Gvermi7981.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7981.t1
Unique NameGvermi7981.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length230
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:475525..476214 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706119.1
Preferred nameMFAP1
PFAMsMFAP1
Max annot lvl2759|Eukaryota
KEGG koko:K13110
GOsGO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0001527,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007346,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010389,GO:0010467,GO:0010468,GO:0010564,GO:0016070,GO:0016071,GO:0019219,GO:0019222,GO:0031012,GO:0031323,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043484,GO:0044237,GO:0044238,GO:0044420,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0048024,GO:0050684,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0051726,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0099080,GO:0099081,GO:0099512,GO:1901360,GO:1901987,GO:1901990,GO:1902749,GO:1903311,GO:1990904
Evalue5.34e-24
EggNOG OGsKOG1425@1|root,KOG1425@2759|Eukaryota
DescriptionRNA splicing
COG categoryS
BRITEko00000,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7981Gvermi7981Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 475525..476214 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7981.t1.stop1Gvermi7981.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 475525..475527 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7981.t1.CDS1Gvermi7981.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 475525..476214 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7981.t1.exon1Gvermi7981.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 475525..476214 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7981.t1.start1Gvermi7981.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 476212..476214 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7981.t1Gvermi7981.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 475525..476214 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7981.t1 ID=Gvermi7981.t1|Name=Gvermi7981.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=230bp
LSPSFRPQFVRPSAAEAQQQQQLRAESEENRFRRKRDHARQLVTEMLNEE
DRQVDDPSKQLQLPDDTDYEHERDVEFALWRVRELRRIKRDREEQIAWQN
RTSTTAERRQHDEQQTHSPSQQPVVGEARANNSFLQRSYKLGPFFMEKDE
NGRFVEDIYNRDYSQPTEGENYDRTLLPKPLQVRHGQLGRAGRSKFTHLA
AEDTAKQFINEIKADRDLEKAINDQKPTR*
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spliced messenger RNA

>Gvermi7981.t1 ID=Gvermi7981.t1|Name=Gvermi7981.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=690bp|location=Sequence derived from alignment at ScGOVlb_24226:475525..476214- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGTCGCCGTCGTTCCGACCGCAGTTTGTCAGGCCTTCTGCCGCGGAGGC
GCAGCAACAGCAGCAGCTGCGCGCCGAAAGCGAGGAGAACCGTTTTCGTC
GCAAGCGCGACCACGCTCGTCAGCTCGTCACCGAGATGCTCAACGAGGAG
GACCGCCAGGTCGACGACCCGTCCAAGCAGCTGCAGCTCCCGGACGACAC
CGACTACGAGCATGAGCGCGATGTCGAGTTTGCCCTGTGGAGAGTTCGCG
AGTTGAGGAGAATCAAACGCGATCGCGAGGAGCAGATAGCGTGGCAAAAT
CGCACAAGCACAACCGCGGAACGCAGGCAACACGACGAGCAACAAACACA
TTCACCATCTCAACAGCCCGTCGTTGGCGAAGCGCGCGCAAACAACTCCT
TCCTGCAGAGGTCTTACAAGCTGGGTCCGTTTTTCATGGAAAAGGATGAA
AACGGTCGCTTTGTTGAGGACATTTACAACAGGGACTACAGTCAACCAAC
TGAAGGGGAGAACTACGACAGAACACTGCTACCAAAACCGTTGCAAGTAA
GACACGGCCAACTGGGTCGCGCCGGAAGAAGCAAGTTCACCCATCTCGCT
GCAGAGGACACCGCCAAACAGTTTATCAACGAGATCAAAGCCGACCGCGA
CCTAGAAAAGGCGATAAACGATCAAAAACCAACCAGGTGA
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protein sequence of Gvermi7981.t1

