Gvermi797.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi797.t1
Unique NameGvermi797.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length618
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:346649..348634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705950.1
Preferred nameFUN12
PFAMsGTP_EFTU,GTP_EFTU_D2,IF-2
Max annot lvl2759|Eukaryota
KEGG koko:K03243,ko:K12834
KEGG Pathwayko03013,ko03040,map03013,map03040
KEGG ModuleM00352
GOsGO:0000166,GO:0000462,GO:0001732,GO:0001882,GO:0001883,GO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010608,GO:0015935,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019222,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030490,GO:0030684,GO:0030687,GO:0031323,GO:0031326,GO:0031369,GO:0032268,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033290,GO:0034248,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0035770,GO:0036094,GO:0036464,GO:0042254,GO:0042255,GO:0042274,GO:0043021,GO:0043022,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0046483,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0070993,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000112
Evalue3.53e-11
EggNOG OGsCOG0532@1|root,KOG1144@2759|Eukaryota
Descriptiontranslation initiation factor activity
COG categoryJ
BRITEko00000,ko00001,ko00002,ko03012,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi797Gvermi797Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2952 346649..348634 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi797.t1Gvermi797.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2952 346649..348634 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi797.t1.start1Gvermi797.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2952 346649..346651 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi797.t1.CDS1Gvermi797.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 346649..348137 +
Gvermi797.t1.CDS2Gvermi797.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 348202..348354 +
Gvermi797.t1.CDS3Gvermi797.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 348423..348634 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi797.t1.exon1Gvermi797.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 346649..348137 +
Gvermi797.t1.exon2Gvermi797.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 348202..348354 +
Gvermi797.t1.exon3Gvermi797.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 348423..348634 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi797.t1.intron1Gvermi797.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_2952 348138..348201 +
Gvermi797.t1.intron2Gvermi797.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_2952 348355..348422 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi797.t1.stop1Gvermi797.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2952 348632..348634 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi797.t1 ID=Gvermi797.t1|Name=Gvermi797.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=618bp
