Gvermi7977.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7977.t1
Unique NameGvermi7977.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length336
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:421180..422187 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7977Gvermi7977Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 421180..422187 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7977.t1.start1Gvermi7977.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 421180..421182 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7977.t1.CDS1Gvermi7977.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 421180..422187 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7977.t1.exon1Gvermi7977.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 421180..422187 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7977.t1.stop1Gvermi7977.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 422185..422187 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7977.t1Gvermi7977.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 421180..422187 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7977.t1 ID=Gvermi7977.t1|Name=Gvermi7977.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=336bp
MDTAVASQPDVEHGVDGKGEMNKKSLAFLEAGAMLTIWSLLVINEGAIRL
IQANPSQGLFSGDARIKPFFPFIGGLFEVFFGLLGLFLGMGALLLRWYST
LATKVSMAVQTVFGYFVLLVFVFALPAVAAVDRVGPGFHPALSVAQNRFL
IAMGIMTSFHFCLALQGGQFLFMARLISTGSGRDFLKQQSGNKMRAVFWN
MNLALSGLWTLITGALINAEVGGGELSDPFFSAPNVGTLPGMTITAGLLM
LVWGLVGAVLAMSGGSPPALYYVGSAFVYLFAYLNYTIVQLGQINVQVAT
PLDGATALHGGLVFMVVTLGPYFVLQADRDRRGLA*
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spliced messenger RNA

>Gvermi7977.t1 ID=Gvermi7977.t1|Name=Gvermi7977.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1008bp|location=Sequence derived from alignment at ScGOVlb_24226:421180..422187+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACACTGCGGTCGCTTCCCAGCCCGACGTCGAGCACGGCGTGGACGG
AAAGGGTGAGATGAACAAGAAGTCATTGGCATTTCTTGAGGCGGGTGCCA
TGCTCACGATCTGGTCGCTGCTGGTGATCAACGAAGGCGCGATCAGACTG
ATCCAAGCGAACCCATCGCAGGGCCTGTTCAGTGGGGATGCGCGCATTAA
GCCATTCTTCCCATTCATCGGCGGGTTGTTCGAGGTATTCTTCGGACTGT
TGGGCCTTTTCCTCGGGATGGGAGCTCTGTTGTTGCGCTGGTACAGCACG
CTGGCCACCAAGGTCTCCATGGCGGTGCAGACTGTGTTTGGATACTTTGT
GCTTTTGGTGTTTGTGTTCGCGTTACCGGCTGTGGCAGCGGTGGACCGTG
TGGGTCCCGGCTTCCATCCGGCCCTATCGGTGGCGCAAAATCGTTTTTTG
ATCGCGATGGGGATTATGACATCGTTCCACTTTTGCTTGGCGCTGCAGGG
CGGTCAGTTTCTGTTCATGGCGCGACTGATCAGCACGGGTAGCGGACGCG
ACTTTCTCAAGCAGCAGTCCGGAAACAAGATGCGGGCGGTGTTCTGGAAC
ATGAACTTGGCGCTGTCGGGGCTGTGGACGCTCATCACGGGGGCGCTGAT
CAACGCCGAGGTGGGAGGCGGCGAGCTGAGCGACCCATTCTTCTCGGCGC
CGAACGTGGGCACTCTGCCCGGGATGACAATCACAGCGGGACTGCTGATG
CTGGTGTGGGGCTTGGTCGGGGCGGTTTTGGCGATGAGCGGTGGGTCGCC
ACCGGCCTTATACTACGTGGGGTCGGCGTTTGTGTACCTGTTTGCGTACC
TCAACTACACGATTGTGCAGCTAGGGCAGATCAACGTGCAAGTGGCGACC
CCCCTTGACGGCGCCACGGCGCTGCACGGCGGCCTGGTGTTCATGGTCGT
CACGCTGGGGCCATACTTTGTGCTCCAAGCTGACCGCGACAGACGGGGGC
TAGCGTAG
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protein sequence of Gvermi7977.t1

