Gvermi8024.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8024.t1
Unique NameGvermi8024.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length164
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:683127..683618 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog109760.SPPG_02147T0
Max annot lvl33154|Opisthokonta
Evalue1.15e-05
EggNOG OGs2CS99@1|root,2RAXQ@2759|Eukaryota,3ACDR@33154|Opisthokonta
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8024Gvermi8024Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 683127..683618 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8024.t1.stop1Gvermi8024.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 683127..683129 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8024.t1.CDS1Gvermi8024.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 683127..683618 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8024.t1.exon1Gvermi8024.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 683127..683618 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8024.t1.start1Gvermi8024.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 683616..683618 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8024.t1Gvermi8024.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 683127..683618 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8024.t1 ID=Gvermi8024.t1|Name=Gvermi8024.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=164bp
MDSSAPPHPPRREKAIAPAIYFTPSSSSVNLHPRPATASKSYEHMSLAEL
QSELDYLLKSVSMLLASNSEMQQMDPQRTDPDLTQAIGENIAIVLRRNAS
ISRLRHFIGLLQPHALPATQVPPHAPQQPTAPPAARAVTFASPENHPNNH
HAPPSTMRNGLYL*
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spliced messenger RNA

>Gvermi8024.t1 ID=Gvermi8024.t1|Name=Gvermi8024.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=492bp|location=Sequence derived from alignment at ScGOVlb_24226:683127..683618- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTCTTCCGCCCCCCCGCACCCTCCGCGTCGCGAGAAGGCCATCGC
CCCGGCCATCTACTTCACCCCGTCCTCGTCCTCAGTCAACCTGCATCCCC
GTCCGGCAACCGCCTCCAAGTCGTACGAGCACATGAGTCTGGCCGAGCTG
CAGTCCGAGCTCGACTACCTCCTCAAGAGCGTGTCCATGCTGCTCGCATC
TAACTCCGAGATGCAGCAGATGGACCCGCAGCGCACCGACCCCGACCTCA
CACAGGCCATCGGCGAAAATATCGCCATCGTTCTGCGACGCAACGCTTCC
ATCTCTCGTTTACGGCACTTCATCGGCCTGCTTCAGCCCCACGCGCTCCC
CGCTACACAGGTGCCGCCCCACGCCCCGCAGCAGCCCACCGCGCCTCCTG
CCGCCCGCGCCGTCACCTTTGCATCTCCTGAAAACCACCCCAACAATCAT
CACGCACCGCCTTCAACCATGCGCAACGGCTTGTATCTCTAA
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protein sequence of Gvermi8024.t1

>Gvermi8024.t1 ID=Gvermi8024.t1|Name=Gvermi8024.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=164bp
MDSSAPPHPPRREKAIAPAIYFTPSSSSVNLHPRPATASKSYEHMSLAEL
QSELDYLLKSVSMLLASNSEMQQMDPQRTDPDLTQAIGENIAIVLRRNAS
ISRLRHFIGLLQPHALPATQVPPHAPQQPTAPPAARAVTFASPENHPNNH
HAPPSTMRNGLYL*
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mRNA from alignment at ScGOVlb_24226:683127..683618-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8024.t1 ID=Gvermi8024.t1|Name=Gvermi8024.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=492bp|location=Sequence derived from alignment at ScGOVlb_24226:683127..683618- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATTCTTCCGCCCCCCCGCACCCTCCGCGTCGCGAGAAGGCCATCGC
CCCGGCCATCTACTTCACCCCGTCCTCGTCCTCAGTCAACCTGCATCCCC
GTCCGGCAACCGCCTCCAAGTCGTACGAGCACATGAGTCTGGCCGAGCTG
CAGTCCGAGCTCGACTACCTCCTCAAGAGCGTGTCCATGCTGCTCGCATC
TAACTCCGAGATGCAGCAGATGGACCCGCAGCGCACCGACCCCGACCTCA
CACAGGCCATCGGCGAAAATATCGCCATCGTTCTGCGACGCAACGCTTCC
ATCTCTCGTTTACGGCACTTCATCGGCCTGCTTCAGCCCCACGCGCTCCC
CGCTACACAGGTGCCGCCCCACGCCCCGCAGCAGCCCACCGCGCCTCCTG
CCGCCCGCGCCGTCACCTTTGCATCTCCTGAAAACCACCCCAACAATCAT
CACGCACCGCCTTCAACCATGCGCAACGGCTTGTATCTCTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:683127..683618-

>Gvermi8024.t1 ID=Gvermi8024.t1|Name=Gvermi8024.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=492bp|location=Sequence derived from alignment at ScGOVlb_24226:683127..683618- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATTCTTCCGCCCCCCCGCACCCTCCGCGTCGCGAGAAGGCCATCGC
CCCGGCCATCTACTTCACCCCGTCCTCGTCCTCAGTCAACCTGCATCCCC
GTCCGGCAACCGCCTCCAAGTCGTACGAGCACATGAGTCTGGCCGAGCTG
CAGTCCGAGCTCGACTACCTCCTCAAGAGCGTGTCCATGCTGCTCGCATC
TAACTCCGAGATGCAGCAGATGGACCCGCAGCGCACCGACCCCGACCTCA
CACAGGCCATCGGCGAAAATATCGCCATCGTTCTGCGACGCAACGCTTCC
ATCTCTCGTTTACGGCACTTCATCGGCCTGCTTCAGCCCCACGCGCTCCC
CGCTACACAGGTGCCGCCCCACGCCCCGCAGCAGCCCACCGCGCCTCCTG
CCGCCCGCGCCGTCACCTTTGCATCTCCTGAAAACCACCCCAACAATCAT
CACGCACCGCCTTCAACCATGCGCAACGGCTTGTATCTCTAA
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