Gvermi7969.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7969.t1
Unique NameGvermi7969.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length499
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:342111..343704 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7969Gvermi7969Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 342111..343704 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7969.t1Gvermi7969.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 342111..343704 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7969.t1.start1Gvermi7969.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 342111..342113 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7969.t1.CDS1Gvermi7969.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 342111..343203 +
Gvermi7969.t1.CDS2Gvermi7969.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 343301..343704 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7969.t1.exon1Gvermi7969.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 342111..343203 +
Gvermi7969.t1.exon2Gvermi7969.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 343301..343704 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7969.t1.intron1Gvermi7969.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 343204..343300 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7969.t1.stop1Gvermi7969.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 343702..343704 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7969.t1 ID=Gvermi7969.t1|Name=Gvermi7969.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=499bp
MNCIANALLLCSVCFYTHAQIIADLPPLPSPSPHETPSPLPSALLELVHP
SPSPLAPTAVPPHQSLAPHWSQPGGADAAASSLAPPPTAAAPPNVPAAAP
PPTFPSDARPVPSHAASPSEQFINADGKCVRDVSKPRPKLGKSQLRYAMC
VLLGTAGVAVASLLYSLAADWEAKQDHSWLRLFWIILARLLILATVKISA
ALVASITKASPDDSALDASGAFLTWGSAIFTRLYYEGFKMNLATLEFIDA
ESVWHDELRHFLSARSPFLPDGEHELLSAEKNPGADAHSCDPSRLTIRQR
LFGGNFERKLLMVTSLLYIASELSVLTANVAALVDAFRPDLTRIVYFSSD
ESAGQCGMSAADVPIIFGVVALQILNALTQQPSLVPILSVSASCGQQKYE
NGSQFMPWMRWVAGMVLWMWVSSTLALPLFAWSLNPIFTGGDLTLFWYII
IAPPTYTSVSYIISATFAIFAALVGSFIMIRVARSQRVKQKQNANAVP*
back to top

spliced messenger RNA

>Gvermi7969.t1 ID=Gvermi7969.t1|Name=Gvermi7969.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1497bp|location=Sequence derived from alignment at ScGOVlb_24226:342111..343704+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACTGCATCGCCAACGCGCTGCTCTTGTGTTCCGTGTGCTTCTACAC
CCATGCCCAAATCATTGCCGACCTGCCCCCCCTGCCGTCGCCTTCTCCGC
ACGAAACCCCAAGCCCTCTACCCAGTGCTCTGCTGGAGCTCGTGCATCCG
TCCCCTTCCCCACTCGCCCCAACAGCGGTGCCACCTCACCAGTCGCTCGC
CCCGCATTGGTCTCAGCCTGGCGGAGCCGATGCAGCTGCTTCTTCCCTCG
CCCCACCCCCGACAGCTGCCGCCCCGCCCAATGTTCCTGCTGCCGCGCCC
CCGCCCACTTTTCCGTCGGACGCGcgtcccgtcccgtcacacgccgcgtc
cccgtccGAACAATTCATCAACGCCGACGGAAAATGCGTGCGAGATGTCT
CCAAGCCGCGGCCGAAGCTGGGCAAATCGCAGCTTCGATACGCCATGTGC
GTCCTGCTCGGCACCGCGGGCGTTGCCGTCGCCAGCCTGCTGTACAGCCT
CGCCGCAGACTGGGAGGCCAAGCAGGACCATTCGTGGCTCCGACTGTTCT
GGATCATTTTGGCCAGACTGCTCATCCTGGCCACGGTCAAGATTTCCGCC
GCCTTGGTTGCGTCCATCACGAAGGCTTCCCCGGACGACAGCGCCCTCGA
CGCCAGCGGCGCCTTCCTCACCTGGGGCTCGGCCATTTTCACCAGGCTGT
ACTACGAGGGGTTCAAAATGAACCTGGCCACCCTGGAGTTCATCGACGCA
GAGTCCGTGTGGCACGACGAACTGCGCCATTTCCTCAGTGCGCGCTCGCC
TTTCTTGCCAGACGGTGAACACGAGTTGCTGTCAGCGGAAAAGAACCCAG
GCGCAGACGCGCACAGTTGCGACCCGAGCAGGTTGACAATTCGGCAAAGG
CTGTTTGGCGGAAACTTTGAGCGCAAGCTGCTCATGGTGACCTCTCTGCT
GTACATTGCGTCTGAGCTATCGGTGCTCACGGCGAACGTCGCCGCGCTTG
TTGATGCCTTTCGGCCCGATCTGACGCGCATCGTGTACTTTTCGTCCGAC
GAGTCTGCGGGGCAATGCGGGATGTCCGCCGCCGACGTACCGATCATCTT
CGGCGTGGTTGCTCTACAAATCTTGAACGCGCTCACCCAGCAGCCTTCGC
TGGTTCCTATTCTGTCCGTGAGCGCTTCTTGCGGGCAGCAAAAGTACGAG
AATGGGAGCCAATTCATGCCGTGGATGCGATGGGTCGCTGGGATGGTGCT
CTGGATGTGGGTGTCGTCAACGCTCGCCCTGCCGCTGTTCGCCTGGTCGT
TGAACCCAATCTTCACGGGCGGTGATCTCACCCTGTTTTGGTACATCATC
ATTGCCCCCCCGACTTACACATCAGTCAGCTATATAATCTCGGCCACGTT
CGCCATATTCGCTGCGCTCGTTGGGTCGTTCATCATGATCCGCGTCGCCA
GAAGTCAGCGCGTAAAACAAAAACAGAACGCAAACGCCGTCCCGTAG
back to top

