Gvermi7989.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7989.t1
Unique NameGvermi7989.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length660
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:532426..534405 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704496.1
PFAMsFBPase,Pyrophosphatase
Max annot lvl2759|Eukaryota
KEGG rclassRC00017
KEGG koko:K01507,ko:K03841
KEGG ReactionR00762,R04780
KEGG Pathwayko00010,ko00030,ko00051,ko00190,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko04152,ko04910,map00010,map00030,map00051,map00190,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map04152,map04910
KEGG ModuleM00003,M00165,M00167,M00344
GOsGO:0003674,GO:0003824,GO:0004427,GO:0016462,GO:0016787,GO:0016817,GO:0016818
Evalue2.88e-278
EggNOG OGsCOG0158@1|root,COG0221@1|root,KOG1458@2759|Eukaryota,KOG1626@2759|Eukaryota
EC3.1.3.11,3.6.1.1
Descriptioninorganic diphosphatase activity
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7989Gvermi7989Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 532426..534405 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7989.t1.stop1Gvermi7989.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 532426..532428 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7989.t1.CDS1Gvermi7989.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 532426..534405 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7989.t1.exon1Gvermi7989.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 532426..534405 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7989.t1.start1Gvermi7989.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 534403..534405 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7989.t1Gvermi7989.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 532426..534405 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7989.t1 ID=Gvermi7989.t1|Name=Gvermi7989.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=660bp
MTHAADADAQPPAAHHAPDSVDQYSLVRVEDHTATHNADFQFFFHKDGHG
VINPLHDIPLYADKDAGVLNFICEIPRWTNAKLELHTKSALAPIVQDTKK
GKKRFVHNVYPYKGYIWNYGCFPQTWEDPTQVHMETGALGDGDPLDVCEI
GGKACRIGEVMQVKVLGVLGMIDEGEMDWKIIVINVNDPIANDLNDVDDL
YRVFPGLLHATFSWFRTYKIPDGKALNLFAFREQVQSAHYAKEVIEECHQ
SWNKLITGVLSHKNINCVSTTLKQSVKYTAPEKARQVVDDAIKDMEAKAE
SAPENTIGRSNSWLDMTVIPPPEFEDNAKGAAGVKPMMTIKRFCTELQRK
FPHGSNDLSLLITELGVAFKCVRAQLCDAPNANFSALSSFANSQIHASLA
SSGLCCLIFSSISKQPMALESGTDVGNYIVVYNPLCGVPGASLGSIFSVY
YRKSAPGKEGDTADLLQRPGFEQVAAGYCMYGSSTYLTFSMGYGVHIFTL
DSVSGHFVLSKQHVHTPPTGPLYSVDTSVLPNVVDGVAKFVAELESEGSG
KKFRHLNNLVANFHNVLTKGGILMLPGPQKKDLAKFLSEAAPLAFVARQA
GGRGSVGKRTLLELSAWSLEMSVPLFVGSVKDVDRLEELVLGHSIEEKNK
VDPSKNLRI*