>Gvermi7977.t1 ID=Gvermi7977.t1|Name=Gvermi7977.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=336bp
MDTAVASQPDVEHGVDGKGEMNKKSLAFLEAGAMLTIWSLLVINEGAIRL
IQANPSQGLFSGDARIKPFFPFIGGLFEVFFGLLGLFLGMGALLLRWYST
LATKVSMAVQTVFGYFVLLVFVFALPAVAAVDRVGPGFHPALSVAQNRFL
IAMGIMTSFHFCLALQGGQFLFMARLISTGSGRDFLKQQSGNKMRAVFWN
MNLALSGLWTLITGALINAEVGGGELSDPFFSAPNVGTLPGMTITAGLLM
LVWGLVGAVLAMSGGSPPALYYVGSAFVYLFAYLNYTIVQLGQINVQVAT
PLDGATALHGGLVFMVVTLGPYFVLQADRDRRGLA*
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mRNA from alignment at ScGOVlb_24226:421180..422187+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7977.t1 ID=Gvermi7977.t1|Name=Gvermi7977.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1008bp|location=Sequence derived from alignment at ScGOVlb_24226:421180..422187+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACACTGCGGTCGCTTCCCAGCCCGACGTCGAGCACGGCGTGGACGG
AAAGGGTGAGATGAACAAGAAGTCATTGGCATTTCTTGAGGCGGGTGCCA
TGCTCACGATCTGGTCGCTGCTGGTGATCAACGAAGGCGCGATCAGACTG
ATCCAAGCGAACCCATCGCAGGGCCTGTTCAGTGGGGATGCGCGCATTAA
GCCATTCTTCCCATTCATCGGCGGGTTGTTCGAGGTATTCTTCGGACTGT
TGGGCCTTTTCCTCGGGATGGGAGCTCTGTTGTTGCGCTGGTACAGCACG
CTGGCCACCAAGGTCTCCATGGCGGTGCAGACTGTGTTTGGATACTTTGT
GCTTTTGGTGTTTGTGTTCGCGTTACCGGCTGTGGCAGCGGTGGACCGTG
TGGGTCCCGGCTTCCATCCGGCCCTATCGGTGGCGCAAAATCGTTTTTTG
ATCGCGATGGGGATTATGACATCGTTCCACTTTTGCTTGGCGCTGCAGGG
CGGTCAGTTTCTGTTCATGGCGCGACTGATCAGCACGGGTAGCGGACGCG
ACTTTCTCAAGCAGCAGTCCGGAAACAAGATGCGGGCGGTGTTCTGGAAC
ATGAACTTGGCGCTGTCGGGGCTGTGGACGCTCATCACGGGGGCGCTGAT
CAACGCCGAGGTGGGAGGCGGCGAGCTGAGCGACCCATTCTTCTCGGCGC
CGAACGTGGGCACTCTGCCCGGGATGACAATCACAGCGGGACTGCTGATG
CTGGTGTGGGGCTTGGTCGGGGCGGTTTTGGCGATGAGCGGTGGGTCGCC
ACCGGCCTTATACTACGTGGGGTCGGCGTTTGTGTACCTGTTTGCGTACC
TCAACTACACGATTGTGCAGCTAGGGCAGATCAACGTGCAAGTGGCGACC
CCCCTTGACGGCGCCACGGCGCTGCACGGCGGCCTGGTGTTCATGGTCGT
CACGCTGGGGCCATACTTTGTGCTCCAAGCTGACCGCGACAGACGGGGGC
TAGCGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_24226:421180..422187+

>Gvermi7977.t1 ID=Gvermi7977.t1|Name=Gvermi7977.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1008bp|location=Sequence derived from alignment at ScGOVlb_24226:421180..422187+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACACTGCGGTCGCTTCCCAGCCCGACGTCGAGCACGGCGTGGACGG
AAAGGGTGAGATGAACAAGAAGTCATTGGCATTTCTTGAGGCGGGTGCCA
TGCTCACGATCTGGTCGCTGCTGGTGATCAACGAAGGCGCGATCAGACTG
ATCCAAGCGAACCCATCGCAGGGCCTGTTCAGTGGGGATGCGCGCATTAA
GCCATTCTTCCCATTCATCGGCGGGTTGTTCGAGGTATTCTTCGGACTGT
TGGGCCTTTTCCTCGGGATGGGAGCTCTGTTGTTGCGCTGGTACAGCACG
CTGGCCACCAAGGTCTCCATGGCGGTGCAGACTGTGTTTGGATACTTTGT
GCTTTTGGTGTTTGTGTTCGCGTTACCGGCTGTGGCAGCGGTGGACCGTG
TGGGTCCCGGCTTCCATCCGGCCCTATCGGTGGCGCAAAATCGTTTTTTG
ATCGCGATGGGGATTATGACATCGTTCCACTTTTGCTTGGCGCTGCAGGG
CGGTCAGTTTCTGTTCATGGCGCGACTGATCAGCACGGGTAGCGGACGCG
ACTTTCTCAAGCAGCAGTCCGGAAACAAGATGCGGGCGGTGTTCTGGAAC
ATGAACTTGGCGCTGTCGGGGCTGTGGACGCTCATCACGGGGGCGCTGAT
CAACGCCGAGGTGGGAGGCGGCGAGCTGAGCGACCCATTCTTCTCGGCGC
CGAACGTGGGCACTCTGCCCGGGATGACAATCACAGCGGGACTGCTGATG
CTGGTGTGGGGCTTGGTCGGGGCGGTTTTGGCGATGAGCGGTGGGTCGCC
ACCGGCCTTATACTACGTGGGGTCGGCGTTTGTGTACCTGTTTGCGTACC
TCAACTACACGATTGTGCAGCTAGGGCAGATCAACGTGCAAGTGGCGACC
CCCCTTGACGGCGCCACGGCGCTGCACGGCGGCCTGGTGTTCATGGTCGT
CACGCTGGGGCCATACTTTGTGCTCCAAGCTGACCGCGACAGACGGGGGC
TAGCGTAG
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