protein sequence of Gvermi7969.t1

>Gvermi7969.t1 ID=Gvermi7969.t1|Name=Gvermi7969.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=499bp
MNCIANALLLCSVCFYTHAQIIADLPPLPSPSPHETPSPLPSALLELVHP
SPSPLAPTAVPPHQSLAPHWSQPGGADAAASSLAPPPTAAAPPNVPAAAP
PPTFPSDARPVPSHAASPSEQFINADGKCVRDVSKPRPKLGKSQLRYAMC
VLLGTAGVAVASLLYSLAADWEAKQDHSWLRLFWIILARLLILATVKISA
ALVASITKASPDDSALDASGAFLTWGSAIFTRLYYEGFKMNLATLEFIDA
ESVWHDELRHFLSARSPFLPDGEHELLSAEKNPGADAHSCDPSRLTIRQR
LFGGNFERKLLMVTSLLYIASELSVLTANVAALVDAFRPDLTRIVYFSSD
ESAGQCGMSAADVPIIFGVVALQILNALTQQPSLVPILSVSASCGQQKYE
NGSQFMPWMRWVAGMVLWMWVSSTLALPLFAWSLNPIFTGGDLTLFWYII
IAPPTYTSVSYIISATFAIFAALVGSFIMIRVARSQRVKQKQNANAVP*
back to top

mRNA from alignment at ScGOVlb_24226:342111..343704+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7969.t1 ID=Gvermi7969.t1|Name=Gvermi7969.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1594bp|location=Sequence derived from alignment at ScGOVlb_24226:342111..343704+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACTGCATCGCCAACGCGCTGCTCTTGTGTTCCGTGTGCTTCTACAC
CCATGCCCAAATCATTGCCGACCTGCCCCCCCTGCCGTCGCCTTCTCCGC
ACGAAACCCCAAGCCCTCTACCCAGTGCTCTGCTGGAGCTCGTGCATCCG
TCCCCTTCCCCACTCGCCCCAACAGCGGTGCCACCTCACCAGTCGCTCGC
CCCGCATTGGTCTCAGCCTGGCGGAGCCGATGCAGCTGCTTCTTCCCTCG
CCCCACCCCCGACAGCTGCCGCCCCGCCCAATGTTCCTGCTGCCGCGCCC
CCGCCCACTTTTCCGTCGGACGCGcgtcccgtcccgtcacacgccgcgtc
cccgtccGAACAATTCATCAACGCCGACGGAAAATGCGTGCGAGATGTCT
CCAAGCCGCGGCCGAAGCTGGGCAAATCGCAGCTTCGATACGCCATGTGC
GTCCTGCTCGGCACCGCGGGCGTTGCCGTCGCCAGCCTGCTGTACAGCCT
CGCCGCAGACTGGGAGGCCAAGCAGGACCATTCGTGGCTCCGACTGTTCT
GGATCATTTTGGCCAGACTGCTCATCCTGGCCACGGTCAAGATTTCCGCC
GCCTTGGTTGCGTCCATCACGAAGGCTTCCCCGGACGACAGCGCCCTCGA
CGCCAGCGGCGCCTTCCTCACCTGGGGCTCGGCCATTTTCACCAGGCTGT
ACTACGAGGGGTTCAAAATGAACCTGGCCACCCTGGAGTTCATCGACGCA
GAGTCCGTGTGGCACGACGAACTGCGCCATTTCCTCAGTGCGCGCTCGCC
TTTCTTGCCAGACGGTGAACACGAGTTGCTGTCAGCGGAAAAGAACCCAG
GCGCAGACGCGCACAGTTGCGACCCGAGCAGGTTGACAATTCGGCAAAGG
CTGTTTGGCGGAAACTTTGAGCGCAAGCTGCTCATGGTGACCTCTCTGCT
GTACATTGCGTCTGAGCTATCGGTGCTCACGGCGAACGTCGCCGCGCTTG
TTGATGCCTTTCGGCCCGATCTGACGCGCATCGTGTACTTTTCGTCCGAC
GAGTCTGCGGGGCAATGCGGGATGTCCGCCGCCGACGTACCGAGTAAGTT
GCCGGCACGCCTCTCGCCTTCTCCCTACCGCGCGCAAATCGCTTCTTGTG
CGCACAATGAGGGGCGTCTGACTAACAGCCCGTCGCGCAGTCATCTTCGG
CGTGGTTGCTCTACAAATCTTGAACGCGCTCACCCAGCAGCCTTCGCTGG
TTCCTATTCTGTCCGTGAGCGCTTCTTGCGGGCAGCAAAAGTACGAGAAT
GGGAGCCAATTCATGCCGTGGATGCGATGGGTCGCTGGGATGGTGCTCTG
GATGTGGGTGTCGTCAACGCTCGCCCTGCCGCTGTTCGCCTGGTCGTTGA
ACCCAATCTTCACGGGCGGTGATCTCACCCTGTTTTGGTACATCATCATT
GCCCCCCCGACTTACACATCAGTCAGCTATATAATCTCGGCCACGTTCGC
CATATTCGCTGCGCTCGTTGGGTCGTTCATCATGATCCGCGTCGCCAGAA
GTCAGCGCGTAAAACAAAAACAGAACGCAAACGCCGTCCCGTAG
back to top