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spliced messenger RNA

>Gvermi7989.t1 ID=Gvermi7989.t1|Name=Gvermi7989.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1980bp|location=Sequence derived from alignment at ScGOVlb_24226:532426..534405- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCACGCAGCCGACGCAGACGCGCAGCCGCCTGCCGCCCACCACGC
TCCAGATAGTGTTGATCAGTACAGCTTGGTTCGCGTTGAAGACCACACCG
CCACACACAACGCCGACTTTCAGTTTTTTTTTCACAAGGACGGACACGGC
GTCATCAACCCCCTTCATGACATCCCTTTGTACGCTGACAAGGACGCGGG
CGTGCTCAACTTTATCTGCGAGATTCCGCGCTGGACCAATGCCAAACTCG
AGTTGCACACTAAGAGTGCCCTGGCACCCATAGTGCAGGACACTAAAAAG
GGCAAGAAGCGATTCGTGCACAATGTTTATCCATACAAGGGCTATATCTG
GAACTACGGCTGCTTCCCACAGACCTGGGAGGATCCAACCCAGGTACACA
TGGAAACCGGCGCCCTTGGCGACGGCGATCCTCTGGATGTTTGTGAAATT
GGAGGCAAGGCCTGTCGTATCGGCGAGGTCATGCAGGTCAAGGTCTTAGG
CGTGCTCGGAATGATTGATGAAGGCGAAATGGACTGGAAGATCATAGTCA
TCAATGTCAATGACCCTATTGCGAACGATCTCAACGATGTTGACGATTTG
TACCGCGTCTTCCCTGGCCTTTTGCATGCCACCTTTTCGTGGTTCCGCAC
TTATAAAATCCCGGACGGGAAGGCACTCAACTTGTTTGCTTTCCGTGAGC
AGGTGCAGAGCGCCCATTATGCCAAAGAGGTCATAGAAGAATGCCATCAG
AGTTGGAACAAACTTATCACTGGCGTGTTGTCGCACAAGAATATTAACTG
TGTAAGCACCACTCTGAAGCAGTCTGTCAAGTACACTGCGCCAGAGAAGG
CGCGCCAGGTTGTTGACGATGCCATCAAGGACATGGAGGCGAAGGCCGAG
TCAGCCCCGGAGAATACCATTGGCCGCTCCAACTCATGGCTTGATATGAC
TGTTATCCCACCGCCCGAGTTTGAGGACAACGCCAAGGGTGCAGCTGGTG
TGAAGCCTATGATGACCATTAAGAGGTTCTGTACCGAATTGCAGCGAAAA
TTCCCACACGGATCTAACGATCTTAGCCTTTTGATTACCGAGCTTGGCGT
TGCTTTCAAATGTGTCAGGGCGCAGCTTTGTGATGCGCCCAACGCCAACT
TTTCGGCGTTGTCGTCATTTGCCAATTCTCAGATCCATGCTTCGCTCGCG
TCTTCCGGACTATGTTGTCTAATCTTCAGCTCGATCTCGAAACAGCCTAT
GGCGCTAGAATCCGGTACTGATGTCGGCAACTATATAGTGGTGTATAACC
CATTGTGTGGCGTTCCGGGAGCCTCACTTGGTTCGATTTTCTCTGTATAT
TACCGGAAGTCTGCCCCGGGGAAGGAAGGCGACACTGCGGATCTTTTGCA
ACGGCCAGGTTTTGAGCAGGTAGCCGCCGGCTACTGTATGTACGGATCTT
CGACTTATCTCACTTTCAGTATGGGATATGGAGTTCATATATTTACTTTG
GACTCTGTGTCGGGCCATTTTGTGCTTTCCAAGCAGCATGTGCATACGCC
TCCTACAGGGCCTCTTTACTCAGTTGATACGTCTGTGTTGCCCAACGTTG
TCGACGGCGTTGCCAAGTTTGTAGCGGAGCTGGAGAGCGAGGGCAGCGGG
AAGAAGTTTAGGCATTTGAACAATCTTGTTGCCAACTTTCACAACGTGCT
AACAAAGGGTGGTATTCTCATGTTGCCTGGACCGCAGAAAAAGGATTTGG
CCAAATTTTTGTCGGAGGCGGCACCCCTGGCCTTCGTGGCGCGACAAGCA
GGCGGGAGAGGGAGCGTTGGGAAGCGAACGCTCCTGGAACTGTCAGCGTG
GAGCCTGGAAATGAGCGTACCATTGTTCGTCGGTTCAGTGAAGGATGTGG
ATCGTTTGGAAGAACTTGTGCTCGGACACTCTATTGAGGAGAAGAATAAG
GTTGATCCTAGCAAAAACCTAAGGATCTGA
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protein sequence of Gvermi7989.t1

>Gvermi7989.t1 ID=Gvermi7989.t1|Name=Gvermi7989.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=660bp
MTHAADADAQPPAAHHAPDSVDQYSLVRVEDHTATHNADFQFFFHKDGHG
VINPLHDIPLYADKDAGVLNFICEIPRWTNAKLELHTKSALAPIVQDTKK
GKKRFVHNVYPYKGYIWNYGCFPQTWEDPTQVHMETGALGDGDPLDVCEI
