Gvermi7960.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi7960.t1
Unique Name	Gvermi7960.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	380

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24226	contig	ScGOVlb_24226:313045..314184 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707024.1
PFAMs	FBPase
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00017
KEGG ko	ko:K01507,ko:K03841
KEGG Reaction	R00762,R04780
KEGG Pathway	ko00010,ko00030,ko00051,ko00190,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko04152,ko04910,map00010,map00030,map00051,map00190,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map04152,map04910
KEGG Module	M00003,M00165,M00167,M00344
Evalue	1.84e-75
EggNOG OGs	COG0158@1\|root,KOG1458@2759\|Eukaryota
EC	3.1.3.11,3.6.1.1
Description	fructose 1,6-bisphosphate 1-phosphatase activity
COG category	G
BRITE	ko00000,ko00001,ko00002,ko01000,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi7960	Gvermi7960	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24226 313045..314184 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7960.t1.start1	Gvermi7960.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24226 313045..313047 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7960.t1.CDS1	Gvermi7960.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24226 313045..314184 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7960.t1.exon1	Gvermi7960.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24226 313045..314184 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7960.t1.stop1	Gvermi7960.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24226 314182..314184 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7960.t1	Gvermi7960.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24226 313045..314184 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24226:313045..314184+
coding sequence from alignment at ScGOVlb_24226:313045..314184+

mRNA sequence

>Gvermi7960.t1 ID=Gvermi7960.t1|Name=Gvermi7960.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=380bp
MAARVPPFPRLPPTAHSPPPPPKRPKRSSVAAHPRMAAAAPPSMDIISPA
SPMGLRLSSDVSKAATVFLSHVRRTFARFPVDYTGELVRLLDDIATFTCS
ASVSYDPQAQQDTPATIKQLYRMLAADGYCCIVLAKGMDQPLTFDDSVLH
GNYVVCVSPLDMDPSGADERGIAGMVFSVYKRRSSASLPGRGIDLQQTLT
DQVAAGYAAFSSATTLYYTMGHGVYSFVLHPVALQYFLQPAMRLALPDNP
TIVYSDRAMLRSPEPIAASLAKLVDKFCCSMFTSGCLVGDVHQFLQTGGL
LVAANVHLMCEAAPFAFLVEQCGGVATDEYGTRVLDMSITEDHNVTITLV
LATPDSHNSLALQPEDPHANGIGLNGKSH*

spliced messenger RNA

>Gvermi7960.t1 ID=Gvermi7960.t1|Name=Gvermi7960.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1140bp|location=Sequence derived from alignment at ScGOVlb_24226:313045..314184+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGCCCGCGTCCCGCCTTTTCCGCGTCTGccgcccaccgcccactc
cccccccccaccccccaagcgcccaAAGCGTTCCTCCGTCGCCGCACACC
CCCGCATGGCCGCCGCTGCGCCGCCCTCCATGGACATCATCTCCCCCGCC
AGCCCCATGGGGCTGCGCCTCTCCTCCGACGTCAGCAAGGCCGCCACCGT
CTTCCTCTCCCACGTGCGCCGCACGTTTGCGCGCTTCCCCGTCGACTACA
CCGGCGAGCTCGTGCGCCTGCTGGACGACATCGCCACCTTCACCTGCTCC
GCCTCCGTCTCGTACGACCCGCAAGCGCAGCAGGACACCCCCGCCACCAT
CAAGCAGCTGTACCGCATGCTGGCCGCCGATGGCTACTGCTGTATCGTGC
TGGCAAAGGGCATGGACCAGCCCCTCACCTTTGACGACTCCGTGCTGCAC
GGCAACTACGTCGTGTGCGTGTCCCCGCTCGACATGGACCCCAGCGGTGC
CGACGAGCGCGGCATCGCCGGCATGGTCTTCTCCGTGTACAAGCGCCGCT
CGTCCGCCTCCCTGCCAGGCCGTGGAATAGACCTGCAACAGACGCTCACA
GATCAGGTCGCCGCCGGCTACGCCGCCTTCAGCTCCGCCACCACGCTGTA
CTACACCATGGGGCACGGCGTGTACTCCTTCGTGTTGCACCCGGTGGCGC
TGCAATACTTCCTGCAACCAGCCATGCGCCTGGCGCTTCCGGACAACCCC
ACCATCGTGTACAGTGACCGCGCCATGCTGCGTTCCCCGGAGCCCATTGC
CGCCTCGCTGGCAAAGCTTGTCGATAAGTTCTGTTGCTCCATGTTCACGT
CTGGTTGCCTTGTAGGCGACGTTCACCAGTTTCTGCAGACGGGCGGCTTG
CTCGTGGCCGCCAACGTTCACCTCATGTGCGAGGCCGCCCCGTTTGCATT
CCTTGTCGAGCAATGCGGCGGTGTTGCCACCGACGAGTACGGCACAAGGG
TCCTCGACATGTCCATTACAGAGGACCACAACGTCACCATCACTCTAGTT
TTGGCCACCCCTGATAGCCACAACAGCCTTGCGCTGCAGCCTGAAGACCC
CCATGCGAATGGCATTGGTCTAAATGGCAAGTCGCACTGA

