Gvermi8001.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8001.t1
Unique NameGvermi8001.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length315
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:603141..604085 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706574.1
Preferred namePSMD14
PFAMsJAB,MitMem_reg
Max annot lvl2759|Eukaryota
KEGG koko:K03030
KEGG Pathwayko03050,ko05169,map03050,map05169
KEGG ModuleM00341
GOsGO:0000266,GO:0000502,GO:0000724,GO:0000725,GO:0000726,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0004175,GO:0004843,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005829,GO:0005838,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006303,GO:0006310,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006810,GO:0006887,GO:0006950,GO:0006955,GO:0006974,GO:0006996,GO:0007005,GO:0007031,GO:0007088,GO:0007346,GO:0008047,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008237,GO:0008541,GO:0009056,GO:0009057,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010498,GO:0010564,GO:0010604,GO:0010638,GO:0010950,GO:0010952,GO:0010965,GO:0012505,GO:0016043,GO:0016192,GO:0016504,GO:0016559,GO:0016579,GO:0016787,GO:0019222,GO:0019538,GO:0019783,GO:0019941,GO:0022607,GO:0022624,GO:0030071,GO:0030141,GO:0030162,GO:0030163,GO:0030234,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031410,GO:0031597,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032268,GO:0032270,GO:0032436,GO:0032940,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033554,GO:0034399,GO:0034515,GO:0034622,GO:0034641,GO:0034774,GO:0036211,GO:0036230,GO:0036459,GO:0042119,GO:0042176,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043248,GO:0043299,GO:0043312,GO:0043412,GO:0043632,GO:0043687,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045055,GO:0045321,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046483,GO:0046903,GO:0048285,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051603,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0052547,GO:0052548,GO:0060205,GO:0060255,GO:0061133,GO:0061134,GO:0061135,GO:0061136,GO:0061578,GO:0062033,GO:0065003,GO:0065007,GO:0065009,GO:0070011,GO:0070013,GO:0070536,GO:0070628,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0080090,GO:0090068,GO:0090304,GO:0097708,GO:0098772,GO:0099503,GO:0101002,GO:0101005,GO:0140096,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1902906,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1904813,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:2001252
Evalue2.79e-167
EggNOG OGsCOG1310@1|root,KOG1555@2759|Eukaryota
Descriptionmetallopeptidase activity
COG categoryADK