GGKACRIGEVMQVKVLGVLGMIDEGEMDWKIIVINVNDPIANDLNDVDDL
YRVFPGLLHATFSWFRTYKIPDGKALNLFAFREQVQSAHYAKEVIEECHQ
SWNKLITGVLSHKNINCVSTTLKQSVKYTAPEKARQVVDDAIKDMEAKAE
SAPENTIGRSNSWLDMTVIPPPEFEDNAKGAAGVKPMMTIKRFCTELQRK
FPHGSNDLSLLITELGVAFKCVRAQLCDAPNANFSALSSFANSQIHASLA
SSGLCCLIFSSISKQPMALESGTDVGNYIVVYNPLCGVPGASLGSIFSVY
YRKSAPGKEGDTADLLQRPGFEQVAAGYCMYGSSTYLTFSMGYGVHIFTL
DSVSGHFVLSKQHVHTPPTGPLYSVDTSVLPNVVDGVAKFVAELESEGSG
KKFRHLNNLVANFHNVLTKGGILMLPGPQKKDLAKFLSEAAPLAFVARQA
GGRGSVGKRTLLELSAWSLEMSVPLFVGSVKDVDRLEELVLGHSIEEKNK
VDPSKNLRI*
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mRNA from alignment at ScGOVlb_24226:532426..534405-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7989.t1 ID=Gvermi7989.t1|Name=Gvermi7989.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1980bp|location=Sequence derived from alignment at ScGOVlb_24226:532426..534405- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACGCACGCAGCCGACGCAGACGCGCAGCCGCCTGCCGCCCACCACGC
TCCAGATAGTGTTGATCAGTACAGCTTGGTTCGCGTTGAAGACCACACCG
CCACACACAACGCCGACTTTCAGTTTTTTTTTCACAAGGACGGACACGGC
GTCATCAACCCCCTTCATGACATCCCTTTGTACGCTGACAAGGACGCGGG
CGTGCTCAACTTTATCTGCGAGATTCCGCGCTGGACCAATGCCAAACTCG
AGTTGCACACTAAGAGTGCCCTGGCACCCATAGTGCAGGACACTAAAAAG
GGCAAGAAGCGATTCGTGCACAATGTTTATCCATACAAGGGCTATATCTG
GAACTACGGCTGCTTCCCACAGACCTGGGAGGATCCAACCCAGGTACACA
TGGAAACCGGCGCCCTTGGCGACGGCGATCCTCTGGATGTTTGTGAAATT
GGAGGCAAGGCCTGTCGTATCGGCGAGGTCATGCAGGTCAAGGTCTTAGG
CGTGCTCGGAATGATTGATGAAGGCGAAATGGACTGGAAGATCATAGTCA
TCAATGTCAATGACCCTATTGCGAACGATCTCAACGATGTTGACGATTTG
TACCGCGTCTTCCCTGGCCTTTTGCATGCCACCTTTTCGTGGTTCCGCAC
TTATAAAATCCCGGACGGGAAGGCACTCAACTTGTTTGCTTTCCGTGAGC
AGGTGCAGAGCGCCCATTATGCCAAAGAGGTCATAGAAGAATGCCATCAG
AGTTGGAACAAACTTATCACTGGCGTGTTGTCGCACAAGAATATTAACTG
TGTAAGCACCACTCTGAAGCAGTCTGTCAAGTACACTGCGCCAGAGAAGG
CGCGCCAGGTTGTTGACGATGCCATCAAGGACATGGAGGCGAAGGCCGAG
TCAGCCCCGGAGAATACCATTGGCCGCTCCAACTCATGGCTTGATATGAC
TGTTATCCCACCGCCCGAGTTTGAGGACAACGCCAAGGGTGCAGCTGGTG
TGAAGCCTATGATGACCATTAAGAGGTTCTGTACCGAATTGCAGCGAAAA
TTCCCACACGGATCTAACGATCTTAGCCTTTTGATTACCGAGCTTGGCGT
TGCTTTCAAATGTGTCAGGGCGCAGCTTTGTGATGCGCCCAACGCCAACT
TTTCGGCGTTGTCGTCATTTGCCAATTCTCAGATCCATGCTTCGCTCGCG
TCTTCCGGACTATGTTGTCTAATCTTCAGCTCGATCTCGAAACAGCCTAT
GGCGCTAGAATCCGGTACTGATGTCGGCAACTATATAGTGGTGTATAACC
CATTGTGTGGCGTTCCGGGAGCCTCACTTGGTTCGATTTTCTCTGTATAT
TACCGGAAGTCTGCCCCGGGGAAGGAAGGCGACACTGCGGATCTTTTGCA
ACGGCCAGGTTTTGAGCAGGTAGCCGCCGGCTACTGTATGTACGGATCTT
CGACTTATCTCACTTTCAGTATGGGATATGGAGTTCATATATTTACTTTG
GACTCTGTGTCGGGCCATTTTGTGCTTTCCAAGCAGCATGTGCATACGCC
TCCTACAGGGCCTCTTTACTCAGTTGATACGTCTGTGTTGCCCAACGTTG
TCGACGGCGTTGCCAAGTTTGTAGCGGAGCTGGAGAGCGAGGGCAGCGGG
AAGAAGTTTAGGCATTTGAACAATCTTGTTGCCAACTTTCACAACGTGCT
