCGCCCATCATGCTTTCGAACGCTGGTACGAAGTA
CCCAGCTTTTTGTATCACCATTTGCGCTTTTCAAGTGCCTGTTTGGCGAT
TTGAAGCAGTCGTTTTGGCTGGATAGTAGTACAAATGCAACCCCTTCTTC
CCGATGCTCTTCTGCCACGCCCGAAGAACACTGTATGGGTCTTGTCGATG
CACATCCAGCTCGGTACTCAATCATGGGCGCTTGCCACGGGCCATTCTCG
GAACTTGTAACATATAATGTGTCCAAACGTATCACTACAGTTCAGAAAAA
GAAGAATAGGCAGACCTTTCATGTTTCAGTATTCGACTACTTGCAGAAAG
TTCTCAAAGATCGCCGCACGGAGCACAATCCCGAGCTCCCAATAGAAATG
AACGGCGGGTACATAGGGTTCTTTGGATATGAGACGAAAAATGACGTCGA
TGAAGCTATAGAGAATGTACATGAATCGTGTCTGCCAGACGCATGGTTTG
TATTTGCCGATCGCCTTCTCGTCGTGGACCATGTCCTTGACAGACTTTAT
TTTGTTGCTCTTGCGAGGGAAGGTCACATTGAGGACTACCGAGACGCAAA
CAATTGGTTCGAAGACATTCGAATATCTATGGCCTCTCTCATCGATGAAA
AGCACGTGCGCGACAGCCGGTGCCAACAAACGCACAACGTACAGTCGCCA
TTGCGTTTTGTGCCAGAACGCAGTCGAAGTCAGTACCTGGCAGACATTGG
GAAGTGCCTGGGATATATAAATAATGGAGAAAGTTACGAAGTTTGTCTCA
CCAATCGGTTGCGGACCACCCTGCCGCCTGAGTTCAAGTCAGATCCCCTG
GAACTGTATAGCGCCCTACGATTGGTAAACCCTTCACCGTTCTCGGCTTT
TCTGCGGCTTGACGATGACCGAGCCGTTTGCTGCAGTTCACCTGAGCGAT
ATCTACAAATCTCCTCCACTGGTCTCGTGGAATCGAAGCCAATCAAGGGA
ACGCTTCCACGAGGGCAAACTCTGGAAGAGGACGCTAAACTTCGTAAGCA
ACTGCAGCAATCACCGAAAGACCGCAGCGAAAATCTCATGATCGTGGACT
TGGTTAGAAATGACCTTAGCCGAATGTGTGAAGTCGGCTCCGTGACTGTA
CCGAAACTGATGTGCGTCGAATCGTATGCCACTGTGCACCAGCTTGTCAG
CACGGTTCGCGGAAAATTGGCGCCGTCACGCGACGCCATTGACTGCGTTC
GGGCAGCATATCCGATGGGTTCCATGACAGGGGCGCCCAAGGTTCGAACG
ATGGAAATCATCGATCGTCTTGAATCCTCCGCGAGAGGTATATACTCTGG
AAGTATCGGTTACCTCAGTGTTTGCGGAGCTGTGGACTTGAACGTCGTGA
TCAGAACGGCTGTGCTCAACGGCTCAAGAGTCGAAATTGGAGTGGGAGGT
GCCATTGTGGCTATGAGCAACCCGCAAGACGAATACGAGGAAACAATATT
GAAAGGCATGCCAATCATGAAAGCATTGGCATTGAACACAACAGGTGTCA
CCGATGTTGTGGTTGTGCACGAACCGCAAGCTTGTGATGGGGTTGATCGC
ACGGGTGAAGCGTGCGAAACGATTACTACGAACAATGCGACATGA

protein sequence of Gvermi8034.t1

>Gvermi8034.t1 ID=Gvermi8034.t1|Name=Gvermi8034.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=765bp
MSLRLALIDNYDSYTFNLAHLIATANGNHPPQVFRSDAYSKLSQLHSEHG
QFDAFVLSPGPGTPVKHRDFSPLQREIVSGSTPTLAVCLGHQGLCHRYGA
AILHAPHGPKHGVISRVVKSNNECPLLRGTPNSFDVVRYHSLCVEPSSLP
