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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 57918.XP_004306228.1 |
| PFAMs | PPR,PPR_2,PPR_3 |
| Max annot lvl | 35493|Streptophyta |
| GOs | GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0004519,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016787,GO:0016788,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0097159,GO:1901360,GO:1901363 |
| Evalue | 2.31e-08 |
| EggNOG OGs | KOG4197@1|root,KOG4197@2759|Eukaryota,37R8Y@33090|Viridiplantae,3G8FN@35493|Streptophyta,4JEU7@91835|fabids |
| Description | Pentatricopeptide repeat-containing protein |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gvermi7964.t1 ID=Gvermi7964.t1|Name=Gvermi7964.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=767bp MQAHQARSRFSADIQRAAALRKAGELGKARDVLRKASADTRRLAAYHQEL LRLTAALVAQTSSASEAERLWRALEPRLLHTGSRPDAVAFNTLLSALRLL DSRRPPAKRHDADALRILRVAHRVFHIMVETAVRPDQYTMSILFNMCAYR ASGRFAALFEQQAVERFNFKPNMVSGSALLAAFAKADSLQQVERVFNLMQ QEHVALNERSYTSIISAHFKHGKHAKVLSYCDQAIASTAVTPNVFLFSGA LASCLRACDAENGLRIFQTMQERQVRPTEPILNLMLELGVRTGDYGIGLK YITEWASKHGAACDALVCNKIIASWKKTQHNAPGAINAVHQVLQYLENSS AIKLDSSTYNAALTTLVALGTIDRVGEFLRRMRGRGIVPDLVTYNILIHS YGTAGDFDRALGVIHVMKQNHVHPDVITYNTLLNLLLNYGEADKAETLLQ DMENNEHVEMDTVSRCMQLKLYRIRGNKQAALQLCNTTQLLNGALDAKAH GLLLSILFEFDEGKKAISLFGWLVWKRLAACAAYNVLIDNIGKREDGCEQ CAKLFSHMKRKGIPPDKVTYSTMIRVFSKSGRLRLAFRLLSEMQDIGLAM SDMHAWTALMDGCRRYGQWQRAVELLAFMKKHSSQSKHSLVPSPSTACYN AALYAAGIDGQDWPSCVKIYESLLADKTRRPDHVTYSAMASIILKKRGRI SEWHIVTQVCQALEHLLLDDGELLKGSAQELRWPKRLHQGLNRPMRKKLL SKLSDLKALKGPEIQR* back to topspliced messenger RNA >Gvermi7964.t1 ID=Gvermi7964.t1|Name=Gvermi7964.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2301bp|location=Sequence derived from alignment at ScGOVlb_24226:330518..332818+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.