AACAAAGGGTGGTATTCTCATGTTGCCTGGACCGCAGAAAAAGGATTTGG
CCAAATTTTTGTCGGAGGCGGCACCCCTGGCCTTCGTGGCGCGACAAGCA
GGCGGGAGAGGGAGCGTTGGGAAGCGAACGCTCCTGGAACTGTCAGCGTG
GAGCCTGGAAATGAGCGTACCATTGTTCGTCGGTTCAGTGAAGGATGTGG
ATCGTTTGGAAGAACTTGTGCTCGGACACTCTATTGAGGAGAAGAATAAG
GTTGATCCTAGCAAAAACCTAAGGATCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:532426..534405-

>Gvermi7989.t1 ID=Gvermi7989.t1|Name=Gvermi7989.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1980bp|location=Sequence derived from alignment at ScGOVlb_24226:532426..534405- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACGCACGCAGCCGACGCAGACGCGCAGCCGCCTGCCGCCCACCACGC
TCCAGATAGTGTTGATCAGTACAGCTTGGTTCGCGTTGAAGACCACACCG
CCACACACAACGCCGACTTTCAGTTTTTTTTTCACAAGGACGGACACGGC
GTCATCAACCCCCTTCATGACATCCCTTTGTACGCTGACAAGGACGCGGG
CGTGCTCAACTTTATCTGCGAGATTCCGCGCTGGACCAATGCCAAACTCG
AGTTGCACACTAAGAGTGCCCTGGCACCCATAGTGCAGGACACTAAAAAG
GGCAAGAAGCGATTCGTGCACAATGTTTATCCATACAAGGGCTATATCTG
GAACTACGGCTGCTTCCCACAGACCTGGGAGGATCCAACCCAGGTACACA
TGGAAACCGGCGCCCTTGGCGACGGCGATCCTCTGGATGTTTGTGAAATT
GGAGGCAAGGCCTGTCGTATCGGCGAGGTCATGCAGGTCAAGGTCTTAGG
CGTGCTCGGAATGATTGATGAAGGCGAAATGGACTGGAAGATCATAGTCA
TCAATGTCAATGACCCTATTGCGAACGATCTCAACGATGTTGACGATTTG
TACCGCGTCTTCCCTGGCCTTTTGCATGCCACCTTTTCGTGGTTCCGCAC
TTATAAAATCCCGGACGGGAAGGCACTCAACTTGTTTGCTTTCCGTGAGC
AGGTGCAGAGCGCCCATTATGCCAAAGAGGTCATAGAAGAATGCCATCAG
AGTTGGAACAAACTTATCACTGGCGTGTTGTCGCACAAGAATATTAACTG
TGTAAGCACCACTCTGAAGCAGTCTGTCAAGTACACTGCGCCAGAGAAGG
CGCGCCAGGTTGTTGACGATGCCATCAAGGACATGGAGGCGAAGGCCGAG
TCAGCCCCGGAGAATACCATTGGCCGCTCCAACTCATGGCTTGATATGAC
TGTTATCCCACCGCCCGAGTTTGAGGACAACGCCAAGGGTGCAGCTGGTG
TGAAGCCTATGATGACCATTAAGAGGTTCTGTACCGAATTGCAGCGAAAA
TTCCCACACGGATCTAACGATCTTAGCCTTTTGATTACCGAGCTTGGCGT
TGCTTTCAAATGTGTCAGGGCGCAGCTTTGTGATGCGCCCAACGCCAACT
TTTCGGCGTTGTCGTCATTTGCCAATTCTCAGATCCATGCTTCGCTCGCG
TCTTCCGGACTATGTTGTCTAATCTTCAGCTCGATCTCGAAACAGCCTAT
GGCGCTAGAATCCGGTACTGATGTCGGCAACTATATAGTGGTGTATAACC
CATTGTGTGGCGTTCCGGGAGCCTCACTTGGTTCGATTTTCTCTGTATAT
TACCGGAAGTCTGCCCCGGGGAAGGAAGGCGACACTGCGGATCTTTTGCA
ACGGCCAGGTTTTGAGCAGGTAGCCGCCGGCTACTGTATGTACGGATCTT
CGACTTATCTCACTTTCAGTATGGGATATGGAGTTCATATATTTACTTTG
GACTCTGTGTCGGGCCATTTTGTGCTTTCCAAGCAGCATGTGCATACGCC
TCCTACAGGGCCTCTTTACTCAGTTGATACGTCTGTGTTGCCCAACGTTG
TCGACGGCGTTGCCAAGTTTGTAGCGGAGCTGGAGAGCGAGGGCAGCGGG
AAGAAGTTTAGGCATTTGAACAATCTTGTTGCCAACTTTCACAACGTGCT
AACAAAGGGTGGTATTCTCATGTTGCCTGGACCGCAGAAAAAGGATTTGG
CCAAATTTTTGTCGGAGGCGGCACCCCTGGCCTTCGTGGCGCGACAAGCA
GGCGGGAGAGGGAGCGTTGGGAAGCGAACGCTCCTGGAACTGTCAGCGTG
GAGCCTGGAAATGAGCGTACCATTGTTCGTCGGTTCAGTGAAGGATGTGG
ATCGTTTGGAAGAACTTGTGCTCGGACACTCTATTGAGGAGAAGAATAAG
GTTGATCCTAGCAAAAACCTAAGGATCTGA
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