SCLLPTLWTSDGGTDVLMGVRHATKPVFGLQFHPESVATQFGRQVASNFI
KLTAMYRKTQPIYPALKPSPEARPSCFRTLVRSTQLFVSPFALFKCLFGD
LKQSFWLDSSTNATPSSRCSSATPEEHCMGLVDAHPARYSIMGACHGPFS
ELVTYNVSKRITTVQKKKNRQTFHVSVFDYLQKVLKDRRTEHNPELPIEM
NGGYIGFFGYETKNDVDEAIENVHESCLPDAWFVFADRLLVVDHVLDRLY
FVALAREGHIEDYRDANNWFEDIRISMASLIDEKHVRDSRCQQTHNVQSP
LRFVPERSRSQYLADIGKCLGYINNGESYEVCLTNRLRTTLPPEFKSDPL
ELYSALRLVNPSPFSAFLRLDDDRAVCCSSPERYLQISSTGLVESKPIKG
TLPRGQTLEEDAKLRKQLQQSPKDRSENLMIVDLVRNDLSRMCEVGSVTV
PKLMCVESYATVHQLVSTVRGKLAPSRDAIDCVRAAYPMGSMTGAPKVRT
MEIIDRLESSARGIYSGSIGYLSVCGAVDLNVVIRTAVLNGSRVEIGVGG
AIVAMSNPQDEYEETILKGMPIMKALALNTTGVTDVVVVHEPQACDGVDR
TGEACETITTNNAT*

mRNA from alignment at ScGOVlb_24226:768907..771201+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi8034.t1 ID=Gvermi8034.t1|Name=Gvermi8034.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2295bp|location=Sequence derived from alignment at ScGOVlb_24226:768907..771201+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGTTACGCCTGGCGCTTATCGACAACTATGATTCATATACATTCAA
CCTTGCTCACCTCATAGCAACCGCAAATGGCAATCACCCGCCACAAGTGT
TTCGCAGTGACGCGTACTCTAAACTCTCACAATTGCATTCAGAGCATGGA
CAATTCGATGCTTTCGTTCTCTCTCCAGGCCCTGGCACACCTGTGAAACA
TCGAGACTTTTCCCCTCTCCAGCGCGAGATTGTTTCAGGTAGCACCCCAA
CCTTGGCTGTATGTCTCGGACACCAGGGCCTCTGCCACAGATACGGTGCC
GCAATACTTCACGCACCGCACGGACCAAAACACGGCGTCATTTCTCGCGT
TGTCAAGAGCAATAACGAATGCCCGCTGCTGCGCGGCACTCCTAATTCAT
TTGATGTCGTTCGCTACCATAGCCTGTGCGTCGAACCGAGCTCGCTTCCT
TCGTGCCTCCTTCCAACACTTTGGACCAGTGATGGAGGCACGGACGTTCT
TATGGGCGTCAGACATGCCACCAAGCCAGTCTTTGGGCTTCAGTTCCACC
CAGAATCGGTAGCCACCCAGTTTGGACGCCAAGTAGCTAGCAACTTTATC
AAGTTAACTGCCATGTATCGGAAGACTCAACCCATCTATCCTGCCTTGAA
GCCATCACCAGAGGCCCGCCCATCATGCTTTCGAACGCTGGTACGAAGTA
CCCAGCTTTTTGTATCACCATTTGCGCTTTTCAAGTGCCTGTTTGGCGAT
TTGAAGCAGTCGTTTTGGCTGGATAGTAGTACAAATGCAACCCCTTCTTC
CCGATGCTCTTCTGCCACGCCCGAAGAACACTGTATGGGTCTTGTCGATG
CACATCCAGCTCGGTACTCAATCATGGGCGCTTGCCACGGGCCATTCTCG
GAACTTGTAACATATAATGTGTCCAAACGTATCACTACAGTTCAGAAAAA
GAAGAATAGGCAGACCTTTCATGTTTCAGTATTCGACTACTTGCAGAAAG
