Gvermi7968.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7968.t1
Unique NameGvermi7968.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length352
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:339993..341048 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog248742.XP_005645455.1
PFAMsPfkB
Max annot lvl3041|Chlorophyta
Evalue1.2e-63
EggNOG OGsCOG0524@1|root,KOG2855@2759|Eukaryota,37KZV@33090|Viridiplantae,34JIF@3041|Chlorophyta
DescriptionpfkB family carbohydrate kinase
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7968Gvermi7968Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 339993..341048 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7968.t1.stop1Gvermi7968.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 339993..339995 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7968.t1.CDS1Gvermi7968.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 339993..341048 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7968.t1.exon1Gvermi7968.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 339993..341048 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7968.t1.start1Gvermi7968.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 341046..341048 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7968.t1Gvermi7968.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 339993..341048 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7968.t1 ID=Gvermi7968.t1|Name=Gvermi7968.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=352bp
MVRREADPVSQSPLGAPQVLCAGEILYDLYAAPDTPTDNVELWSRVPGGG
PANVAAALAQLGTPSAFIGMVGDDAAGEALRRALVDKSVNVDGVQTAPGL
PTRTVFVRVSADGERDFVAFGGRNSSFADTRAVDADRLPAVLFYAAKLLM
LPTLPLAFDACAAAFDRLLESAAACMLHTVVDVNWRPVFWSAHSHEEARR
RILRLVGRADVVKLSRDEVRFLYGDALASDALRHPHAVRRAVGSKAVLIT
DGSNGCAYALHYGQQLAGRAPALVPPGGVVDTTGAGDAFLAGFLSHMLRK
GGTAALRDAASVRDMVEFATATASFVIARKGVFPSLPSLQDVERLLVTLR
R*
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spliced messenger RNA

>Gvermi7968.t1 ID=Gvermi7968.t1|Name=Gvermi7968.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1056bp|location=Sequence derived from alignment at ScGOVlb_24226:339993..341048- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCGCCGCGAGGCAGACCCCGTCAGTCAATCGCCGCTGGGCGCCCC
GCAAGTGCTTTGCGCCGGCGAGATTCTTTACGACCTGTACGCCGCGCCCG
ACACGCCTACCGACAACGTCGAGCTGTGGAGCAGGGTGCCGGGCGGCGGC
CCGGCCAACGTCGCCGCCGCCCTGGCGCAGCTGGGCACGCCCAGCGCCTT
CATCGGCATGGTGGGCGACGACGCCGCCGGCGAGGCGCTCCGCCGCGCGC
TCGTCGACAAGAGCGTCAACGTCGACGGCGTGCAGACCGCGCCCGGCCTC
CCCACGCGCACCGTGTTCGTGCGCGTGTCCGCCGACGGCGAGCGCGACTT
TGTCGCCTTTGGCGGCCGCAACAGCAGCTTTGCCGACACGCGCGCCGTCG
ACGCCGACCGCCTGCCCGCCGTCCTTTTCTACGCCGCCAAGCTGCTCATG
CTGCCGACGCTGCCGCTGGCCTTCGACGCGTGCGCCGCCGCCTTCGACCG
CCTGCTGGAGAGCGCCGCCGCGTGCATGCTGCACACCGTCGTCGACGTCA
ACTGGCGCCCGGTGTTCTGGAGCGCGCACTCGCACGAGGAGGCGCGGCGC
CGAATCCTGCGCCTGGTCGGCCGCGCCGACGTGGTCAAGCTCTCGCGCGA
CGAGGTGCGCTTCCTGTACGGCGACGCGCTCGCCAGCGACGCGCTGCGCC
ACCCGCACGCCGTGCGGCGCGCCGTCGGCAGCAAGGCGGTGCTCATCACG
GACGGCAGCAACGGCTGCGCGTACGCGCTGCACTACGGGCAGCAGCTGGC
GGGGCGCGCGCCCGCCCTCGTGCCGCCGGGCGGCGTGGTGGACACCACCG
GCGCGGGCGACGCGTTTCTGGCGGGCTTTCTGTCGCACATGCTGCGCAAG
GGCGGCACGGCGGCGCTGCGCGACGCGGCGTCGGTGAGGGACATGGTTGA
GTTTGCGACGGCGACGGCGAGTTTTGTGATTGCCAGAAAAGGGGTGTTCC
CGAGTCTGCCGAGTCTGCAGGACGTGGAACGCCTGTTGGTGACACTGCGG
CGATGA
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protein sequence of Gvermi7968.t1