ATGCAGGCCCATCAAGCACGCTCACGCTTTTCGGCCGATATCCAGCGTGC CGCAGCCCTGAGAAAGGCCGGCGAGCTCGGCAAAGCGCGCGACGTGCTGC GCAAAGCCTCTGCGGACACGCGTCGCCTTGCCGCCTACCACCAAGAGCTG CTTCGCCTCACTGCAGCCCTCGTGGCGCAAACGTCCTCGGCCTCGGAGGC TGAGCGTCTGTGGCGCGCCCTCGAACCTCGTCTGTTGCACACTGGCTCGC GCCCAGATGCGGTCGCCTTCAACACCCTTTTAAGCGCGCTGCGCCTCTTA GATTCCCGAAGGCCGCCCGCAAAACGCCATGACGCCGACGCGCTGCGCAT CTTGCGCGTGGCGCACCGCGTGTTCCACATCATGGTTGAGACGGCGGTGC GCCCGGACCAGTACACTATGTCTATTTTGTTCAACATGTGTGCTTACCGT GCCAGCGGCCGCTTTGCTGCGTTGTTTGAGCAACAAGCCGTTGAGCGCTT TAACTTCAAGCCCAACATGGTGTCCGGCTCTGCCCTGCTCGCAGCTTTTG CCAAAGCAGACTCCTTGCAACAAGTTGAGCGAGTCTTCAATCTCATGCAG CAAGAACACGTTGCGCTGAACGAAAGGAGCTACACATCGATCATTTCAGC GCACTTCAAGCATGGGAAGCATGCAAAAGTGCTCAGCTACTGTGATCAAG CCATAGCTTCCACGGCCGTCACGCCGAATGTCTTTCTGTTCTCCGGCGCA TTGGCCTCTTGCCTACGCGCGTGCGATGCCGAAAATGGGCTTCGCATCTT TCAGACAATGCAGGAGAGGCAAGTACGTCCCACAGAACCCATACTTAATC TGATGCTAGAGTTAGGTGTACGGACAGGAGACTATGGCATCGGTCTCAAA TACATCACGGAATGGGCTTCGAAGCACGGTGCTGCCTGCGACGCACTTGT TTGCAACAAGATCATAGCGTCGTGGAAGAAAACGCAGCACAACGCGCCCG GTGCAATCAACGCCGTGCATCAAGTATTGCAATACTTGGAAAACAGCAGT GCCATTAAACTCGACTCCTCCACTTACAATGCGGCTTTGACAACGCTCGT TGCGCTCGGGACAATTGACCGCGTTGGGGAATTCTTGCGGCGCATGCGTG GCAGAGGGATCGTGCCAGATCTTGTGACGTACAACATTTTGATACACTCG TACGGAACAGCTGGCGACTTTGATCGGGCGCTGGGCGTTATTCACGTCAT GAAGCAGAACCACGTCCATCCGGATGTTATTACTTATAATACGCTTCTCA ACCTGCTTTTGAATTATGGAGAGGCTGATAAGGCAGAAACTCTGCTGCAA GACATGGAAAACAATGAGCACGTAGAGATGGATACGGTGAGCAGATGTAT GCAGCTAAAGTTGTACAGGATTCGAGGAAACAAACAGGCAGCGCTGCAGT TGTGTAACACAACACAACTGTTGAACGGCGCTCTTGATGCAAAGGCGCAC GGGTTGTTGCTTTCCATTCTTTTCGAGTTTGATGAAGGCAAGAAAGCCAT CTCTCTGTTCGGATGGTTGGTGTGGAAGCGCCTAGCTGCATGCGCAGCCT ATAACGTCTTGATCGACAACATCGGGAAGCGGGAAGATGGTTGCGAGCAG TGCGCAAAGCTGTTCAGCCATATGAAAAGAAAAGGGATCCCACCCGACAA GGTGACGTACTCAACGATGATTCGCGTGTTTTCGAAGAGTGGCCGACTGC GTCTCGCGTTCCGCTTGCTGAGCGAGATGCAAGATATCGGGCTAGCCATG TCGGACATGCATGCTTGGACGGCGCTGATGGACGGATGCCGAAGGTATGG ACAATGGCAGCGGGCTGTTGAGCTTCTGGCGTTCATGAAGAAGCACAGTT CGCAATCCAAACATTCGCTTGTGCCCAGCCCATCGACCGCATGCTACAAC GCAGCTCTTTACGCGGCGGGGATTGACGGCCAGGATTGGCCAAGTTGTGT GAAGATCTACGAGTCACTTCTCGCGGACAAGACGCGACGTCCGGATCATG TGACGTACTCTGCCATGGCGAGCATTATTCTAAAAAAGAGGGGTAGGATT TCGGAGTGGCACATTGTGACGCAGGTCTGCCAAGCTCTTGAGCACTTGTT GCTCGACGACGGCGAGCTATTGAAAGGTTCTGCACAGGAGTTACGGTGGC CGAAGCGCTTGCATCAAGGCTTGAATAGGCCGATGAGAAAAAAGCTACTG TCAAAACTGAGCGACCTCAAGGCCTTGAAAGGGCCCGAGATTCAGCGATG A back to topprotein sequence of Gvermi7964.t1 >Gvermi7964.t1 ID=Gvermi7964.t1|Name=Gvermi7964.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=767bp