TTCTCAAAGATCGCCGCACGGAGCACAATCCCGAGCTCCCAATAGAAATG
AACGGCGGGTACATAGGGTTCTTTGGATATGAGACGAAAAATGACGTCGA
TGAAGCTATAGAGAATGTACATGAATCGTGTCTGCCAGACGCATGGTTTG
TATTTGCCGATCGCCTTCTCGTCGTGGACCATGTCCTTGACAGACTTTAT
TTTGTTGCTCTTGCGAGGGAAGGTCACATTGAGGACTACCGAGACGCAAA
CAATTGGTTCGAAGACATTCGAATATCTATGGCCTCTCTCATCGATGAAA
AGCACGTGCGCGACAGCCGGTGCCAACAAACGCACAACGTACAGTCGCCA
TTGCGTTTTGTGCCAGAACGCAGTCGAAGTCAGTACCTGGCAGACATTGG
GAAGTGCCTGGGATATATAAATAATGGAGAAAGTTACGAAGTTTGTCTCA
CCAATCGGTTGCGGACCACCCTGCCGCCTGAGTTCAAGTCAGATCCCCTG
GAACTGTATAGCGCCCTACGATTGGTAAACCCTTCACCGTTCTCGGCTTT
TCTGCGGCTTGACGATGACCGAGCCGTTTGCTGCAGTTCACCTGAGCGAT
ATCTACAAATCTCCTCCACTGGTCTCGTGGAATCGAAGCCAATCAAGGGA
ACGCTTCCACGAGGGCAAACTCTGGAAGAGGACGCTAAACTTCGTAAGCA
ACTGCAGCAATCACCGAAAGACCGCAGCGAAAATCTCATGATCGTGGACT
TGGTTAGAAATGACCTTAGCCGAATGTGTGAAGTCGGCTCCGTGACTGTA
CCGAAACTGATGTGCGTCGAATCGTATGCCACTGTGCACCAGCTTGTCAG
CACGGTTCGCGGAAAATTGGCGCCGTCACGCGACGCCATTGACTGCGTTC
GGGCAGCATATCCGATGGGTTCCATGACAGGGGCGCCCAAGGTTCGAACG
ATGGAAATCATCGATCGTCTTGAATCCTCCGCGAGAGGTATATACTCTGG
AAGTATCGGTTACCTCAGTGTTTGCGGAGCTGTGGACTTGAACGTCGTGA
TCAGAACGGCTGTGCTCAACGGCTCAAGAGTCGAAATTGGAGTGGGAGGT
GCCATTGTGGCTATGAGCAACCCGCAAGACGAATACGAGGAAACAATATT
GAAAGGCATGCCAATCATGAAAGCATTGGCATTGAACACAACAGGTGTCA
CCGATGTTGTGGTTGTGCACGAACCGCAAGCTTGTGATGGGGTTGATCGC
ACGGGTGAAGCGTGCGAAACGATTACTACGAACAATGCGACATGA

Coding sequence (CDS) from alignment at ScGOVlb_24226:768907..771201+

>Gvermi8034.t1 ID=Gvermi8034.t1|Name=Gvermi8034.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2295bp|location=Sequence derived from alignment at ScGOVlb_24226:768907..771201+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGTTACGCCTGGCGCTTATCGACAACTATGATTCATATACATTCAA
CCTTGCTCACCTCATAGCAACCGCAAATGGCAATCACCCGCCACAAGTGT
TTCGCAGTGACGCGTACTCTAAACTCTCACAATTGCATTCAGAGCATGGA
CAATTCGATGCTTTCGTTCTCTCTCCAGGCCCTGGCACACCTGTGAAACA
TCGAGACTTTTCCCCTCTCCAGCGCGAGATTGTTTCAGGTAGCACCCCAA
CCTTGGCTGTATGTCTCGGACACCAGGGCCTCTGCCACAGATACGGTGCC
GCAATACTTCACGCACCGCACGGACCAAAACACGGCGTCATTTCTCGCGT