BRITEko00000,ko00001,ko00002,ko01002,ko03051,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8001Gvermi8001Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 603141..604085 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8001.t1.start1Gvermi8001.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 603141..603143 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8001.t1.CDS1Gvermi8001.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 603141..604085 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8001.t1.exon1Gvermi8001.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 603141..604085 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8001.t1.stop1Gvermi8001.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 604083..604085 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8001.t1Gvermi8001.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 603141..604085 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8001.t1 ID=Gvermi8001.t1|Name=Gvermi8001.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=315bp
MDRLQRMFTQSQGAMAADAPVWDTAETVYISSLALLKMLKHGRAGVPMEV
MGLMLGDFVDDYTVKVIDVFAMPQSGTGVSVEAVDPVFQTKMLDMLKQTG
RPEVVVGWYHSHPSFGCWLSGVDINTQQSFEQLNPRAIAVVIDPIQSVKG
KVVIDAFRLIIPQMNMLGQEPRQTTSNVGHLHKPSIQALIHGLNRQYYSI
AIAYKKNHLEQEMLLNLHKSKWMDSLAVADFNKHSHQNEQTVAAMLQLAK
AYHKTVQEEQKLTSEQLVIARVGKRDAKKHLGADVAQLMAENINQCLGTM
LDTVIFRQEVATTD*
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spliced messenger RNA

>Gvermi8001.t1 ID=Gvermi8001.t1|Name=Gvermi8001.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=945bp|location=Sequence derived from alignment at ScGOVlb_24226:603141..604085+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCGCCTGCAGAGAATGTTCACGCAGAGCCAGGGCGCCATGGCCGC
CGACGCCCCCGTGTGGGACACCGCCGAGACCGTGTACATCTCGTCGCTCG
CCCTGCTCAAGATGCTCAAGCACGGCCGCGCCGGCGTGCCCATGGAGGTC
ATGGGCCTCATGCTCGGCGACTTTGTCGACGACTACACCGTCAAGGTCAT
CGACGTCTTCGCCATGCCGCAGAGCGGCACTGGTGTCTCCGTCGAGGCCG
TCGACCCCGTCTTCCAGACCAAGATGCTCGACATGCTCAAGCAGACCGGC
CGCCCAGAGGTTGTCGTCGGTTGGTACCACTCGCATCCCAGCTTCGGCTG
TTGGCTCTCCGGCGTCGACATCAACACTCAGCAGAGCTTCGAGCAGCTCA
ACCCGCGCGCCATTGCCGTCGTCATCGACCCCATCCAGTCTGTCAAGGGC
AAAGTCGTCATCGACGCCTTCCGCCTCATCATCCCGCAGATGAACATGCT
CGGCCAGGAACCACGCCAAACCACTTCCAACGTCGGCCACCTCCACAAGC
CCTCCATCCAGGCCCTCATCCACGGCCTCAACCGCCAGTACTATTCCATC
GCCATTGCCTACAAGAAAAATCACCTCGAGCAAGAAATGCTCCTCAACCT
CCACAAGAGCAAGTGGATGGACAGCCTCGCCGTCGCCGACTTCAACAAGC
ACTCCCACCAAAACGAGCAAACTGTCGCCGCCATGCTCCAGCTCGCAAAG
GCCTACCACAAGACCGTCCAGGAAGAGCAGAAGCTCACCTCGGAACAGCT
CGTCATTGCAAGGGTTGGCAAGCGCGACGCCAAGAAGCACCTTGGCGCCG
ACGTTGCCCAGCTCATGGCTGAGAACATTAACCAGTGCCTGGGCACTATG
TTGGATACTGTCATATTTCGTCAAGAGGTTGCCACCACAGATTAA
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protein sequence of Gvermi8001.t1

>Gvermi8001.t1 ID=Gvermi8001.t1|Name=Gvermi8001.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=315bp
MDRLQRMFTQSQGAMAADAPVWDTAETVYISSLALLKMLKHGRAGVPMEV
MGLMLGDFVDDYTVKVIDVFAMPQSGTGVSVEAVDPVFQTKMLDMLKQTG
RPEVVVGWYHSHPSFGCWLSGVDINTQQSFEQLNPRAIAVVIDPIQSVKG