MQAHQARSRFSADIQRAAALRKAGELGKARDVLRKASADTRRLAAYHQEL LRLTAALVAQTSSASEAERLWRALEPRLLHTGSRPDAVAFNTLLSALRLL DSRRPPAKRHDADALRILRVAHRVFHIMVETAVRPDQYTMSILFNMCAYR ASGRFAALFEQQAVERFNFKPNMVSGSALLAAFAKADSLQQVERVFNLMQ QEHVALNERSYTSIISAHFKHGKHAKVLSYCDQAIASTAVTPNVFLFSGA LASCLRACDAENGLRIFQTMQERQVRPTEPILNLMLELGVRTGDYGIGLK YITEWASKHGAACDALVCNKIIASWKKTQHNAPGAINAVHQVLQYLENSS AIKLDSSTYNAALTTLVALGTIDRVGEFLRRMRGRGIVPDLVTYNILIHS YGTAGDFDRALGVIHVMKQNHVHPDVITYNTLLNLLLNYGEADKAETLLQ DMENNEHVEMDTVSRCMQLKLYRIRGNKQAALQLCNTTQLLNGALDAKAH GLLLSILFEFDEGKKAISLFGWLVWKRLAACAAYNVLIDNIGKREDGCEQ CAKLFSHMKRKGIPPDKVTYSTMIRVFSKSGRLRLAFRLLSEMQDIGLAM SDMHAWTALMDGCRRYGQWQRAVELLAFMKKHSSQSKHSLVPSPSTACYN AALYAAGIDGQDWPSCVKIYESLLADKTRRPDHVTYSAMASIILKKRGRI SEWHIVTQVCQALEHLLLDDGELLKGSAQELRWPKRLHQGLNRPMRKKLL SKLSDLKALKGPEIQR* back to topmRNA from alignment at ScGOVlb_24226:330518..332818+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gvermi7964.t1 ID=Gvermi7964.t1|Name=Gvermi7964.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2301bp|location=Sequence derived from alignment at ScGOVlb_24226:330518..332818+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGCAGGCCCATCAAGCACGCTCACGCTTTTCGGCCGATATCCAGCGTGC
CGCAGCCCTGAGAAAGGCCGGCGAGCTCGGCAAAGCGCGCGACGTGCTGC
GCAAAGCCTCTGCGGACACGCGTCGCCTTGCCGCCTACCACCAAGAGCTG
CTTCGCCTCACTGCAGCCCTCGTGGCGCAAACGTCCTCGGCCTCGGAGGC
TGAGCGTCTGTGGCGCGCCCTCGAACCTCGTCTGTTGCACACTGGCTCGC
GCCCAGATGCGGTCGCCTTCAACACCCTTTTAAGCGCGCTGCGCCTCTTA
GATTCCCGAAGGCCGCCCGCAAAACGCCATGACGCCGACGCGCTGCGCAT
CTTGCGCGTGGCGCACCGCGTGTTCCACATCATGGTTGAGACGGCGGTGC
GCCCGGACCAGTACACTATGTCTATTTTGTTCAACATGTGTGCTTACCGT
GCCAGCGGCCGCTTTGCTGCGTTGTTTGAGCAACAAGCCGTTGAGCGCTT
TAACTTCAAGCCCAACATGGTGTCCGGCTCTGCCCTGCTCGCAGCTTTTG
CCAAAGCAGACTCCTTGCAACAAGTTGAGCGAGTCTTCAATCTCATGCAG
CAAGAACACGTTGCGCTGAACGAAAGGAGCTACACATCGATCATTTCAGC
GCACTTCAAGCATGGGAAGCATGCAAAAGTGCTCAGCTACTGTGATCAAG
CCATAGCTTCCACGGCCGTCACGCCGAATGTCTTTCTGTTCTCCGGCGCA
TTGGCCTCTTGCCTACGCGCGTGCGATGCCGAAAATGGGCTTCGCATCTT
TCAGACAATGCAGGAGAGGCAAGTACGTCCCACAGAACCCATACTTAATC
