Gvermi7982.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7982.t1
Unique NameGvermi7982.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length140
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:477009..477428 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704325.1
PFAMsClpS
Max annot lvl2759|Eukaryota
Evalue1.34e-29
EggNOG OGs2CHM4@1|root,2SC6E@2759|Eukaryota
DescriptionATP-dependent Clp protease adaptor protein ClpS
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7982Gvermi7982Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 477009..477428 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7982.t1.start1Gvermi7982.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 477009..477011 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7982.t1.CDS1Gvermi7982.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 477009..477428 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7982.t1.exon1Gvermi7982.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 477009..477428 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7982.t1.stop1Gvermi7982.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 477426..477428 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7982.t1Gvermi7982.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 477009..477428 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7982.t1 ID=Gvermi7982.t1|Name=Gvermi7982.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=140bp
MRRRGARLARMQLGAPSTQIGRPKTQIKKDVGRVTAQPSQPEADTERGSA
KARPRRKTLADQVPMYKVILLGDEEYVEAHVVTQLQKTVQLEKKEATRIF
WEAQGSGSSIVCVVCEEHAEFYAQQLKRQEIFVIIEKDE*
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spliced messenger RNA

>Gvermi7982.t1 ID=Gvermi7982.t1|Name=Gvermi7982.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=420bp|location=Sequence derived from alignment at ScGOVlb_24226:477009..477428+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
atgcgccgccgcggcgcgcggctggcgcgcatgcagctcggcgcgccgTC
CACGCAAATCGGCCGCCCCAAGACGCAGATCAAGAAGGACGTCGGGCGCG
TGACTGCGCAGCCCTCGCAGCCGGAGGCCGACACCGAGCGGGGCTCGGCC
AAGGCGCGGCCGCGCCGCAAGACGCTGGCCGATCAGGTGCCCATGTACAA
GGTGATTCTGCTCGGCGACGAGGAGTACGTTGAGGCGCACGTCGTGACGC
AGCTGCAGAAGACCGTGCAGCTGGAGAAAAAGGAGGCCACGCGCATTTTC
TGGGAGGCGCAGGGTTCTGGCAGCAGCATTGTGTGCGTCGTCTGCGAGGA
GCACGCCGAGTTCTACGCGCAGCAACTCAAGCGGCAGGAGATTTTTGTCA
TCATAGAGAAGGACGAGTAG
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protein sequence of Gvermi7982.t1

>Gvermi7982.t1 ID=Gvermi7982.t1|Name=Gvermi7982.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=140bp
MRRRGARLARMQLGAPSTQIGRPKTQIKKDVGRVTAQPSQPEADTERGSA
KARPRRKTLADQVPMYKVILLGDEEYVEAHVVTQLQKTVQLEKKEATRIF
WEAQGSGSSIVCVVCEEHAEFYAQQLKRQEIFVIIEKDE*
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mRNA from alignment at ScGOVlb_24226:477009..477428+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7982.t1 ID=Gvermi7982.t1|Name=Gvermi7982.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=420bp|location=Sequence derived from alignment at ScGOVlb_24226:477009..477428+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atgcgccgccgcggcgcgcggctggcgcgcatgcagctcggcgcgccgTC
CACGCAAATCGGCCGCCCCAAGACGCAGATCAAGAAGGACGTCGGGCGCG
TGACTGCGCAGCCCTCGCAGCCGGAGGCCGACACCGAGCGGGGCTCGGCC
AAGGCGCGGCCGCGCCGCAAGACGCTGGCCGATCAGGTGCCCATGTACAA
GGTGATTCTGCTCGGCGACGAGGAGTACGTTGAGGCGCACGTCGTGACGC
AGCTGCAGAAGACCGTGCAGCTGGAGAAAAAGGAGGCCACGCGCATTTTC
TGGGAGGCGCAGGGTTCTGGCAGCAGCATTGTGTGCGTCGTCTGCGAGGA
GCACGCCGAGTTCTACGCGCAGCAACTCAAGCGGCAGGAGATTTTTGTCA
TCATAGAGAAGGACGAGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_24226:477009..477428+

>Gvermi7982.t1 ID=Gvermi7982.t1|Name=Gvermi7982.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=420bp|location=Sequence derived from alignment at ScGOVlb_24226:477009..477428+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atgcgccgccgcggcgcgcggctggcgcgcatgcagctcggcgcgccgTC
CACGCAAATCGGCCGCCCCAAGACGCAGATCAAGAAGGACGTCGGGCGCG
TGACTGCGCAGCCCTCGCAGCCGGAGGCCGACACCGAGCGGGGCTCGGCC
AAGGCGCGGCCGCGCCGCAAGACGCTGGCCGATCAGGTGCCCATGTACAA
GGTGATTCTGCTCGGCGACGAGGAGTACGTTGAGGCGCACGTCGTGACGC
AGCTGCAGAAGACCGTGCAGCTGGAGAAAAAGGAGGCCACGCGCATTTTC
TGGGAGGCGCAGGGTTCTGGCAGCAGCATTGTGTGCGTCGTCTGCGAGGA
GCACGCCGAGTTCTACGCGCAGCAACTCAAGCGGCAGGAGATTTTTGTCA
TCATAGAGAAGGACGAGTAG
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