MQDIILYLDPSTWNVLKFIILTIITTPLLEFLFQRFLNTKATYDVMRGEH
VQFGETNLGVLSLHSVYWGRRSNRFYLLLVASLVFASELIFEFSFSAQAL
DIAESREVWLPSSHAEYYNFSDSSLNGRIRWDPFQFPVLATETCMKGESE
MSRSRRSNETHEEFTSGFEYHMEDTYVIRKPYLALDNSSVLCSVSTIIGR
VSFFVPHVYLVRNSTGAEGFMALKNTSNSENLRHSLTSGTFQLYGYENFE
RVMASENVVCIPSISSSKTSLCAMYEKNTFILVRTGEIWSKRIRSNTLLS
VILNATGKPVEGMRSRSRRLRYLATVNGNALLNAFVDGQRPSDKLVSKDK
METLALLVLVVANEEGVSGLRNKRGIRSIVAGQAQTATMKRLAFVPIAIL
VSFLVSLLVVDMTFSKFIAFYAKNDVRKMWGYARAGPRADTSIQWLRERI
CEDLLHDGVFRNISSKDLSLKNVSGKLRMLPIILPGGTNHVGYDYGKMRV
KGQYVHHNEIKAAQSIRILADGVEKAVDGAQLIVVEGLFDEHEIEYVQAL
REHTYNKDPIVVGMDVMEGLLRVGTPLVVGHVAEWLDDGRVTSVELNKKQ
VPIAKKGESVAVKIQQK*
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spliced messenger RNA

>Gvermi797.t1 ID=Gvermi797.t1|Name=Gvermi797.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1854bp|location=Sequence derived from alignment at ScGOVlb_2952:346649..348634+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGATATCATTCTCTACCTAGACCCCTCCACCTGGAATGTTCTCAA
GTTTATCATTCTCACCATCATAACAACGCCTCTCCTGGAATTTCTTTTCC
AACGTTTTTTGAACACCAAAGCCACCTACGATGTAATGCGCGGTGAACAT
GTTCAGTTTGGCGAGACTAACCTTGGCGTTCTGTCCCTTCATTCCGTGTA
CTGGGGTCGGCGGAGTAACAGATTCTACTTGCTGCTGGTCGCATCGCTTG
TTTTCGCATCCGAACTCATCTTTGAATTCTCCTTTTCTGCACAAGCATTG
GACATTGCTGAGTCGCGCGAAGTTTGGCTTCCTTCGTCACACGCGGAATA
TTATAACTTTTCGGACAGTTCTCTGAACGGCCGCATACGATGGGACCCTT
TTCAGTTTCCGGTTTTGGCCACCGAGACCTGCATGAAAGGCGAGTCCGAG
ATGAGCCGATCACGACGTTCTAACGAGACACATGAAGAATTCACATCCGG
ATTTGAATATCACATGGAGGACACATATGTCATCCGGAAGCCCTATCTTG
CATTAGACAACTCTTCAGTGCTATGCAGCGTCTCTACAATTATTGGAAGA
GTGAGCTTTTTCGTTCCTCATGTCTATCTCGTACGAAATTCCACCGGGGC
TGAGGGATTTATGGCGTTGAAGAACACCTCTAACTCTGAAAACTTGCGCC
ATTCGTTAACAAGTGGTACATTTCAATTGTACGGATACGAGAATTTCGAG
CGAGTGATGGCAAGCGAAAACGTAGTTTGCATCCCGTCAATTTCGAGTTC
AAAAACCTCTCTGTGCGCCATGTATGAGAAGAATACCTTCATCCTGGTAC
GTACTGGAGAAATCTGGTCTAAGCGGATACGGAGCAATACCTTGCTTTCC
GTGATTTTGAACGCAACTGGCAAACCCGTGGAAGGCATGAGAAGCCGTTC
ACGAAGACTACGATATCTTGCCACCGTCAATGGCAATGCGCTTCTGAATG
CTTTCGTGGACGGGCAACGTCCCTCGGACAAACTGGTCAGCAAGGATAAG
ATGGAGACCCTTGCGTTGTTGGTATTGGTTGTGGCCAATGAGGAGGGCGT
TAGTGGCTTGCGGAACAAAAGGGGAATACGTTCTATTGTTGCTGGACAAG
CACAGACAGCAACTATGAAGAGACTGGCGTTCGTTCCTATTGCAATCTTG
GTATCTTTTCTGGTGTCCTTACTCGTTGTTGATATGACTTTCTCCAAATT
TATTGCTTTTTATGCAAAGAATGACGTAAGAAAAATGTGGGGTTACGCAC
GGGCAGGACCAAGGGCGGACACGTCAATTCAGTGGCTCCGAGAGCGCATT
TGTGAAGACCTCTTGCATGATGGCGTGTTCAGAAACATATCAAGCAAGGA
TTTGTCTCTCAAAAATGTCTCAGGCAAATTGAGAATGTTACCGATCATTC
TTCCTGGCGGTACCAATCACGTAGGATACGATTATGGTAAGATGAGAGTG
AAAGGACAGTATGTGCACCACAACGAAATCAAGGCAGCGCAGAGTATCAG
GATATTAGCAGATGGTGTCGAAAAGGCAGTGGATGGTGCACAACTGATAG
TTGTTGAAGGCCTATTCGATGAACATGAAATAGAATATGTACAAGCATTG
CGGGAGCACACCTACAACAAAGACCCAATCGTGGTGGGTATGGATGTGAT
