Gvermi8017.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8017.t1
Unique NameGvermi8017.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length306
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:671110..672027 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704645.1
Preferred nameSURF1
PFAMsSURF1
Max annot lvl2759|Eukaryota
KEGG koko:K14724,ko:K14998
KEGG TC2.A.36.1.12,2.A.36.1.9,3.D.4.8
GOsGO:0002164,GO:0002165,GO:0002168,GO:0003674,GO:0003824,GO:0004129,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0006091,GO:0006119,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006996,GO:0007005,GO:0007275,GO:0007610,GO:0007632,GO:0008150,GO:0008152,GO:0008324,GO:0008535,GO:0009055,GO:0009058,GO:0009060,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009314,GO:0009416,GO:0009453,GO:0009605,GO:0009628,GO:0009791,GO:0009987,GO:0015002,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015672,GO:0015980,GO:0016020,GO:0016021,GO:0016043,GO:0016310,GO:0016491,GO:0016675,GO:0016676,GO:0017004,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019866,GO:0022607,GO:0022857,GO:0022890,GO:0022900,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0033108,GO:0033617,GO:0034220,GO:0034622,GO:0034641,GO:0034654,GO:0040011,GO:0042330,GO:0042331,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045333,GO:0046034,GO:0046390,GO:0046483,GO:0048856,GO:0050896,GO:0051082,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0055114,GO:0065003,GO:0070469,GO:0071704,GO:0071840,GO:0072521,GO:0072522,GO:0090407,GO:0098655,GO:0098660,GO:0098662,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600
Evalue3.94e-44
EggNOG OGsCOG3346@1|root,KOG1563@2759|Eukaryota
DescriptionProbably involved in the biogenesis of the COX complex
COG categoryU
BRITEko00000,ko02000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8017Gvermi8017Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 671110..672027 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8017.t1.stop1Gvermi8017.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 671110..671112 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8017.t1.CDS1Gvermi8017.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 671110..672027 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8017.t1.exon1Gvermi8017.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 671110..672027 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8017.t1.start1Gvermi8017.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 672025..672027 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8017.t1Gvermi8017.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 671110..672027 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8017.t1 ID=Gvermi8017.t1|Name=Gvermi8017.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=306bp
MLSTSAVLRVSPAHPTRLLLRRRLSTQPQHAASSASAGASRSSTVLFGVP
IALTFSLGVWQLYRLRRKQKLIVDRKHRLSSDPIHVDSLFQPSDTDHRRI
RVTGRFLHQHEMLLGPRSAPKDTPTPVLQWGGSTGLQVITPLKTDDGRIV
LVNRGWIPQRLADRSRRSSAQVNPYLFLTKFDHNTQTCQYHDSSVLSPQV
SVVGVVRNTDERNRFTPHNVPSKDEWFYVDASAMLEAHGLEGCDRVVELL
HPYPQSGWPYPRALDLYGEFRTPPSTHVTYAITWFSLSACIALLTRFRAR
QKRIV*
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spliced messenger RNA

>Gvermi8017.t1 ID=Gvermi8017.t1|Name=Gvermi8017.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=918bp|location=Sequence derived from alignment at ScGOVlb_24226:671110..672027- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCTCCACCTCCGCCGTGCTCCGCGTTTCACCCGCGCACCCCACTCG
CCTCTTGCTGCGGCGGCGCCTCTCCACCCAACCACAACATGCCGCTTCCT
CAGCTTCGGCAGGAGCCTCGCGGTCCTCCACTGTGCTCTTTGGCGTCCCC
ATCGCGCTCACTTTCTCCTTGGGCGTCTGGCAACTCTACCGCCTACGTCG
AAAACAAAAATTGATCGTCGACCGTAAACATCGTCTCTCTTCTGACCCCA
TACACGTCGATTCGCTCTTTCAACCTTCCGACACGGATCATCGCCGTATC
CGAGTCACAGGCCGCTTCCTGCACCAACATGAAATGTTGCTCGGCCCTAG
GTCGGCCCCTAAAGACACCCCAACGCCGGTCTTGCAATGGGGTGGTTCAA
CAGGTCTGCAAGTTATCACACCGCTCAAAACAGATGATGGCCGCATCGTC
TTGGTCAATCGCGGTTGGATTCCTCAACGATTAGCAGATCGGTCACGACG
CAGTTCTGCGCAAGTGAATCCATACTTATTCTTGACAAAATTTGACCACA
ACACCCAAACGTGCCAGTACCACGATTCCAGCGTTCTTTCTCCACAAGTA
TCCGTCGTTGGCGTTGTAAGAAACACAGACGAGCGCAATCGTTTCACACC
ACACAATGTTCCATCAAAAGACGAATGGTTTTATGTGGATGCGAGTGCTA
TGCTGGAAGCACATGGTTTAGAGGGTTGCGATCGCGTTGTGGAACTGTTA
CATCCTTATCCGCAGTCAGGCTGGCCTTACCCTCGAGCGCTTGACTTGTA
TGGCGAGTTCAGAACGCCACCAAGTACTCACGTCACGTATGCCATCACGT
GGTTTAGTCTAAGCGCCTGCATTGCGTTGCTAACCCGTTTTAGAGCTCGA
CAAAAACGTATTGTTTAG
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protein sequence of Gvermi8017.t1

