Gvermi8002.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi8002.t1
Unique Name	Gvermi8002.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	405

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24226	contig	ScGOVlb_24226:604526..605740 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1274524.BSONL12_18934
Preferred name	glpQ
PFAMs	GDPD,PhoD,PhoD_N
Max annot lvl	91061\|Bacilli
KEGG rclass	RC00017,RC00425
KEGG ko	ko:K01113,ko:K01126
KEGG Reaction	R01030,R01470,R04620
KEGG Pathway	ko00564,ko00790,ko01100,ko02020,map00564,map00790,map01100,map02020
KEGG Module	M00126
Evalue	7.05e-17
EggNOG OGs	COG0584@1\|root,COG0584@2\|Bacteria,1UY23@1239\|Firmicutes,4HEAD@91061\|Bacilli,1ZCIE@1386\|Bacillus
EC	3.1.3.1,3.1.4.46
Description	glycerophosphoryl diester phosphodiesterase
COG category	C
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi8002	Gvermi8002	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24226 604526..605740 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8002.t1.start1	Gvermi8002.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24226 604526..604528 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8002.t1.CDS1	Gvermi8002.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24226 604526..605740 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8002.t1.exon1	Gvermi8002.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24226 604526..605740 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8002.t1.stop1	Gvermi8002.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24226 605738..605740 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8002.t1	Gvermi8002.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24226 604526..605740 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24226:604526..605740+
coding sequence from alignment at ScGOVlb_24226:604526..605740+

mRNA sequence

>Gvermi8002.t1 ID=Gvermi8002.t1|Name=Gvermi8002.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=405bp
MRRSAQDDPTVTKPLFSVDDLEHDEHTLPQHVPPPPPLSRKGFFRNASGS
SRSPMVFLMRLRRALFFFFPRVLIAVVVLLVSVTLLPGGWRVALCAANLL
PAPALRPGENITLIAHRGCEFPYPENSIHALRLGAEQLHFVELDITLTSD
GNVVAMHDQTLDRTTNGTGIVCTKSLHDIKQLELNMPSRDPRGRIAQAKF
CTVPSRSGSTMPCTYRVPTLEEVFEELPDHTRFMLDIKECYTDGVSVPSP
KCTNCSVLMKATRDLMQRFAVLPEHVVFTSTQPASLRVFQQGIPRSTFAI
SLDQRYSHRKRSTFTDLITRGKYESAAMYYGLIAVRPDFVRLMRAQHVNG
VGKLGDVYAWTIRKDLDYRLARCAGVSKMIVAEPHRVKKSFTSGSIAEWL
AENV*

spliced messenger RNA

>Gvermi8002.t1 ID=Gvermi8002.t1|Name=Gvermi8002.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1215bp|location=Sequence derived from alignment at ScGOVlb_24226:604526..605740+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTCGTTCCGCCCAGGACGATCCGACCGTCACAAAACCGCTGTTTTC
TGTCGACGACCTCGAGCATGACGAGCACACCTTGCCACAGCATGTACCAC
CACCGCCACCTCTGTCGCGCAAGGGCTTCTTCCGCAATGCATCGGGCAGT
TCGCGATCCCCAATGGTCTTTCTCATGCGTTTAAGACGTGCTCTCTTCTT
CTTTTTCCCCCGCGTTCTCATCGCAGTTGTCGTGCTTCTTGTTTCAGTCA
CACTGCTGCCTGGCGGGTGGCGGGTGGCTTTGTGCGCAGCGAACCTGTTG
CCAGCCCCAGCGTTACGCCCCGGTGAGAACATAACGCTTATTGCTCATCG
AGGTTGCGAGTTCCCATATCCAGAGAACTCCATCCATGCGCTTCGCTTGG
GCGCGGAGCAATTGCACTTTGTCGAGCTGGACATCACACTAACTTCGGAT
GGAAACGTCGTTGCCATGCACGATCAAACCCTGGACCGAACAACGAACGG
AACGGGCATCGTGTGCACCAAGTCGCTCCACGACATCAAGCAACTTGAAC
TCAACATGCCCTCGCGTGACCCGCGAGGCCGAATTGCTCAAGCAAAGTTT
TGCACCGTTCCTTCACGCAGCGGAAGCACCATGCCGTGTACGTACCGCGT
GCCGACGCTTGAAGAGGTGTTTGAAGAGCTCCCGGATCACACGCGCTTCA
TGCTGGATATCAAGGAATGCTATACGGACGGTGTCTCAGTACCCAGTCCA
AAGTGCACCAACTGCTCGGTGTTGATGAAAGCGACGAGAGATCTCATGCA
AAGGTTTGCAGTGCTGCCGGAGCACGTCGTGTTCACGTCTACACAGCCCG
CGAGCCTTAGAGTGTTCCAGCAAGGTATACCAAGAAGCACATTTGCTATC
AGTTTGGATCAGAGATACTCTCACCGGAAGAGGTCAACTTTCACAGACCT
CATAACTCGCGGAAAATACGAATCAGCTGCCATGTACTATGGTTTGATTG
CCGTTCGCCCGGACTTTGTACGCCTCATGCGCGCGCAACATGTGAATGGA
GTCGGCAAACTCGGAGATGTTTACGCATGGACAATACGAAAGGATCTAGA
CTATCGGTTGGCCAGATGTGCGGGAGTGAGCAAAATGATCGTGGCCGAGC
CACATCGTGTGAAAAAGAGTTTTACGTCAGGGAGCATAGCTGAATGGCTA
GCGGAAAATGTGTAG