GGAGGGCCTCCTGAGAGTAGGGACGCCATTGGTGGTCGGACATGTTGCCG
AATGGCTTGATGATGGACGTGTTACGAGCGTCGAGCTGAACAAGAAACAG
GTGCCCATTGCGAAGAAGGGTGAGAGTGTTGCGGTTAAAATTCAACAAAA
ATGA
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protein sequence of Gvermi797.t1

>Gvermi797.t1 ID=Gvermi797.t1|Name=Gvermi797.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=618bp
MQDIILYLDPSTWNVLKFIILTIITTPLLEFLFQRFLNTKATYDVMRGEH
VQFGETNLGVLSLHSVYWGRRSNRFYLLLVASLVFASELIFEFSFSAQAL
DIAESREVWLPSSHAEYYNFSDSSLNGRIRWDPFQFPVLATETCMKGESE
MSRSRRSNETHEEFTSGFEYHMEDTYVIRKPYLALDNSSVLCSVSTIIGR
VSFFVPHVYLVRNSTGAEGFMALKNTSNSENLRHSLTSGTFQLYGYENFE
RVMASENVVCIPSISSSKTSLCAMYEKNTFILVRTGEIWSKRIRSNTLLS
VILNATGKPVEGMRSRSRRLRYLATVNGNALLNAFVDGQRPSDKLVSKDK
METLALLVLVVANEEGVSGLRNKRGIRSIVAGQAQTATMKRLAFVPIAIL
VSFLVSLLVVDMTFSKFIAFYAKNDVRKMWGYARAGPRADTSIQWLRERI
CEDLLHDGVFRNISSKDLSLKNVSGKLRMLPIILPGGTNHVGYDYGKMRV
KGQYVHHNEIKAAQSIRILADGVEKAVDGAQLIVVEGLFDEHEIEYVQAL
REHTYNKDPIVVGMDVMEGLLRVGTPLVVGHVAEWLDDGRVTSVELNKKQ
VPIAKKGESVAVKIQQK*
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mRNA from alignment at ScGOVlb_2952:346649..348634+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi797.t1 ID=Gvermi797.t1|Name=Gvermi797.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1986bp|location=Sequence derived from alignment at ScGOVlb_2952:346649..348634+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGGATATCATTCTCTACCTAGACCCCTCCACCTGGAATGTTCTCAA
GTTTATCATTCTCACCATCATAACAACGCCTCTCCTGGAATTTCTTTTCC
AACGTTTTTTGAACACCAAAGCCACCTACGATGTAATGCGCGGTGAACAT
GTTCAGTTTGGCGAGACTAACCTTGGCGTTCTGTCCCTTCATTCCGTGTA
CTGGGGTCGGCGGAGTAACAGATTCTACTTGCTGCTGGTCGCATCGCTTG
TTTTCGCATCCGAACTCATCTTTGAATTCTCCTTTTCTGCACAAGCATTG
GACATTGCTGAGTCGCGCGAAGTTTGGCTTCCTTCGTCACACGCGGAATA
TTATAACTTTTCGGACAGTTCTCTGAACGGCCGCATACGATGGGACCCTT
TTCAGTTTCCGGTTTTGGCCACCGAGACCTGCATGAAAGGCGAGTCCGAG
ATGAGCCGATCACGACGTTCTAACGAGACACATGAAGAATTCACATCCGG
ATTTGAATATCACATGGAGGACACATATGTCATCCGGAAGCCCTATCTTG
CATTAGACAACTCTTCAGTGCTATGCAGCGTCTCTACAATTATTGGAAGA
GTGAGCTTTTTCGTTCCTCATGTCTATCTCGTACGAAATTCCACCGGGGC
TGAGGGATTTATGGCGTTGAAGAACACCTCTAACTCTGAAAACTTGCGCC
ATTCGTTAACAAGTGGTACATTTCAATTGTACGGATACGAGAATTTCGAG
CGAGTGATGGCAAGCGAAAACGTAGTTTGCATCCCGTCAATTTCGAGTTC
AAAAACCTCTCTGTGCGCCATGTATGAGAAGAATACCTTCATCCTGGTAC
GTACTGGAGAAATCTGGTCTAAGCGGATACGGAGCAATACCTTGCTTTCC
GTGATTTTGAACGCAACTGGCAAACCCGTGGAAGGCATGAGAAGCCGTTC
ACGAAGACTACGATATCTTGCCACCGTCAATGGCAATGCGCTTCTGAATG
CTTTCGTGGACGGGCAACGTCCCTCGGACAAACTGGTCAGCAAGGATAAG
ATGGAGACCCTTGCGTTGTTGGTATTGGTTGTGGCCAATGAGGAGGGCGT
TAGTGGCTTGCGGAACAAAAGGGGAATACGTTCTATTGTTGCTGGACAAG
CACAGACAGCAACTATGAAGAGACTGGCGTTCGTTCCTATTGCAATCTTG
GTATCTTTTCTGGTGTCCTTACTCGTTGTTGATATGACTTTCTCCAAATT
TATTGCTTTTTATGCAAAGAATGACGTAAGAAAAATGTGGGGTTACGCAC
GGGCAGGACCAAGGGCGGACACGTCAATTCAGTGGCTCCGAGAGCGCATT
TGTGAAGACCTCTTGCATGATGGCGTGTTCAGAAACATATCAAGCAAGGA
TTTGTCTCTCAAAAATGTCTCAGGCAAATTGAGAATGTTACCGATCATTC