TGATGCTAGAGTTAGGTGTACGGACAGGAGACTATGGCATCGGTCTCAAA
TACATCACGGAATGGGCTTCGAAGCACGGTGCTGCCTGCGACGCACTTGT
TTGCAACAAGATCATAGCGTCGTGGAAGAAAACGCAGCACAACGCGCCCG
GTGCAATCAACGCCGTGCATCAAGTATTGCAATACTTGGAAAACAGCAGT
GCCATTAAACTCGACTCCTCCACTTACAATGCGGCTTTGACAACGCTCGT
TGCGCTCGGGACAATTGACCGCGTTGGGGAATTCTTGCGGCGCATGCGTG
GCAGAGGGATCGTGCCAGATCTTGTGACGTACAACATTTTGATACACTCG
TACGGAACAGCTGGCGACTTTGATCGGGCGCTGGGCGTTATTCACGTCAT
GAAGCAGAACCACGTCCATCCGGATGTTATTACTTATAATACGCTTCTCA
ACCTGCTTTTGAATTATGGAGAGGCTGATAAGGCAGAAACTCTGCTGCAA
GACATGGAAAACAATGAGCACGTAGAGATGGATACGGTGAGCAGATGTAT
GCAGCTAAAGTTGTACAGGATTCGAGGAAACAAACAGGCAGCGCTGCAGT
TGTGTAACACAACACAACTGTTGAACGGCGCTCTTGATGCAAAGGCGCAC
GGGTTGTTGCTTTCCATTCTTTTCGAGTTTGATGAAGGCAAGAAAGCCAT
CTCTCTGTTCGGATGGTTGGTGTGGAAGCGCCTAGCTGCATGCGCAGCCT
ATAACGTCTTGATCGACAACATCGGGAAGCGGGAAGATGGTTGCGAGCAG
TGCGCAAAGCTGTTCAGCCATATGAAAAGAAAAGGGATCCCACCCGACAA
GGTGACGTACTCAACGATGATTCGCGTGTTTTCGAAGAGTGGCCGACTGC
GTCTCGCGTTCCGCTTGCTGAGCGAGATGCAAGATATCGGGCTAGCCATG
TCGGACATGCATGCTTGGACGGCGCTGATGGACGGATGCCGAAGGTATGG
ACAATGGCAGCGGGCTGTTGAGCTTCTGGCGTTCATGAAGAAGCACAGTT
CGCAATCCAAACATTCGCTTGTGCCCAGCCCATCGACCGCATGCTACAAC
GCAGCTCTTTACGCGGCGGGGATTGACGGCCAGGATTGGCCAAGTTGTGT
GAAGATCTACGAGTCACTTCTCGCGGACAAGACGCGACGTCCGGATCATG
TGACGTACTCTGCCATGGCGAGCATTATTCTAAAAAAGAGGGGTAGGATT
TCGGAGTGGCACATTGTGACGCAGGTCTGCCAAGCTCTTGAGCACTTGTT
GCTCGACGACGGCGAGCTATTGAAAGGTTCTGCACAGGAGTTACGGTGGC
CGAAGCGCTTGCATCAAGGCTTGAATAGGCCGATGAGAAAAAAGCTACTG
TCAAAACTGAGCGACCTCAAGGCCTTGAAAGGGCCCGAGATTCAGCGATG
A back to topCoding sequence (CDS) from alignment at ScGOVlb_24226:330518..332818+ >Gvermi7964.t1 ID=Gvermi7964.t1|Name=Gvermi7964.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2301bp|location=Sequence derived from alignment at ScGOVlb_24226:330518..332818+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGCAGGCCCATCAAGCACGCTCACGCTTTTCGGCCGATATCCAGCGTGC CGCAGCCCTGAGAAAGGCCGGCGAGCTCGGCAAAGCGCGCGACGTGCTGC GCAAAGCCTCTGCGGACACGCGTCGCCTTGCCGCCTACCACCAAGAGCTG CTTCGCCTCACTGCAGCCCTCGTGGCGCAAACGTCCTCGGCCTCGGAGGC TGAGCGTCTGTGGCGCGCCCTCGAACCTCGTCTGTTGCACACTGGCTCGC GCCCAGATGCGGTCGCCTTCAACACCCTTTTAAGCGCGCTGCGCCTCTTA