protein sequence of Gvermi7960.t1

>Gvermi7960.t1 ID=Gvermi7960.t1|Name=Gvermi7960.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=380bp
MAARVPPFPRLPPTAHSPPPPPKRPKRSSVAAHPRMAAAAPPSMDIISPA
SPMGLRLSSDVSKAATVFLSHVRRTFARFPVDYTGELVRLLDDIATFTCS
ASVSYDPQAQQDTPATIKQLYRMLAADGYCCIVLAKGMDQPLTFDDSVLH
GNYVVCVSPLDMDPSGADERGIAGMVFSVYKRRSSASLPGRGIDLQQTLT
DQVAAGYAAFSSATTLYYTMGHGVYSFVLHPVALQYFLQPAMRLALPDNP
TIVYSDRAMLRSPEPIAASLAKLVDKFCCSMFTSGCLVGDVHQFLQTGGL
LVAANVHLMCEAAPFAFLVEQCGGVATDEYGTRVLDMSITEDHNVTITLV
LATPDSHNSLALQPEDPHANGIGLNGKSH*

mRNA from alignment at ScGOVlb_24226:313045..314184+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi7960.t1 ID=Gvermi7960.t1|Name=Gvermi7960.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1140bp|location=Sequence derived from alignment at ScGOVlb_24226:313045..314184+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGGCCCGCGTCCCGCCTTTTCCGCGTCTGccgcccaccgcccactc
cccccccccaccccccaagcgcccaAAGCGTTCCTCCGTCGCCGCACACC
CCCGCATGGCCGCCGCTGCGCCGCCCTCCATGGACATCATCTCCCCCGCC
AGCCCCATGGGGCTGCGCCTCTCCTCCGACGTCAGCAAGGCCGCCACCGT
CTTCCTCTCCCACGTGCGCCGCACGTTTGCGCGCTTCCCCGTCGACTACA
CCGGCGAGCTCGTGCGCCTGCTGGACGACATCGCCACCTTCACCTGCTCC
GCCTCCGTCTCGTACGACCCGCAAGCGCAGCAGGACACCCCCGCCACCAT
CAAGCAGCTGTACCGCATGCTGGCCGCCGATGGCTACTGCTGTATCGTGC
TGGCAAAGGGCATGGACCAGCCCCTCACCTTTGACGACTCCGTGCTGCAC
GGCAACTACGTCGTGTGCGTGTCCCCGCTCGACATGGACCCCAGCGGTGC
CGACGAGCGCGGCATCGCCGGCATGGTCTTCTCCGTGTACAAGCGCCGCT
CGTCCGCCTCCCTGCCAGGCCGTGGAATAGACCTGCAACAGACGCTCACA
GATCAGGTCGCCGCCGGCTACGCCGCCTTCAGCTCCGCCACCACGCTGTA
CTACACCATGGGGCACGGCGTGTACTCCTTCGTGTTGCACCCGGTGGCGC
TGCAATACTTCCTGCAACCAGCCATGCGCCTGGCGCTTCCGGACAACCCC
ACCATCGTGTACAGTGACCGCGCCATGCTGCGTTCCCCGGAGCCCATTGC
CGCCTCGCTGGCAAAGCTTGTCGATAAGTTCTGTTGCTCCATGTTCACGT
CTGGTTGCCTTGTAGGCGACGTTCACCAGTTTCTGCAGACGGGCGGCTTG
CTCGTGGCCGCCAACGTTCACCTCATGTGCGAGGCCGCCCCGTTTGCATT
CCTTGTCGAGCAATGCGGCGGTGTTGCCACCGACGAGTACGGCACAAGGG
TCCTCGACATGTCCATTACAGAGGACCACAACGTCACCATCACTCTAGTT
TTGGCCACCCCTGATAGCCACAACAGCCTTGCGCTGCAGCCTGAAGACCC
CCATGCGAATGGCATTGGTCTAAATGGCAAGTCGCACTGA