>Gvermi8017.t1 ID=Gvermi8017.t1|Name=Gvermi8017.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=306bp
MLSTSAVLRVSPAHPTRLLLRRRLSTQPQHAASSASAGASRSSTVLFGVP
IALTFSLGVWQLYRLRRKQKLIVDRKHRLSSDPIHVDSLFQPSDTDHRRI
RVTGRFLHQHEMLLGPRSAPKDTPTPVLQWGGSTGLQVITPLKTDDGRIV
LVNRGWIPQRLADRSRRSSAQVNPYLFLTKFDHNTQTCQYHDSSVLSPQV
SVVGVVRNTDERNRFTPHNVPSKDEWFYVDASAMLEAHGLEGCDRVVELL
HPYPQSGWPYPRALDLYGEFRTPPSTHVTYAITWFSLSACIALLTRFRAR
QKRIV*
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mRNA from alignment at ScGOVlb_24226:671110..672027-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8017.t1 ID=Gvermi8017.t1|Name=Gvermi8017.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=918bp|location=Sequence derived from alignment at ScGOVlb_24226:671110..672027- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCTCCACCTCCGCCGTGCTCCGCGTTTCACCCGCGCACCCCACTCG
CCTCTTGCTGCGGCGGCGCCTCTCCACCCAACCACAACATGCCGCTTCCT
CAGCTTCGGCAGGAGCCTCGCGGTCCTCCACTGTGCTCTTTGGCGTCCCC
ATCGCGCTCACTTTCTCCTTGGGCGTCTGGCAACTCTACCGCCTACGTCG
AAAACAAAAATTGATCGTCGACCGTAAACATCGTCTCTCTTCTGACCCCA
TACACGTCGATTCGCTCTTTCAACCTTCCGACACGGATCATCGCCGTATC
CGAGTCACAGGCCGCTTCCTGCACCAACATGAAATGTTGCTCGGCCCTAG
GTCGGCCCCTAAAGACACCCCAACGCCGGTCTTGCAATGGGGTGGTTCAA
CAGGTCTGCAAGTTATCACACCGCTCAAAACAGATGATGGCCGCATCGTC
TTGGTCAATCGCGGTTGGATTCCTCAACGATTAGCAGATCGGTCACGACG
CAGTTCTGCGCAAGTGAATCCATACTTATTCTTGACAAAATTTGACCACA
ACACCCAAACGTGCCAGTACCACGATTCCAGCGTTCTTTCTCCACAAGTA
TCCGTCGTTGGCGTTGTAAGAAACACAGACGAGCGCAATCGTTTCACACC
ACACAATGTTCCATCAAAAGACGAATGGTTTTATGTGGATGCGAGTGCTA
TGCTGGAAGCACATGGTTTAGAGGGTTGCGATCGCGTTGTGGAACTGTTA
CATCCTTATCCGCAGTCAGGCTGGCCTTACCCTCGAGCGCTTGACTTGTA
TGGCGAGTTCAGAACGCCACCAAGTACTCACGTCACGTATGCCATCACGT
GGTTTAGTCTAAGCGCCTGCATTGCGTTGCTAACCCGTTTTAGAGCTCGA
CAAAAACGTATTGTTTAG
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Coding sequence (CDS) from alignment at ScGOVlb_24226:671110..672027-

>Gvermi8017.t1 ID=Gvermi8017.t1|Name=Gvermi8017.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=918bp|location=Sequence derived from alignment at ScGOVlb_24226:671110..672027- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCTCCACCTCCGCCGTGCTCCGCGTTTCACCCGCGCACCCCACTCG
CCTCTTGCTGCGGCGGCGCCTCTCCACCCAACCACAACATGCCGCTTCCT
CAGCTTCGGCAGGAGCCTCGCGGTCCTCCACTGTGCTCTTTGGCGTCCCC
ATCGCGCTCACTTTCTCCTTGGGCGTCTGGCAACTCTACCGCCTACGTCG
AAAACAAAAATTGATCGTCGACCGTAAACATCGTCTCTCTTCTGACCCCA
TACACGTCGATTCGCTCTTTCAACCTTCCGACACGGATCATCGCCGTATC
CGAGTCACAGGCCGCTTCCTGCACCAACATGAAATGTTGCTCGGCCCTAG
GTCGGCCCCTAAAGACACCCCAACGCCGGTCTTGCAATGGGGTGGTTCAA
CAGGTCTGCAAGTTATCACACCGCTCAAAACAGATGATGGCCGCATCGTC
TTGGTCAATCGCGGTTGGATTCCTCAACGATTAGCAGATCGGTCACGACG
CAGTTCTGCGCAAGTGAATCCATACTTATTCTTGACAAAATTTGACCACA
ACACCCAAACGTGCCAGTACCACGATTCCAGCGTTCTTTCTCCACAAGTA
TCCGTCGTTGGCGTTGTAAGAAACACAGACGAGCGCAATCGTTTCACACC
ACACAATGTTCCATCAAAAGACGAATGGTTTTATGTGGATGCGAGTGCTA
TGCTGGAAGCACATGGTTTAGAGGGTTGCGATCGCGTTGTGGAACTGTTA
CATCCTTATCCGCAGTCAGGCTGGCCTTACCCTCGAGCGCTTGACTTGTA
TGGCGAGTTCAGAACGCCACCAAGTACTCACGTCACGTATGCCATCACGT
GGTTTAGTCTAAGCGCCTGCATTGCGTTGCTAACCCGTTTTAGAGCTCGA
CAAAAACGTATTGTTTAG
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