Gvermi8005.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8005.t1
Unique NameGvermi8005.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length313
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:615766..616804 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8005Gvermi8005Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 615766..617451 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8005.t1Gvermi8005.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 615766..616804 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8005.t1.start1Gvermi8005.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 615766..615768 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8005.t1.CDS1Gvermi8005.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 615766..616671 +
Gvermi8005.t1.CDS2Gvermi8005.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 616772..616804 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8005.t1.exon1Gvermi8005.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 615766..616671 +
Gvermi8005.t1.exon2Gvermi8005.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 616772..616804 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8005.t1.intron1Gvermi8005.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 616672..616771 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8005.t1.stop1Gvermi8005.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 616802..616804 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8005.t1 ID=Gvermi8005.t1|Name=Gvermi8005.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=313bp
MQLRVSAKPSALAVVIGVIELLLSEFFKFTSDAAAAWHRRRKLYRTGRFR
IRSNPFLRNPDTFFSSALLAVLLALTLVLELSISSATFPDSSRVPRSHNI
RCFGPKRETRYFNKHGPRTSELGDDRVAAYVTQANCRDSLIDLSIQGPAA
LGQGYPGCLPPFESQAVDVVLAIQGGAVGFVANSEAGDPHLDYGIERDGE
IAAPDMGEELAGTSFWHVMMRSKGGSVAFWTFGEQNASQRIASNLGIPTH
FLEDSPQSFDAESVANVSCFSNSLTCFLEAGRQALAATAVLRKYEEDNLG
VLWSEMDETDQR*
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spliced messenger RNA

>Gvermi8005.t1 ID=Gvermi8005.t1|Name=Gvermi8005.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=939bp|location=Sequence derived from alignment at ScGOVlb_24226:615766..616804+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCTTCGCGTCTCTGCGAAGCCTTCCGCCTTGGCCGTCGTCATCGG
CGTCATTGAGCTGCTTCTCAGCGAATTCTTCAAGTTTACTTCCGACGCTG
CCGCGGCGTGGCACCGCCGTAGAAAGCTCTACCGCACCGGCCGCTTTCGC
ATACGCTCCAATCCCTTCTTGCGCAATCCAGACACGTTCTTCTCCTCTGC
ACTCCTGGCTGTGCTGCTCGCCCTCACACTCGTGCTCGAGCTGTCAATCA
GTTCCGCTACCTTTCCAGACTCTTCACGCGTTCCACGTTCCCACAATATT
CGATGCTTTGGCCCAAAACGCGAAACGCGCTACTTTAACAAGCATGGCCC
CCGGACAAGCGAACTTGGCGACGACAGAGTCGCTGCCTATGTTACCCAGG
CAAACTGTCGCGACAGCTTGATCGACCTTTCCATCCAAGGGCCCGCGGCA
TTGGGCCAAGGCTACCCCGGCTGCTTACCACCGTTCGAGTCGCAAGCTGT
GGATGTCGTCCTTGCAATTCAGGGAGGCGCTGTAGGCTTCGTTGCAAACA
GCGAGGCTGGCGATCCTCATCTCGACTACGGCATTGAGCGGGATGGAGAA
ATTGCTGCTCCGGATATGGGCGAAGAGCTTGCTGGGACAAGTTTTTGGCA
CGTCATGATGCGCTCGAAGGGTGGGAGTGTTGCGTTCTGGACGTTTGGCG
AGCAGAACGCTTCCCAGCGCATTGCGTCTAATCTGGGCATTCCAACGCAT
TTTCTCGAGGACTCACCGCAGTCTTTCGACGCTGAGAGTGTGGCTAACGT
CAGCTGTTTCAGCAATTCACTGACGTGTTTTCTAGAGGCAGGCCGACAGG
CGTTGGCTGCTACGGCGGTGCTGCGCAAATACGAAGAAGACAACCTGGGC
GTCTTATGGAGCGAAATGGACGAAACGGACCAACGATAA
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protein sequence of Gvermi8005.t1

