Gvermi802.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi802.t1
Unique NameGvermi802.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length321
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:410222..411268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi802Gvermi802Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2952 410222..411268 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi802.t1Gvermi802.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2952 410222..411268 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi802.t1.start1Gvermi802.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2952 410222..410224 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi802.t1.CDS1Gvermi802.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 410222..410656 +
Gvermi802.t1.CDS2Gvermi802.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 410741..411268 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi802.t1.exon1Gvermi802.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 410222..410656 +
Gvermi802.t1.exon2Gvermi802.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 410741..411268 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi802.t1.intron1Gvermi802.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_2952 410657..410740 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi802.t1.stop1Gvermi802.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2952 411266..411268 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi802.t1 ID=Gvermi802.t1|Name=Gvermi802.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=321bp
MRFRTVPEIAWNDQKWNRVDANRAHWLHTPVYGDNAPTTVGHCDTPYLRC
ADEREVQARLQVLILKECSHQRAGRTGSIADGRSAIALLPFDPPYDRLYW
LTWNRCGTHLADETRVRTAFGYFYGWHNTEFHDVPSGQRPKYYLKVLDPY
DSLGRFVMLVASTEFAVGTLMAYLQTTDEGVTSYSRCRDGCLYWDSSYQL
TAGRLLPLSAPIIRDLRSFGIQNLVKGTAWSESEAETLLDYNLQVSWNDT
PGFVWYDYGEDKFHPIVRSPNGDNDGRAYPDFPRLAPSRVPQVPRLRVPD
YDPLMESLAHNAPRRLPAPS*
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spliced messenger RNA

>Gvermi802.t1 ID=Gvermi802.t1|Name=Gvermi802.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=963bp|location=Sequence derived from alignment at ScGOVlb_2952:410222..411268+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
atgcgatttcgcaccgtaccggaaattgcgtggaacgaccagaagtggaa
ccgcgtggatgcaaatcgcgctcactggcttcatactccggtatatggtg
acaacgctccaacgacggtaggacactgcgatactccatacctgaggtgc
gctgatgaacgagaggtccaggcgcggctccaggtactgatccttaagga
atgctcgcaccagagagcggggcgaaccggaagcattgccgatgggcgct
ctgccatcgcgttgttgcccttcgatcccccatacgatcgcctctactgg
ctcacctggaatcgatgtgggacgcaccttgcggacgagactcgagtacg
caccgcttttgggtacttctatgggtggcataacacggaattccatgatg
tgccttccggacaacgtccgaagtactaccttaaggtcctggatccctat
gactccctaggacggtttgtcatgttggtcgcctcgacggagttcgcggt
cggcaccctgatggcgtatctccaaacaacggacgaaggcgtaacctcct
attcccgatgccgcgacggctgcctctactgggactcgtcatatcagctg
accgccgggcgtttgctccccttgtcggcgcccatcatacgggacctgcg
ctcctttggcatccaaaacctggttaagggcaccgcatggagtgagtccg
aggcagagacgctgttggattacaacctccaggtgtcgtggaatgacacg
ccgggtttcgtctggtacgactatggtgaggacaagttccaccccattgt
gaggagtccaaatggagacaatgacgggcgagcataccctgactttcccc
gtctggcgccttctcgggttcctcaggtgccacggctccgagtgcccgac
tacgaccccttgatggagagcctggcgcacaatgcgccccgtcgattacc
ggctccgtcttag
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protein sequence of Gvermi802.t1

