Gvermi7958.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7958.t1
Unique NameGvermi7958.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length205
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:307772..308386 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog77586.LPERR03G15150.1
Preferred nameDVR
PFAMsNAD_binding_10
Max annot lvl35493|Streptophyta
KEGG rclassRC01376
KEGG koko:K19073
KEGG ReactionR06272,R06896
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009507,GO:0009526,GO:0009534,GO:0009536,GO:0009579,GO:0009941,GO:0009987,GO:0015994,GO:0015995,GO:0016020,GO:0016491,GO:0018130,GO:0019438,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0033013,GO:0033014,GO:0034641,GO:0042440,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044271,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0051744,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue4.84e-71
EggNOG OGsCOG0702@1|root,KOG1203@2759|Eukaryota,37N31@33090|Viridiplantae,3G9Z4@35493|Streptophyta,3KRY2@4447|Liliopsida,3I3U5@38820|Poales
EC1.3.1.75
DescriptionCatalyzes the conversion of divinyl chlorophyllide to monovinyl chlorophyllide. Reduces the 8-vinyl group of the tetrapyrrole to an ethyl group using NADPH as the reductant. Can use (3,8-divinyl)-chlorophyllide a (DV-Chlidea) (3,8-divinyl)- chlorophyll a (DV-Chla) (3,8-divinyl)-protochlorophyllide a (DV- Pchlidea) (3,8-divinyl)-magnesium-protoporphyrin IX monomethyl ester (DV-MPE) (3,8-divinyl)-magnesium-protoporphyrin IX (DV-Mg- Proto) as substrates
COG categoryG
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7958Gvermi7958Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 307772..308386 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7958.t1.start1Gvermi7958.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 307772..307774 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7958.t1.CDS1Gvermi7958.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 307772..308386 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7958.t1.exon1Gvermi7958.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 307772..308386 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7958.t1.stop1Gvermi7958.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 308384..308386 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7958.t1Gvermi7958.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 307772..308386 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7958.t1 ID=Gvermi7958.t1|Name=Gvermi7958.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=205bp
LLSAVCVQKPQLEFQRAKLLLEAELQRAAARDAAFSFSIVRPTAFFKSLA
AQVPRVARGAPYLVFGDGRLSRCNAISERDLARFIALCARDADKRNRVLR
VGGPGAPLTPRQQAELLFRAAGRPPRFQALPLALMDAAVAALSALERVAP
FLADAAEFARIGRYYAVEDMVAPPFGSDTLESFFARAVRDGGMDGQDLGD
AAIF*
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spliced messenger RNA

>Gvermi7958.t1 ID=Gvermi7958.t1|Name=Gvermi7958.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=615bp|location=Sequence derived from alignment at ScGOVlb_24226:307772..308386+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ctgcTGTCCGCCGTGTGCGTGCAAAAGCCGCAGCTCGAGTTCCAGCGCGC
CAAGCTGCTGCTGGAGGCCGAGCTGCAGCGCGCCGCCGCGCGCGACGCCG
CCTTCAGCTTCTCCATCGTGCGCCCCACCGCCTTCTTCAAGTCGCTGGCC
GCGCAGGTGCCGCGCGTGGCGCGCGGCGCCCCGTACCTCGTCTTCGGCGA
CGGCCGCCTGTCGCGCTGCAACGCCATCTCGGAGCGCGACCTGGCGCGCT
TCATCGCCCTGTGCGCGCGCGACGCCGACAAGCGCAACCGCGTGCTGCGC
GTGGGCGGCCCCGGCGCCCCGCTCACCCCGCGCCAGCAGGCCGAGCTGCT
CTTCCGCGCCGCGGGGCGCCCCCCGCGCTTCCAGGCCCTCCCGCTCGCGC
TCATGGAcgccgccgtcgccgcgctctccgcgctggagcgcgtcgccccg
ttcctcgccgacgccgccgAGTTTGCGCGCATCGGCCGCTACTACGCCGT
CGAGGACATGGTCGCCCCGCCGTTCGGCTCCGACACGCTGGAGAGCTTTT
TCGCCCGCGCCGTGCGCGACGGCGGCATGGACGGCCAGGACCTGGGCGAC
GCCGCCATCTTTTAG
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protein sequence of Gvermi7958.t1

