Gvermi7985.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7985.t1
Unique NameGvermi7985.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length172
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:484419..484934 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX44415
PFAMsTIC20
Max annot lvl2759|Eukaryota
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0009507,GO:0009526,GO:0009528,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009706,GO:0009941,GO:0016020,GO:0019866,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042170,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
Evalue2.35e-37
EggNOG OGs2BYWW@1|root,2QUSD@2759|Eukaryota
Descriptionprotein transport
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7985Gvermi7985Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 484419..484934 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7985.t1.stop1Gvermi7985.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 484419..484421 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7985.t1.CDS1Gvermi7985.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 484419..484934 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7985.t1.exon1Gvermi7985.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 484419..484934 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7985.t1.start1Gvermi7985.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 484932..484934 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7985.t1Gvermi7985.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 484419..484934 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7985.t1 ID=Gvermi7985.t1|Name=Gvermi7985.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=172bp
MGWSGGGGGGGGGGGVPPADRALSSLPYLIPLLDSLTFGSFVFRRVPALA
NVLLLPLLPLYNVYRGVPLLAFGVFLALFVLVVRNVNVSRFVRFNTYQAL
ILDIALILPQLFQSARLGTAVPLPVVELCSTAVFYAVVMAVSYAVVMNVR
GKLPDEIPAVSNSVKQQLGPY*
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spliced messenger RNA

>Gvermi7985.t1 ID=Gvermi7985.t1|Name=Gvermi7985.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=516bp|location=Sequence derived from alignment at ScGOVlb_24226:484419..484934- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCTGGTCCGGCGGCGGCGGCGGCGGCGGCGGAGGCGGCGGCGTGCC
GCCCGCGGATCGGGCGCTGTCGTCGCTGCCGTACCTCATCCCGCTGCTGG
ACTCGCTGACGTTCGGCAGCTTCGTGTTCCGGCGCGTGCCGGCGCTGGCC
AACGTGCTGCTGCTGCCGCTGCTGCCGCTCTACAACGTGTACCGCGGCGT
GCCGCTGCTGGCATTCGGCGTGTTCCTGGCGCTGTTCGTGCTCGTGGTGC
GCAACGTCAACGTGTCGCGCTTCGTGCGCTTCAACACGTACCAGGCGCTC
ATCCTGGACATTGCGCTCATCCTGCCGCAGCTGTTCCAGAGCGCGCGGCT
GGGCACCGCCGTGCCGCTGCCCGTCGTCGAGCTGTGCTCCACGGCCGTCT
TCTACGCCGTCGTCATGGCCGTGTCGTACGCCGTCGTCATGAACGTGCGC
GGCAAGCTGCCCGACGAGATCCCCGCCGTCAGCAACTCGGTCAAGCAGCA
GCTGGGGCCCTACTGA
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protein sequence of Gvermi7985.t1

>Gvermi7985.t1 ID=Gvermi7985.t1|Name=Gvermi7985.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=172bp
MGWSGGGGGGGGGGGVPPADRALSSLPYLIPLLDSLTFGSFVFRRVPALA
NVLLLPLLPLYNVYRGVPLLAFGVFLALFVLVVRNVNVSRFVRFNTYQAL
ILDIALILPQLFQSARLGTAVPLPVVELCSTAVFYAVVMAVSYAVVMNVR
GKLPDEIPAVSNSVKQQLGPY*
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mRNA from alignment at ScGOVlb_24226:484419..484934-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7985.t1 ID=Gvermi7985.t1|Name=Gvermi7985.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=516bp|location=Sequence derived from alignment at ScGOVlb_24226:484419..484934- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCTGGTCCGGCGGCGGCGGCGGCGGCGGCGGAGGCGGCGGCGTGCC
GCCCGCGGATCGGGCGCTGTCGTCGCTGCCGTACCTCATCCCGCTGCTGG
ACTCGCTGACGTTCGGCAGCTTCGTGTTCCGGCGCGTGCCGGCGCTGGCC
AACGTGCTGCTGCTGCCGCTGCTGCCGCTCTACAACGTGTACCGCGGCGT
GCCGCTGCTGGCATTCGGCGTGTTCCTGGCGCTGTTCGTGCTCGTGGTGC
GCAACGTCAACGTGTCGCGCTTCGTGCGCTTCAACACGTACCAGGCGCTC
ATCCTGGACATTGCGCTCATCCTGCCGCAGCTGTTCCAGAGCGCGCGGCT
GGGCACCGCCGTGCCGCTGCCCGTCGTCGAGCTGTGCTCCACGGCCGTCT
TCTACGCCGTCGTCATGGCCGTGTCGTACGCCGTCGTCATGAACGTGCGC
GGCAAGCTGCCCGACGAGATCCCCGCCGTCAGCAACTCGGTCAAGCAGCA
GCTGGGGCCCTACTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:484419..484934-

>Gvermi7985.t1 ID=Gvermi7985.t1|Name=Gvermi7985.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=516bp|location=Sequence derived from alignment at ScGOVlb_24226:484419..484934- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCTGGTCCGGCGGCGGCGGCGGCGGCGGCGGAGGCGGCGGCGTGCC
GCCCGCGGATCGGGCGCTGTCGTCGCTGCCGTACCTCATCCCGCTGCTGG
ACTCGCTGACGTTCGGCAGCTTCGTGTTCCGGCGCGTGCCGGCGCTGGCC
AACGTGCTGCTGCTGCCGCTGCTGCCGCTCTACAACGTGTACCGCGGCGT
GCCGCTGCTGGCATTCGGCGTGTTCCTGGCGCTGTTCGTGCTCGTGGTGC
GCAACGTCAACGTGTCGCGCTTCGTGCGCTTCAACACGTACCAGGCGCTC
ATCCTGGACATTGCGCTCATCCTGCCGCAGCTGTTCCAGAGCGCGCGGCT
GGGCACCGCCGTGCCGCTGCCCGTCGTCGAGCTGTGCTCCACGGCCGTCT
TCTACGCCGTCGTCATGGCCGTGTCGTACGCCGTCGTCATGAACGTGCGC
GGCAAGCTGCCCGACGAGATCCCCGCCGTCAGCAACTCGGTCAAGCAGCA
GCTGGGGCCCTACTGA
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