>Gvermi802.t1 ID=Gvermi802.t1|Name=Gvermi802.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=321bp
MRFRTVPEIAWNDQKWNRVDANRAHWLHTPVYGDNAPTTVGHCDTPYLRC
ADEREVQARLQVLILKECSHQRAGRTGSIADGRSAIALLPFDPPYDRLYW
LTWNRCGTHLADETRVRTAFGYFYGWHNTEFHDVPSGQRPKYYLKVLDPY
DSLGRFVMLVASTEFAVGTLMAYLQTTDEGVTSYSRCRDGCLYWDSSYQL
TAGRLLPLSAPIIRDLRSFGIQNLVKGTAWSESEAETLLDYNLQVSWNDT
PGFVWYDYGEDKFHPIVRSPNGDNDGRAYPDFPRLAPSRVPQVPRLRVPD
YDPLMESLAHNAPRRLPAPS*
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mRNA from alignment at ScGOVlb_2952:410222..411268+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi802.t1 ID=Gvermi802.t1|Name=Gvermi802.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1047bp|location=Sequence derived from alignment at ScGOVlb_2952:410222..411268+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atgcgatttcgcaccgtaccggaaattgcgtggaacgaccagaagtggaa
ccgcgtggatgcaaatcgcgctcactggcttcatactccggtatatggtg
acaacgctccaacgacggtaggacactgcgatactccatacctgaggtgc
gctgatgaacgagaggtccaggcgcggctccaggtactgatccttaagga
atgctcgcaccagagagcggggcgaaccggaagcattgccgatgggcgct
ctgccatcgcgttgttgcccttcgatcccccatacgatcgcctctactgg
ctcacctggaatcgatgtgggacgcaccttgcggacgagactcgagtacg
caccgcttttgggtacttctatgggtggcataacacggaattccatgatg
tgccttccggacaacgtccgaagtactaccttaaggtgaatgactcctag
acagaccactgggtatcccggcacctctgtgtggcgacgcccattaactt
cgtgtatcacgcctccgaggtcctggatccctatgactccctaggacggt
ttgtcatgttggtcgcctcgacggagttcgcggtcggcaccctgatggcg
tatctccaaacaacggacgaaggcgtaacctcctattcccgatgccgcga
cggctgcctctactgggactcgtcatatcagctgaccgccgggcgtttgc
tccccttgtcggcgcccatcatacgggacctgcgctcctttggcatccaa
aacctggttaagggcaccgcatggagtgagtccgaggcagagacgctgtt
ggattacaacctccaggtgtcgtggaatgacacgccgggtttcgtctggt
acgactatggtgaggacaagttccaccccattgtgaggagtccaaatgga
gacaatgacgggcgagcataccctgactttccccgtctggcgccttctcg
ggttcctcaggtgccacggctccgagtgcccgactacgaccccttgatgg
agagcctggcgcacaatgcgccccgtcgattaccggctccgtcttag
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Coding sequence (CDS) from alignment at ScGOVlb_2952:410222..411268+

>Gvermi802.t1 ID=Gvermi802.t1|Name=Gvermi802.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=963bp|location=Sequence derived from alignment at ScGOVlb_2952:410222..411268+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atgcgatttcgcaccgtaccggaaattgcgtggaacgaccagaagtggaa
ccgcgtggatgcaaatcgcgctcactggcttcatactccggtatatggtg
acaacgctccaacgacggtaggacactgcgatactccatacctgaggtgc
gctgatgaacgagaggtccaggcgcggctccaggtactgatccttaagga
atgctcgcaccagagagcggggcgaaccggaagcattgccgatgggcgct
ctgccatcgcgttgttgcccttcgatcccccatacgatcgcctctactgg
ctcacctggaatcgatgtgggacgcaccttgcggacgagactcgagtacg
caccgcttttgggtacttctatgggtggcataacacggaattccatgatg
tgccttccggacaacgtccgaagtactaccttaaggtcctggatccctat
gactccctaggacggtttgtcatgttggtcgcctcgacggagttcgcggt
cggcaccctgatggcgtatctccaaacaacggacgaaggcgtaacctcct
attcccgatgccgcgacggctgcctctactgggactcgtcatatcagctg
accgccgggcgtttgctccccttgtcggcgcccatcatacgggacctgcg
ctcctttggcatccaaaacctggttaagggcaccgcatggagtgagtccg
aggcagagacgctgttggattacaacctccaggtgtcgtggaatgacacg
ccgggtttcgtctggtacgactatggtgaggacaagttccaccccattgt
gaggagtccaaatggagacaatgacgggcgagcataccctgactttcccc
gtctggcgccttctcgggttcctcaggtgccacggctccgagtgcccgac
tacgaccccttgatggagagcctggcgcacaatgcgccccgtcgattacc
ggctccgtcttag
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