>Gvermi7958.t1 ID=Gvermi7958.t1|Name=Gvermi7958.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=205bp
LLSAVCVQKPQLEFQRAKLLLEAELQRAAARDAAFSFSIVRPTAFFKSLA
AQVPRVARGAPYLVFGDGRLSRCNAISERDLARFIALCARDADKRNRVLR
VGGPGAPLTPRQQAELLFRAAGRPPRFQALPLALMDAAVAALSALERVAP
FLADAAEFARIGRYYAVEDMVAPPFGSDTLESFFARAVRDGGMDGQDLGD
AAIF*
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mRNA from alignment at ScGOVlb_24226:307772..308386+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7958.t1 ID=Gvermi7958.t1|Name=Gvermi7958.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=615bp|location=Sequence derived from alignment at ScGOVlb_24226:307772..308386+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ctgcTGTCCGCCGTGTGCGTGCAAAAGCCGCAGCTCGAGTTCCAGCGCGC
CAAGCTGCTGCTGGAGGCCGAGCTGCAGCGCGCCGCCGCGCGCGACGCCG
CCTTCAGCTTCTCCATCGTGCGCCCCACCGCCTTCTTCAAGTCGCTGGCC
GCGCAGGTGCCGCGCGTGGCGCGCGGCGCCCCGTACCTCGTCTTCGGCGA
CGGCCGCCTGTCGCGCTGCAACGCCATCTCGGAGCGCGACCTGGCGCGCT
TCATCGCCCTGTGCGCGCGCGACGCCGACAAGCGCAACCGCGTGCTGCGC
GTGGGCGGCCCCGGCGCCCCGCTCACCCCGCGCCAGCAGGCCGAGCTGCT
CTTCCGCGCCGCGGGGCGCCCCCCGCGCTTCCAGGCCCTCCCGCTCGCGC
TCATGGAcgccgccgtcgccgcgctctccgcgctggagcgcgtcgccccg
ttcctcgccgacgccgccgAGTTTGCGCGCATCGGCCGCTACTACGCCGT
CGAGGACATGGTCGCCCCGCCGTTCGGCTCCGACACGCTGGAGAGCTTTT
TCGCCCGCGCCGTGCGCGACGGCGGCATGGACGGCCAGGACCTGGGCGAC
GCCGCCATCTTTTAG
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Coding sequence (CDS) from alignment at ScGOVlb_24226:307772..308386+

>Gvermi7958.t1 ID=Gvermi7958.t1|Name=Gvermi7958.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=615bp|location=Sequence derived from alignment at ScGOVlb_24226:307772..308386+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ctgcTGTCCGCCGTGTGCGTGCAAAAGCCGCAGCTCGAGTTCCAGCGCGC
CAAGCTGCTGCTGGAGGCCGAGCTGCAGCGCGCCGCCGCGCGCGACGCCG
CCTTCAGCTTCTCCATCGTGCGCCCCACCGCCTTCTTCAAGTCGCTGGCC
GCGCAGGTGCCGCGCGTGGCGCGCGGCGCCCCGTACCTCGTCTTCGGCGA
CGGCCGCCTGTCGCGCTGCAACGCCATCTCGGAGCGCGACCTGGCGCGCT
TCATCGCCCTGTGCGCGCGCGACGCCGACAAGCGCAACCGCGTGCTGCGC
GTGGGCGGCCCCGGCGCCCCGCTCACCCCGCGCCAGCAGGCCGAGCTGCT
CTTCCGCGCCGCGGGGCGCCCCCCGCGCTTCCAGGCCCTCCCGCTCGCGC
TCATGGAcgccgccgtcgccgcgctctccgcgctggagcgcgtcgccccg
ttcctcgccgacgccgccgAGTTTGCGCGCATCGGCCGCTACTACGCCGT
CGAGGACATGGTCGCCCCGCCGTTCGGCTCCGACACGCTGGAGAGCTTTT
TCGCCCGCGCCGTGCGCGACGGCGGCATGGACGGCCAGGACCTGGGCGAC
GCCGCCATCTTTTAG
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