>Gvermi7968.t1 ID=Gvermi7968.t1|Name=Gvermi7968.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=352bp
MVRREADPVSQSPLGAPQVLCAGEILYDLYAAPDTPTDNVELWSRVPGGG
PANVAAALAQLGTPSAFIGMVGDDAAGEALRRALVDKSVNVDGVQTAPGL
PTRTVFVRVSADGERDFVAFGGRNSSFADTRAVDADRLPAVLFYAAKLLM
LPTLPLAFDACAAAFDRLLESAAACMLHTVVDVNWRPVFWSAHSHEEARR
RILRLVGRADVVKLSRDEVRFLYGDALASDALRHPHAVRRAVGSKAVLIT
DGSNGCAYALHYGQQLAGRAPALVPPGGVVDTTGAGDAFLAGFLSHMLRK
GGTAALRDAASVRDMVEFATATASFVIARKGVFPSLPSLQDVERLLVTLR
R*
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mRNA from alignment at ScGOVlb_24226:339993..341048-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7968.t1 ID=Gvermi7968.t1|Name=Gvermi7968.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1056bp|location=Sequence derived from alignment at ScGOVlb_24226:339993..341048- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGCGCCGCGAGGCAGACCCCGTCAGTCAATCGCCGCTGGGCGCCCC
GCAAGTGCTTTGCGCCGGCGAGATTCTTTACGACCTGTACGCCGCGCCCG
ACACGCCTACCGACAACGTCGAGCTGTGGAGCAGGGTGCCGGGCGGCGGC
CCGGCCAACGTCGCCGCCGCCCTGGCGCAGCTGGGCACGCCCAGCGCCTT
CATCGGCATGGTGGGCGACGACGCCGCCGGCGAGGCGCTCCGCCGCGCGC
TCGTCGACAAGAGCGTCAACGTCGACGGCGTGCAGACCGCGCCCGGCCTC
CCCACGCGCACCGTGTTCGTGCGCGTGTCCGCCGACGGCGAGCGCGACTT
TGTCGCCTTTGGCGGCCGCAACAGCAGCTTTGCCGACACGCGCGCCGTCG
ACGCCGACCGCCTGCCCGCCGTCCTTTTCTACGCCGCCAAGCTGCTCATG
CTGCCGACGCTGCCGCTGGCCTTCGACGCGTGCGCCGCCGCCTTCGACCG
CCTGCTGGAGAGCGCCGCCGCGTGCATGCTGCACACCGTCGTCGACGTCA
ACTGGCGCCCGGTGTTCTGGAGCGCGCACTCGCACGAGGAGGCGCGGCGC
CGAATCCTGCGCCTGGTCGGCCGCGCCGACGTGGTCAAGCTCTCGCGCGA
CGAGGTGCGCTTCCTGTACGGCGACGCGCTCGCCAGCGACGCGCTGCGCC
ACCCGCACGCCGTGCGGCGCGCCGTCGGCAGCAAGGCGGTGCTCATCACG
GACGGCAGCAACGGCTGCGCGTACGCGCTGCACTACGGGCAGCAGCTGGC
GGGGCGCGCGCCCGCCCTCGTGCCGCCGGGCGGCGTGGTGGACACCACCG
GCGCGGGCGACGCGTTTCTGGCGGGCTTTCTGTCGCACATGCTGCGCAAG
GGCGGCACGGCGGCGCTGCGCGACGCGGCGTCGGTGAGGGACATGGTTGA
GTTTGCGACGGCGACGGCGAGTTTTGTGATTGCCAGAAAAGGGGTGTTCC
CGAGTCTGCCGAGTCTGCAGGACGTGGAACGCCTGTTGGTGACACTGCGG
CGATGA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:339993..341048-

>Gvermi7968.t1 ID=Gvermi7968.t1|Name=Gvermi7968.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1056bp|location=Sequence derived from alignment at ScGOVlb_24226:339993..341048- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGCGCCGCGAGGCAGACCCCGTCAGTCAATCGCCGCTGGGCGCCCC
GCAAGTGCTTTGCGCCGGCGAGATTCTTTACGACCTGTACGCCGCGCCCG
ACACGCCTACCGACAACGTCGAGCTGTGGAGCAGGGTGCCGGGCGGCGGC
CCGGCCAACGTCGCCGCCGCCCTGGCGCAGCTGGGCACGCCCAGCGCCTT
CATCGGCATGGTGGGCGACGACGCCGCCGGCGAGGCGCTCCGCCGCGCGC
TCGTCGACAAGAGCGTCAACGTCGACGGCGTGCAGACCGCGCCCGGCCTC
CCCACGCGCACCGTGTTCGTGCGCGTGTCCGCCGACGGCGAGCGCGACTT
TGTCGCCTTTGGCGGCCGCAACAGCAGCTTTGCCGACACGCGCGCCGTCG
ACGCCGACCGCCTGCCCGCCGTCCTTTTCTACGCCGCCAAGCTGCTCATG
CTGCCGACGCTGCCGCTGGCCTTCGACGCGTGCGCCGCCGCCTTCGACCG
CCTGCTGGAGAGCGCCGCCGCGTGCATGCTGCACACCGTCGTCGACGTCA
ACTGGCGCCCGGTGTTCTGGAGCGCGCACTCGCACGAGGAGGCGCGGCGC
CGAATCCTGCGCCTGGTCGGCCGCGCCGACGTGGTCAAGCTCTCGCGCGA
CGAGGTGCGCTTCCTGTACGGCGACGCGCTCGCCAGCGACGCGCTGCGCC
ACCCGCACGCCGTGCGGCGCGCCGTCGGCAGCAAGGCGGTGCTCATCACG
GACGGCAGCAACGGCTGCGCGTACGCGCTGCACTACGGGCAGCAGCTGGC
GGGGCGCGCGCCCGCCCTCGTGCCGCCGGGCGGCGTGGTGGACACCACCG
GCGCGGGCGACGCGTTTCTGGCGGGCTTTCTGTCGCACATGCTGCGCAAG
GGCGGCACGGCGGCGCTGCGCGACGCGGCGTCGGTGAGGGACATGGTTGA
GTTTGCGACGGCGACGGCGAGTTTTGTGATTGCCAGAAAAGGGGTGTTCC
CGAGTCTGCCGAGTCTGCAGGACGTGGAACGCCTGTTGGTGACACTGCGG
CGATGA
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