TGTCAAGAGCAATAACGAATGCCCGCTGCTGCGCGGCACTCCTAATTCAT
TTGATGTCGTTCGCTACCATAGCCTGTGCGTCGAACCGAGCTCGCTTCCT
TCGTGCCTCCTTCCAACACTTTGGACCAGTGATGGAGGCACGGACGTTCT
TATGGGCGTCAGACATGCCACCAAGCCAGTCTTTGGGCTTCAGTTCCACC
CAGAATCGGTAGCCACCCAGTTTGGACGCCAAGTAGCTAGCAACTTTATC
AAGTTAACTGCCATGTATCGGAAGACTCAACCCATCTATCCTGCCTTGAA
GCCATCACCAGAGGCCCGCCCATCATGCTTTCGAACGCTGGTACGAAGTA
CCCAGCTTTTTGTATCACCATTTGCGCTTTTCAAGTGCCTGTTTGGCGAT
TTGAAGCAGTCGTTTTGGCTGGATAGTAGTACAAATGCAACCCCTTCTTC
CCGATGCTCTTCTGCCACGCCCGAAGAACACTGTATGGGTCTTGTCGATG
CACATCCAGCTCGGTACTCAATCATGGGCGCTTGCCACGGGCCATTCTCG
GAACTTGTAACATATAATGTGTCCAAACGTATCACTACAGTTCAGAAAAA
GAAGAATAGGCAGACCTTTCATGTTTCAGTATTCGACTACTTGCAGAAAG
TTCTCAAAGATCGCCGCACGGAGCACAATCCCGAGCTCCCAATAGAAATG
AACGGCGGGTACATAGGGTTCTTTGGATATGAGACGAAAAATGACGTCGA
TGAAGCTATAGAGAATGTACATGAATCGTGTCTGCCAGACGCATGGTTTG
TATTTGCCGATCGCCTTCTCGTCGTGGACCATGTCCTTGACAGACTTTAT
TTTGTTGCTCTTGCGAGGGAAGGTCACATTGAGGACTACCGAGACGCAAA
CAATTGGTTCGAAGACATTCGAATATCTATGGCCTCTCTCATCGATGAAA
AGCACGTGCGCGACAGCCGGTGCCAACAAACGCACAACGTACAGTCGCCA
TTGCGTTTTGTGCCAGAACGCAGTCGAAGTCAGTACCTGGCAGACATTGG
GAAGTGCCTGGGATATATAAATAATGGAGAAAGTTACGAAGTTTGTCTCA
CCAATCGGTTGCGGACCACCCTGCCGCCTGAGTTCAAGTCAGATCCCCTG
GAACTGTATAGCGCCCTACGATTGGTAAACCCTTCACCGTTCTCGGCTTT
TCTGCGGCTTGACGATGACCGAGCCGTTTGCTGCAGTTCACCTGAGCGAT
ATCTACAAATCTCCTCCACTGGTCTCGTGGAATCGAAGCCAATCAAGGGA
ACGCTTCCACGAGGGCAAACTCTGGAAGAGGACGCTAAACTTCGTAAGCA
ACTGCAGCAATCACCGAAAGACCGCAGCGAAAATCTCATGATCGTGGACT
TGGTTAGAAATGACCTTAGCCGAATGTGTGAAGTCGGCTCCGTGACTGTA
CCGAAACTGATGTGCGTCGAATCGTATGCCACTGTGCACCAGCTTGTCAG
CACGGTTCGCGGAAAATTGGCGCCGTCACGCGACGCCATTGACTGCGTTC
GGGCAGCATATCCGATGGGTTCCATGACAGGGGCGCCCAAGGTTCGAACG
ATGGAAATCATCGATCGTCTTGAATCCTCCGCGAGAGGTATATACTCTGG
AAGTATCGGTTACCTCAGTGTTTGCGGAGCTGTGGACTTGAACGTCGTGA
TCAGAACGGCTGTGCTCAACGGCTCAAGAGTCGAAATTGGAGTGGGAGGT
GCCATTGTGGCTATGAGCAACCCGCAAGACGAATACGAGGAAACAATATT
GAAAGGCATGCCAATCATGAAAGCATTGGCATTGAACACAACAGGTGTCA
CCGATGTTGTGGTTGTGCACGAACCGCAAGCTTGTGATGGGGTTGATCGC
ACGGGTGAAGCGTGCGAAACGATTACTACGAACAATGCGACATGA