>Gvermi8005.t1 ID=Gvermi8005.t1|Name=Gvermi8005.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=313bp
MQLRVSAKPSALAVVIGVIELLLSEFFKFTSDAAAAWHRRRKLYRTGRFR
IRSNPFLRNPDTFFSSALLAVLLALTLVLELSISSATFPDSSRVPRSHNI
RCFGPKRETRYFNKHGPRTSELGDDRVAAYVTQANCRDSLIDLSIQGPAA
LGQGYPGCLPPFESQAVDVVLAIQGGAVGFVANSEAGDPHLDYGIERDGE
IAAPDMGEELAGTSFWHVMMRSKGGSVAFWTFGEQNASQRIASNLGIPTH
FLEDSPQSFDAESVANVSCFSNSLTCFLEAGRQALAATAVLRKYEEDNLG
VLWSEMDETDQR*
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mRNA from alignment at ScGOVlb_24226:615766..616804+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8005.t1 ID=Gvermi8005.t1|Name=Gvermi8005.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1039bp|location=Sequence derived from alignment at ScGOVlb_24226:615766..616804+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGCTTCGCGTCTCTGCGAAGCCTTCCGCCTTGGCCGTCGTCATCGG
CGTCATTGAGCTGCTTCTCAGCGAATTCTTCAAGTTTACTTCCGACGCTG
CCGCGGCGTGGCACCGCCGTAGAAAGCTCTACCGCACCGGCCGCTTTCGC
ATACGCTCCAATCCCTTCTTGCGCAATCCAGACACGTTCTTCTCCTCTGC
ACTCCTGGCTGTGCTGCTCGCCCTCACACTCGTGCTCGAGCTGTCAATCA
GTTCCGCTACCTTTCCAGACTCTTCACGCGTTCCACGTTCCCACAATATT
CGATGCTTTGGCCCAAAACGCGAAACGCGCTACTTTAACAAGCATGGCCC
CCGGACAAGCGAACTTGGCGACGACAGAGTCGCTGCCTATGTTACCCAGG
CAAACTGTCGCGACAGCTTGATCGACCTTTCCATCCAAGGGCCCGCGGCA
TTGGGCCAAGGCTACCCCGGCTGCTTACCACCGTTCGAGTCGCAAGCTGT
GGATGTCGTCCTTGCAATTCAGGGAGGCGCTGTAGGCTTCGTTGCAAACA
GCGAGGCTGGCGATCCTCATCTCGACTACGGCATTGAGCGGGATGGAGAA
ATTGCTGCTCCGGATATGGGCGAAGAGCTTGCTGGGACAAGTTTTTGGCA
CGTCATGATGCGCTCGAAGGGTGGGAGTGTTGCGTTCTGGACGTTTGGCG
AGCAGAACGCTTCCCAGCGCATTGCGTCTAATCTGGGCATTCCAACGCAT
TTTCTCGAGGACTCACCGCAGTCTTTCGACGCTGAGAGTGTGGCTAACGT
CAGCTGTTTCAGCAATTCACTGACGTGTTTTCTAGAGGCAGGCCGACAGG
CGTTGGCTGCTACGGCGGTGCTGCGCAAATACGAAGAAGACAACCTGGGC
GTCTTAGTCTCAAGTCTGAAAGATGTTCAGTCTTCACTCTGCATATTCGA
ATCGCGAATGCAAGTGGAGGTTTCTTGGGTTTATCTTAACTTGTTCATTC
CGGAAGTGGAGCGAAATGGACGAAACGGACCAACGATAA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:615766..616804+

>Gvermi8005.t1 ID=Gvermi8005.t1|Name=Gvermi8005.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=939bp|location=Sequence derived from alignment at ScGOVlb_24226:615766..616804+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGCTTCGCGTCTCTGCGAAGCCTTCCGCCTTGGCCGTCGTCATCGG
CGTCATTGAGCTGCTTCTCAGCGAATTCTTCAAGTTTACTTCCGACGCTG
CCGCGGCGTGGCACCGCCGTAGAAAGCTCTACCGCACCGGCCGCTTTCGC
ATACGCTCCAATCCCTTCTTGCGCAATCCAGACACGTTCTTCTCCTCTGC
ACTCCTGGCTGTGCTGCTCGCCCTCACACTCGTGCTCGAGCTGTCAATCA
GTTCCGCTACCTTTCCAGACTCTTCACGCGTTCCACGTTCCCACAATATT
CGATGCTTTGGCCCAAAACGCGAAACGCGCTACTTTAACAAGCATGGCCC
CCGGACAAGCGAACTTGGCGACGACAGAGTCGCTGCCTATGTTACCCAGG
CAAACTGTCGCGACAGCTTGATCGACCTTTCCATCCAAGGGCCCGCGGCA
TTGGGCCAAGGCTACCCCGGCTGCTTACCACCGTTCGAGTCGCAAGCTGT
GGATGTCGTCCTTGCAATTCAGGGAGGCGCTGTAGGCTTCGTTGCAAACA
GCGAGGCTGGCGATCCTCATCTCGACTACGGCATTGAGCGGGATGGAGAA
ATTGCTGCTCCGGATATGGGCGAAGAGCTTGCTGGGACAAGTTTTTGGCA
CGTCATGATGCGCTCGAAGGGTGGGAGTGTTGCGTTCTGGACGTTTGGCG
AGCAGAACGCTTCCCAGCGCATTGCGTCTAATCTGGGCATTCCAACGCAT
TTTCTCGAGGACTCACCGCAGTCTTTCGACGCTGAGAGTGTGGCTAACGT
CAGCTGTTTCAGCAATTCACTGACGTGTTTTCTAGAGGCAGGCCGACAGG
CGTTGGCTGCTACGGCGGTGCTGCGCAAATACGAAGAAGACAACCTGGGC
GTCTTATGGAGCGAAATGGACGAAACGGACCAACGATAA
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