GATTCCCGAAGGCCGCCCGCAAAACGCCATGACGCCGACGCGCTGCGCAT CTTGCGCGTGGCGCACCGCGTGTTCCACATCATGGTTGAGACGGCGGTGC GCCCGGACCAGTACACTATGTCTATTTTGTTCAACATGTGTGCTTACCGT GCCAGCGGCCGCTTTGCTGCGTTGTTTGAGCAACAAGCCGTTGAGCGCTT TAACTTCAAGCCCAACATGGTGTCCGGCTCTGCCCTGCTCGCAGCTTTTG CCAAAGCAGACTCCTTGCAACAAGTTGAGCGAGTCTTCAATCTCATGCAG CAAGAACACGTTGCGCTGAACGAAAGGAGCTACACATCGATCATTTCAGC GCACTTCAAGCATGGGAAGCATGCAAAAGTGCTCAGCTACTGTGATCAAG CCATAGCTTCCACGGCCGTCACGCCGAATGTCTTTCTGTTCTCCGGCGCA TTGGCCTCTTGCCTACGCGCGTGCGATGCCGAAAATGGGCTTCGCATCTT TCAGACAATGCAGGAGAGGCAAGTACGTCCCACAGAACCCATACTTAATC TGATGCTAGAGTTAGGTGTACGGACAGGAGACTATGGCATCGGTCTCAAA TACATCACGGAATGGGCTTCGAAGCACGGTGCTGCCTGCGACGCACTTGT TTGCAACAAGATCATAGCGTCGTGGAAGAAAACGCAGCACAACGCGCCCG GTGCAATCAACGCCGTGCATCAAGTATTGCAATACTTGGAAAACAGCAGT GCCATTAAACTCGACTCCTCCACTTACAATGCGGCTTTGACAACGCTCGT TGCGCTCGGGACAATTGACCGCGTTGGGGAATTCTTGCGGCGCATGCGTG GCAGAGGGATCGTGCCAGATCTTGTGACGTACAACATTTTGATACACTCG TACGGAACAGCTGGCGACTTTGATCGGGCGCTGGGCGTTATTCACGTCAT GAAGCAGAACCACGTCCATCCGGATGTTATTACTTATAATACGCTTCTCA ACCTGCTTTTGAATTATGGAGAGGCTGATAAGGCAGAAACTCTGCTGCAA GACATGGAAAACAATGAGCACGTAGAGATGGATACGGTGAGCAGATGTAT GCAGCTAAAGTTGTACAGGATTCGAGGAAACAAACAGGCAGCGCTGCAGT TGTGTAACACAACACAACTGTTGAACGGCGCTCTTGATGCAAAGGCGCAC GGGTTGTTGCTTTCCATTCTTTTCGAGTTTGATGAAGGCAAGAAAGCCAT CTCTCTGTTCGGATGGTTGGTGTGGAAGCGCCTAGCTGCATGCGCAGCCT ATAACGTCTTGATCGACAACATCGGGAAGCGGGAAGATGGTTGCGAGCAG TGCGCAAAGCTGTTCAGCCATATGAAAAGAAAAGGGATCCCACCCGACAA GGTGACGTACTCAACGATGATTCGCGTGTTTTCGAAGAGTGGCCGACTGC GTCTCGCGTTCCGCTTGCTGAGCGAGATGCAAGATATCGGGCTAGCCATG TCGGACATGCATGCTTGGACGGCGCTGATGGACGGATGCCGAAGGTATGG ACAATGGCAGCGGGCTGTTGAGCTTCTGGCGTTCATGAAGAAGCACAGTT CGCAATCCAAACATTCGCTTGTGCCCAGCCCATCGACCGCATGCTACAAC GCAGCTCTTTACGCGGCGGGGATTGACGGCCAGGATTGGCCAAGTTGTGT GAAGATCTACGAGTCACTTCTCGCGGACAAGACGCGACGTCCGGATCATG TGACGTACTCTGCCATGGCGAGCATTATTCTAAAAAAGAGGGGTAGGATT TCGGAGTGGCACATTGTGACGCAGGTCTGCCAAGCTCTTGAGCACTTGTT GCTCGACGACGGCGAGCTATTGAAAGGTTCTGCACAGGAGTTACGGTGGC CGAAGCGCTTGCATCAAGGCTTGAATAGGCCGATGAGAAAAAAGCTACTG TCAAAACTGAGCGACCTCAAGGCCTTGAAAGGGCCCGAGATTCAGCGATG A back to top
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