protein sequence of Gvermi8002.t1

>Gvermi8002.t1 ID=Gvermi8002.t1|Name=Gvermi8002.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=405bp
MRRSAQDDPTVTKPLFSVDDLEHDEHTLPQHVPPPPPLSRKGFFRNASGS
SRSPMVFLMRLRRALFFFFPRVLIAVVVLLVSVTLLPGGWRVALCAANLL
PAPALRPGENITLIAHRGCEFPYPENSIHALRLGAEQLHFVELDITLTSD
GNVVAMHDQTLDRTTNGTGIVCTKSLHDIKQLELNMPSRDPRGRIAQAKF
CTVPSRSGSTMPCTYRVPTLEEVFEELPDHTRFMLDIKECYTDGVSVPSP
KCTNCSVLMKATRDLMQRFAVLPEHVVFTSTQPASLRVFQQGIPRSTFAI
SLDQRYSHRKRSTFTDLITRGKYESAAMYYGLIAVRPDFVRLMRAQHVNG
VGKLGDVYAWTIRKDLDYRLARCAGVSKMIVAEPHRVKKSFTSGSIAEWL
AENV*

mRNA from alignment at ScGOVlb_24226:604526..605740+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi8002.t1 ID=Gvermi8002.t1|Name=Gvermi8002.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1215bp|location=Sequence derived from alignment at ScGOVlb_24226:604526..605740+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGTCGTTCCGCCCAGGACGATCCGACCGTCACAAAACCGCTGTTTTC
TGTCGACGACCTCGAGCATGACGAGCACACCTTGCCACAGCATGTACCAC
CACCGCCACCTCTGTCGCGCAAGGGCTTCTTCCGCAATGCATCGGGCAGT
TCGCGATCCCCAATGGTCTTTCTCATGCGTTTAAGACGTGCTCTCTTCTT
CTTTTTCCCCCGCGTTCTCATCGCAGTTGTCGTGCTTCTTGTTTCAGTCA
CACTGCTGCCTGGCGGGTGGCGGGTGGCTTTGTGCGCAGCGAACCTGTTG
CCAGCCCCAGCGTTACGCCCCGGTGAGAACATAACGCTTATTGCTCATCG
AGGTTGCGAGTTCCCATATCCAGAGAACTCCATCCATGCGCTTCGCTTGG
GCGCGGAGCAATTGCACTTTGTCGAGCTGGACATCACACTAACTTCGGAT
GGAAACGTCGTTGCCATGCACGATCAAACCCTGGACCGAACAACGAACGG
AACGGGCATCGTGTGCACCAAGTCGCTCCACGACATCAAGCAACTTGAAC
TCAACATGCCCTCGCGTGACCCGCGAGGCCGAATTGCTCAAGCAAAGTTT
TGCACCGTTCCTTCACGCAGCGGAAGCACCATGCCGTGTACGTACCGCGT
GCCGACGCTTGAAGAGGTGTTTGAAGAGCTCCCGGATCACACGCGCTTCA
TGCTGGATATCAAGGAATGCTATACGGACGGTGTCTCAGTACCCAGTCCA
AAGTGCACCAACTGCTCGGTGTTGATGAAAGCGACGAGAGATCTCATGCA
AAGGTTTGCAGTGCTGCCGGAGCACGTCGTGTTCACGTCTACACAGCCCG
CGAGCCTTAGAGTGTTCCAGCAAGGTATACCAAGAAGCACATTTGCTATC
AGTTTGGATCAGAGATACTCTCACCGGAAGAGGTCAACTTTCACAGACCT
CATAACTCGCGGAAAATACGAATCAGCTGCCATGTACTATGGTTTGATTG
CCGTTCGCCCGGACTTTGTACGCCTCATGCGCGCGCAACATGTGAATGGA
GTCGGCAAACTCGGAGATGTTTACGCATGGACAATACGAAAGGATCTAGA
CTATCGGTTGGCCAGATGTGCGGGAGTGAGCAAAATGATCGTGGCCGAGC
CACATCGTGTGAAAAAGAGTTTTACGTCAGGGAGCATAGCTGAATGGCTA
GCGGAAAATGTGTAG