Coding sequence (CDS) from alignment at ScGOVlb_24226:342111..343704+

>Gvermi7969.t1 ID=Gvermi7969.t1|Name=Gvermi7969.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1497bp|location=Sequence derived from alignment at ScGOVlb_24226:342111..343704+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACTGCATCGCCAACGCGCTGCTCTTGTGTTCCGTGTGCTTCTACAC
CCATGCCCAAATCATTGCCGACCTGCCCCCCCTGCCGTCGCCTTCTCCGC
ACGAAACCCCAAGCCCTCTACCCAGTGCTCTGCTGGAGCTCGTGCATCCG
TCCCCTTCCCCACTCGCCCCAACAGCGGTGCCACCTCACCAGTCGCTCGC
CCCGCATTGGTCTCAGCCTGGCGGAGCCGATGCAGCTGCTTCTTCCCTCG
CCCCACCCCCGACAGCTGCCGCCCCGCCCAATGTTCCTGCTGCCGCGCCC
CCGCCCACTTTTCCGTCGGACGCGcgtcccgtcccgtcacacgccgcgtc
cccgtccGAACAATTCATCAACGCCGACGGAAAATGCGTGCGAGATGTCT
CCAAGCCGCGGCCGAAGCTGGGCAAATCGCAGCTTCGATACGCCATGTGC
GTCCTGCTCGGCACCGCGGGCGTTGCCGTCGCCAGCCTGCTGTACAGCCT
CGCCGCAGACTGGGAGGCCAAGCAGGACCATTCGTGGCTCCGACTGTTCT
GGATCATTTTGGCCAGACTGCTCATCCTGGCCACGGTCAAGATTTCCGCC
GCCTTGGTTGCGTCCATCACGAAGGCTTCCCCGGACGACAGCGCCCTCGA
CGCCAGCGGCGCCTTCCTCACCTGGGGCTCGGCCATTTTCACCAGGCTGT
ACTACGAGGGGTTCAAAATGAACCTGGCCACCCTGGAGTTCATCGACGCA
GAGTCCGTGTGGCACGACGAACTGCGCCATTTCCTCAGTGCGCGCTCGCC
TTTCTTGCCAGACGGTGAACACGAGTTGCTGTCAGCGGAAAAGAACCCAG
GCGCAGACGCGCACAGTTGCGACCCGAGCAGGTTGACAATTCGGCAAAGG
CTGTTTGGCGGAAACTTTGAGCGCAAGCTGCTCATGGTGACCTCTCTGCT
GTACATTGCGTCTGAGCTATCGGTGCTCACGGCGAACGTCGCCGCGCTTG
TTGATGCCTTTCGGCCCGATCTGACGCGCATCGTGTACTTTTCGTCCGAC
GAGTCTGCGGGGCAATGCGGGATGTCCGCCGCCGACGTACCGATCATCTT
CGGCGTGGTTGCTCTACAAATCTTGAACGCGCTCACCCAGCAGCCTTCGC
TGGTTCCTATTCTGTCCGTGAGCGCTTCTTGCGGGCAGCAAAAGTACGAG
AATGGGAGCCAATTCATGCCGTGGATGCGATGGGTCGCTGGGATGGTGCT
CTGGATGTGGGTGTCGTCAACGCTCGCCCTGCCGCTGTTCGCCTGGTCGT
TGAACCCAATCTTCACGGGCGGTGATCTCACCCTGTTTTGGTACATCATC
ATTGCCCCCCCGACTTACACATCAGTCAGCTATATAATCTCGGCCACGTT
CGCCATATTCGCTGCGCTCGTTGGGTCGTTCATCATGATCCGCGTCGCCA
GAAGTCAGCGCGTAAAACAAAAACAGAACGCAAACGCCGTCCCGTAG
back to top