Coding sequence (CDS) from alignment at ScGOVlb_24226:313045..314184+

>Gvermi7960.t1 ID=Gvermi7960.t1|Name=Gvermi7960.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1140bp|location=Sequence derived from alignment at ScGOVlb_24226:313045..314184+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGGCCCGCGTCCCGCCTTTTCCGCGTCTGccgcccaccgcccactc
cccccccccaccccccaagcgcccaAAGCGTTCCTCCGTCGCCGCACACC
CCCGCATGGCCGCCGCTGCGCCGCCCTCCATGGACATCATCTCCCCCGCC
AGCCCCATGGGGCTGCGCCTCTCCTCCGACGTCAGCAAGGCCGCCACCGT
CTTCCTCTCCCACGTGCGCCGCACGTTTGCGCGCTTCCCCGTCGACTACA
CCGGCGAGCTCGTGCGCCTGCTGGACGACATCGCCACCTTCACCTGCTCC
GCCTCCGTCTCGTACGACCCGCAAGCGCAGCAGGACACCCCCGCCACCAT
CAAGCAGCTGTACCGCATGCTGGCCGCCGATGGCTACTGCTGTATCGTGC
TGGCAAAGGGCATGGACCAGCCCCTCACCTTTGACGACTCCGTGCTGCAC
GGCAACTACGTCGTGTGCGTGTCCCCGCTCGACATGGACCCCAGCGGTGC
CGACGAGCGCGGCATCGCCGGCATGGTCTTCTCCGTGTACAAGCGCCGCT
CGTCCGCCTCCCTGCCAGGCCGTGGAATAGACCTGCAACAGACGCTCACA
GATCAGGTCGCCGCCGGCTACGCCGCCTTCAGCTCCGCCACCACGCTGTA
CTACACCATGGGGCACGGCGTGTACTCCTTCGTGTTGCACCCGGTGGCGC
TGCAATACTTCCTGCAACCAGCCATGCGCCTGGCGCTTCCGGACAACCCC
ACCATCGTGTACAGTGACCGCGCCATGCTGCGTTCCCCGGAGCCCATTGC
CGCCTCGCTGGCAAAGCTTGTCGATAAGTTCTGTTGCTCCATGTTCACGT
CTGGTTGCCTTGTAGGCGACGTTCACCAGTTTCTGCAGACGGGCGGCTTG
CTCGTGGCCGCCAACGTTCACCTCATGTGCGAGGCCGCCCCGTTTGCATT
CCTTGTCGAGCAATGCGGCGGTGTTGCCACCGACGAGTACGGCACAAGGG
TCCTCGACATGTCCATTACAGAGGACCACAACGTCACCATCACTCTAGTT
TTGGCCACCCCTGATAGCCACAACAGCCTTGCGCTGCAGCCTGAAGACCC
CCATGCGAATGGCATTGGTCTAAATGGCAAGTCGCACTGA