Coding sequence (CDS) from alignment at ScGOVlb_24226:604526..605740+

>Gvermi8002.t1 ID=Gvermi8002.t1|Name=Gvermi8002.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1215bp|location=Sequence derived from alignment at ScGOVlb_24226:604526..605740+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGTCGTTCCGCCCAGGACGATCCGACCGTCACAAAACCGCTGTTTTC
TGTCGACGACCTCGAGCATGACGAGCACACCTTGCCACAGCATGTACCAC
CACCGCCACCTCTGTCGCGCAAGGGCTTCTTCCGCAATGCATCGGGCAGT
TCGCGATCCCCAATGGTCTTTCTCATGCGTTTAAGACGTGCTCTCTTCTT
CTTTTTCCCCCGCGTTCTCATCGCAGTTGTCGTGCTTCTTGTTTCAGTCA
CACTGCTGCCTGGCGGGTGGCGGGTGGCTTTGTGCGCAGCGAACCTGTTG
CCAGCCCCAGCGTTACGCCCCGGTGAGAACATAACGCTTATTGCTCATCG
AGGTTGCGAGTTCCCATATCCAGAGAACTCCATCCATGCGCTTCGCTTGG
GCGCGGAGCAATTGCACTTTGTCGAGCTGGACATCACACTAACTTCGGAT
GGAAACGTCGTTGCCATGCACGATCAAACCCTGGACCGAACAACGAACGG
AACGGGCATCGTGTGCACCAAGTCGCTCCACGACATCAAGCAACTTGAAC
TCAACATGCCCTCGCGTGACCCGCGAGGCCGAATTGCTCAAGCAAAGTTT
TGCACCGTTCCTTCACGCAGCGGAAGCACCATGCCGTGTACGTACCGCGT
GCCGACGCTTGAAGAGGTGTTTGAAGAGCTCCCGGATCACACGCGCTTCA
TGCTGGATATCAAGGAATGCTATACGGACGGTGTCTCAGTACCCAGTCCA
AAGTGCACCAACTGCTCGGTGTTGATGAAAGCGACGAGAGATCTCATGCA
AAGGTTTGCAGTGCTGCCGGAGCACGTCGTGTTCACGTCTACACAGCCCG
CGAGCCTTAGAGTGTTCCAGCAAGGTATACCAAGAAGCACATTTGCTATC
AGTTTGGATCAGAGATACTCTCACCGGAAGAGGTCAACTTTCACAGACCT
CATAACTCGCGGAAAATACGAATCAGCTGCCATGTACTATGGTTTGATTG
CCGTTCGCCCGGACTTTGTACGCCTCATGCGCGCGCAACATGTGAATGGA
GTCGGCAAACTCGGAGATGTTTACGCATGGACAATACGAAAGGATCTAGA
CTATCGGTTGGCCAGATGTGCGGGAGTGAGCAAAATGATCGTGGCCGAGC
CACATCGTGTGAAAAAGAGTTTTACGTCAGGGAGCATAGCTGAATGGCTA
GCGGAAAATGTGTAG