>Gvermi7981.t1 ID=Gvermi7981.t1|Name=Gvermi7981.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=230bp
LSPSFRPQFVRPSAAEAQQQQQLRAESEENRFRRKRDHARQLVTEMLNEE
DRQVDDPSKQLQLPDDTDYEHERDVEFALWRVRELRRIKRDREEQIAWQN
RTSTTAERRQHDEQQTHSPSQQPVVGEARANNSFLQRSYKLGPFFMEKDE
NGRFVEDIYNRDYSQPTEGENYDRTLLPKPLQVRHGQLGRAGRSKFTHLA
AEDTAKQFINEIKADRDLEKAINDQKPTR*
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mRNA from alignment at ScGOVlb_24226:475525..476214-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7981.t1 ID=Gvermi7981.t1|Name=Gvermi7981.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=690bp|location=Sequence derived from alignment at ScGOVlb_24226:475525..476214- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGTCGCCGTCGTTCCGACCGCAGTTTGTCAGGCCTTCTGCCGCGGAGGC
GCAGCAACAGCAGCAGCTGCGCGCCGAAAGCGAGGAGAACCGTTTTCGTC
GCAAGCGCGACCACGCTCGTCAGCTCGTCACCGAGATGCTCAACGAGGAG
GACCGCCAGGTCGACGACCCGTCCAAGCAGCTGCAGCTCCCGGACGACAC
CGACTACGAGCATGAGCGCGATGTCGAGTTTGCCCTGTGGAGAGTTCGCG
AGTTGAGGAGAATCAAACGCGATCGCGAGGAGCAGATAGCGTGGCAAAAT
CGCACAAGCACAACCGCGGAACGCAGGCAACACGACGAGCAACAAACACA
TTCACCATCTCAACAGCCCGTCGTTGGCGAAGCGCGCGCAAACAACTCCT
TCCTGCAGAGGTCTTACAAGCTGGGTCCGTTTTTCATGGAAAAGGATGAA
AACGGTCGCTTTGTTGAGGACATTTACAACAGGGACTACAGTCAACCAAC
TGAAGGGGAGAACTACGACAGAACACTGCTACCAAAACCGTTGCAAGTAA
GACACGGCCAACTGGGTCGCGCCGGAAGAAGCAAGTTCACCCATCTCGCT
GCAGAGGACACCGCCAAACAGTTTATCAACGAGATCAAAGCCGACCGCGA
CCTAGAAAAGGCGATAAACGATCAAAAACCAACCAGGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:475525..476214-

>Gvermi7981.t1 ID=Gvermi7981.t1|Name=Gvermi7981.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=690bp|location=Sequence derived from alignment at ScGOVlb_24226:475525..476214- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGTCGCCGTCGTTCCGACCGCAGTTTGTCAGGCCTTCTGCCGCGGAGGC
GCAGCAACAGCAGCAGCTGCGCGCCGAAAGCGAGGAGAACCGTTTTCGTC
GCAAGCGCGACCACGCTCGTCAGCTCGTCACCGAGATGCTCAACGAGGAG
GACCGCCAGGTCGACGACCCGTCCAAGCAGCTGCAGCTCCCGGACGACAC
CGACTACGAGCATGAGCGCGATGTCGAGTTTGCCCTGTGGAGAGTTCGCG
AGTTGAGGAGAATCAAACGCGATCGCGAGGAGCAGATAGCGTGGCAAAAT
CGCACAAGCACAACCGCGGAACGCAGGCAACACGACGAGCAACAAACACA
TTCACCATCTCAACAGCCCGTCGTTGGCGAAGCGCGCGCAAACAACTCCT
TCCTGCAGAGGTCTTACAAGCTGGGTCCGTTTTTCATGGAAAAGGATGAA
AACGGTCGCTTTGTTGAGGACATTTACAACAGGGACTACAGTCAACCAAC
TGAAGGGGAGAACTACGACAGAACACTGCTACCAAAACCGTTGCAAGTAA
GACACGGCCAACTGGGTCGCGCCGGAAGAAGCAAGTTCACCCATCTCGCT
GCAGAGGACACCGCCAAACAGTTTATCAACGAGATCAAAGCCGACCGCGA
CCTAGAAAAGGCGATAAACGATCAAAAACCAACCAGGTGA
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