TTCCTGGCGGTACCAATCACGTAGGATACGATTATGGTAGTCGGACTTGA
CGGGCCTTTCGTGACTACGATTCGTGCGCTTCTGTCACCCTAGTCTATGA
AAGAGATGAGAGTGAAAGGACAGTATGTGCACCACAACGAAATCAAGGCA
GCGCAGAGTATCAGGATATTAGCAGATGGTGTCGAAAAGGCAGTGGATGG
TGCACAACTGATAGTTGTTGAAGGCCTATTCGATGAACATGAAATAGAAT
ATGTACGTAAAGAAGTGATAAAGGACTTTTAAACGATTCTGACAAACGTA
GATCATCCGCTTTTGGCTCCCTAGAAGCATTGCGGGAGCACACCTACAAC
AAAGACCCAATCGTGGTGGGTATGGATGTGATGGAGGGCCTCCTGAGAGT
AGGGACGCCATTGGTGGTCGGACATGTTGCCGAATGGCTTGATGATGGAC
GTGTTACGAGCGTCGAGCTGAACAAGAAACAGGTGCCCATTGCGAAGAAG
GGTGAGAGTGTTGCGGTTAAAATTCAACAAAAATGA
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Coding sequence (CDS) from alignment at ScGOVlb_2952:346649..348634+

>Gvermi797.t1 ID=Gvermi797.t1|Name=Gvermi797.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1854bp|location=Sequence derived from alignment at ScGOVlb_2952:346649..348634+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGGATATCATTCTCTACCTAGACCCCTCCACCTGGAATGTTCTCAA
GTTTATCATTCTCACCATCATAACAACGCCTCTCCTGGAATTTCTTTTCC
AACGTTTTTTGAACACCAAAGCCACCTACGATGTAATGCGCGGTGAACAT
GTTCAGTTTGGCGAGACTAACCTTGGCGTTCTGTCCCTTCATTCCGTGTA
CTGGGGTCGGCGGAGTAACAGATTCTACTTGCTGCTGGTCGCATCGCTTG
TTTTCGCATCCGAACTCATCTTTGAATTCTCCTTTTCTGCACAAGCATTG
GACATTGCTGAGTCGCGCGAAGTTTGGCTTCCTTCGTCACACGCGGAATA
TTATAACTTTTCGGACAGTTCTCTGAACGGCCGCATACGATGGGACCCTT
TTCAGTTTCCGGTTTTGGCCACCGAGACCTGCATGAAAGGCGAGTCCGAG
ATGAGCCGATCACGACGTTCTAACGAGACACATGAAGAATTCACATCCGG
ATTTGAATATCACATGGAGGACACATATGTCATCCGGAAGCCCTATCTTG
CATTAGACAACTCTTCAGTGCTATGCAGCGTCTCTACAATTATTGGAAGA
GTGAGCTTTTTCGTTCCTCATGTCTATCTCGTACGAAATTCCACCGGGGC
TGAGGGATTTATGGCGTTGAAGAACACCTCTAACTCTGAAAACTTGCGCC
ATTCGTTAACAAGTGGTACATTTCAATTGTACGGATACGAGAATTTCGAG
CGAGTGATGGCAAGCGAAAACGTAGTTTGCATCCCGTCAATTTCGAGTTC
AAAAACCTCTCTGTGCGCCATGTATGAGAAGAATACCTTCATCCTGGTAC
GTACTGGAGAAATCTGGTCTAAGCGGATACGGAGCAATACCTTGCTTTCC
GTGATTTTGAACGCAACTGGCAAACCCGTGGAAGGCATGAGAAGCCGTTC
ACGAAGACTACGATATCTTGCCACCGTCAATGGCAATGCGCTTCTGAATG
CTTTCGTGGACGGGCAACGTCCCTCGGACAAACTGGTCAGCAAGGATAAG
ATGGAGACCCTTGCGTTGTTGGTATTGGTTGTGGCCAATGAGGAGGGCGT
TAGTGGCTTGCGGAACAAAAGGGGAATACGTTCTATTGTTGCTGGACAAG
CACAGACAGCAACTATGAAGAGACTGGCGTTCGTTCCTATTGCAATCTTG
GTATCTTTTCTGGTGTCCTTACTCGTTGTTGATATGACTTTCTCCAAATT
TATTGCTTTTTATGCAAAGAATGACGTAAGAAAAATGTGGGGTTACGCAC
GGGCAGGACCAAGGGCGGACACGTCAATTCAGTGGCTCCGAGAGCGCATT
TGTGAAGACCTCTTGCATGATGGCGTGTTCAGAAACATATCAAGCAAGGA
TTTGTCTCTCAAAAATGTCTCAGGCAAATTGAGAATGTTACCGATCATTC
TTCCTGGCGGTACCAATCACGTAGGATACGATTATGGTAAGATGAGAGTG
AAAGGACAGTATGTGCACCACAACGAAATCAAGGCAGCGCAGAGTATCAG
GATATTAGCAGATGGTGTCGAAAAGGCAGTGGATGGTGCACAACTGATAG
TTGTTGAAGGCCTATTCGATGAACATGAAATAGAATATGTACAAGCATTG
CGGGAGCACACCTACAACAAAGACCCAATCGTGGTGGGTATGGATGTGAT
GGAGGGCCTCCTGAGAGTAGGGACGCCATTGGTGGTCGGACATGTTGCCG
AATGGCTTGATGATGGACGTGTTACGAGCGTCGAGCTGAACAAGAAACAG
GTGCCCATTGCGAAGAAGGGTGAGAGTGTTGCGGTTAAAATTCAACAAAA
ATGA
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