KVVIDAFRLIIPQMNMLGQEPRQTTSNVGHLHKPSIQALIHGLNRQYYSI
AIAYKKNHLEQEMLLNLHKSKWMDSLAVADFNKHSHQNEQTVAAMLQLAK
AYHKTVQEEQKLTSEQLVIARVGKRDAKKHLGADVAQLMAENINQCLGTM
LDTVIFRQEVATTD*
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mRNA from alignment at ScGOVlb_24226:603141..604085+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8001.t1 ID=Gvermi8001.t1|Name=Gvermi8001.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=945bp|location=Sequence derived from alignment at ScGOVlb_24226:603141..604085+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATCGCCTGCAGAGAATGTTCACGCAGAGCCAGGGCGCCATGGCCGC
CGACGCCCCCGTGTGGGACACCGCCGAGACCGTGTACATCTCGTCGCTCG
CCCTGCTCAAGATGCTCAAGCACGGCCGCGCCGGCGTGCCCATGGAGGTC
ATGGGCCTCATGCTCGGCGACTTTGTCGACGACTACACCGTCAAGGTCAT
CGACGTCTTCGCCATGCCGCAGAGCGGCACTGGTGTCTCCGTCGAGGCCG
TCGACCCCGTCTTCCAGACCAAGATGCTCGACATGCTCAAGCAGACCGGC
CGCCCAGAGGTTGTCGTCGGTTGGTACCACTCGCATCCCAGCTTCGGCTG
TTGGCTCTCCGGCGTCGACATCAACACTCAGCAGAGCTTCGAGCAGCTCA
ACCCGCGCGCCATTGCCGTCGTCATCGACCCCATCCAGTCTGTCAAGGGC
AAAGTCGTCATCGACGCCTTCCGCCTCATCATCCCGCAGATGAACATGCT
CGGCCAGGAACCACGCCAAACCACTTCCAACGTCGGCCACCTCCACAAGC
CCTCCATCCAGGCCCTCATCCACGGCCTCAACCGCCAGTACTATTCCATC
GCCATTGCCTACAAGAAAAATCACCTCGAGCAAGAAATGCTCCTCAACCT
CCACAAGAGCAAGTGGATGGACAGCCTCGCCGTCGCCGACTTCAACAAGC
ACTCCCACCAAAACGAGCAAACTGTCGCCGCCATGCTCCAGCTCGCAAAG
GCCTACCACAAGACCGTCCAGGAAGAGCAGAAGCTCACCTCGGAACAGCT
CGTCATTGCAAGGGTTGGCAAGCGCGACGCCAAGAAGCACCTTGGCGCCG
ACGTTGCCCAGCTCATGGCTGAGAACATTAACCAGTGCCTGGGCACTATG
TTGGATACTGTCATATTTCGTCAAGAGGTTGCCACCACAGATTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:603141..604085+

>Gvermi8001.t1 ID=Gvermi8001.t1|Name=Gvermi8001.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=945bp|location=Sequence derived from alignment at ScGOVlb_24226:603141..604085+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATCGCCTGCAGAGAATGTTCACGCAGAGCCAGGGCGCCATGGCCGC
CGACGCCCCCGTGTGGGACACCGCCGAGACCGTGTACATCTCGTCGCTCG
CCCTGCTCAAGATGCTCAAGCACGGCCGCGCCGGCGTGCCCATGGAGGTC
ATGGGCCTCATGCTCGGCGACTTTGTCGACGACTACACCGTCAAGGTCAT
CGACGTCTTCGCCATGCCGCAGAGCGGCACTGGTGTCTCCGTCGAGGCCG
TCGACCCCGTCTTCCAGACCAAGATGCTCGACATGCTCAAGCAGACCGGC
CGCCCAGAGGTTGTCGTCGGTTGGTACCACTCGCATCCCAGCTTCGGCTG
TTGGCTCTCCGGCGTCGACATCAACACTCAGCAGAGCTTCGAGCAGCTCA
ACCCGCGCGCCATTGCCGTCGTCATCGACCCCATCCAGTCTGTCAAGGGC
AAAGTCGTCATCGACGCCTTCCGCCTCATCATCCCGCAGATGAACATGCT
CGGCCAGGAACCACGCCAAACCACTTCCAACGTCGGCCACCTCCACAAGC
CCTCCATCCAGGCCCTCATCCACGGCCTCAACCGCCAGTACTATTCCATC
GCCATTGCCTACAAGAAAAATCACCTCGAGCAAGAAATGCTCCTCAACCT
CCACAAGAGCAAGTGGATGGACAGCCTCGCCGTCGCCGACTTCAACAAGC
ACTCCCACCAAAACGAGCAAACTGTCGCCGCCATGCTCCAGCTCGCAAAG
GCCTACCACAAGACCGTCCAGGAAGAGCAGAAGCTCACCTCGGAACAGCT
CGTCATTGCAAGGGTTGGCAAGCGCGACGCCAAGAAGCACCTTGGCGCCG
ACGTTGCCCAGCTCATGGCTGAGAACATTAACCAGTGCCTGGGCACTATG
TTGGATACTGTCATATTTCGTCAAGAGGTTGCCACCACAGATTAA
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