Gvermi7955.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7955.t1
Unique NameGvermi7955.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length215
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:301576..302420 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708023.1
PFAMsRas
Max annot lvl2759|Eukaryota
KEGG koko:K07904,ko:K07905
KEGG Pathwayko04144,ko04152,ko04961,ko04962,ko04972,map04144,map04152,map04961,map04962,map04972
Evalue8.06e-105
EggNOG OGsCOG1100@1|root,KOG0087@2759|Eukaryota
DescriptionGTPase activity
COG categoryJ
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7955Gvermi7955Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 301576..302420 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7955.t1Gvermi7955.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 301576..302420 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7955.t1.stop1Gvermi7955.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 301576..301578 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7955.t1.CDS1Gvermi7955.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 301576..302152 -
Gvermi7955.t1.CDS2Gvermi7955.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 302249..302291 -
Gvermi7955.t1.CDS3Gvermi7955.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 302396..302420 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7955.t1.exon1Gvermi7955.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 301576..302152 -
Gvermi7955.t1.exon2Gvermi7955.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 302249..302291 -
Gvermi7955.t1.exon3Gvermi7955.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 302396..302420 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7955.t1.intron1Gvermi7955.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 302153..302248 -
Gvermi7955.t1.intron2Gvermi7955.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 302292..302395 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7955.t1.start1Gvermi7955.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 302418..302420 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7955.t1 ID=Gvermi7955.t1|Name=Gvermi7955.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=215bp
MARSEDEYDYLFKVVLIGDAGVGKSNLLSRFTRNEFSLESKSTIGVEFAT
RSIQCEGKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKDSFE
NVQRWLKELKDHADANIVIMLVGNKSDLQHLKAVTTDDASAFSQDNALSF
IETSALDNNNVEEAFRSILSEIYRLGSKKVLEKGAGGDFAPNATQTIVIN
PPTDEAKTEKAKCC*
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spliced messenger RNA

>Gvermi7955.t1 ID=Gvermi7955.t1|Name=Gvermi7955.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=645bp|location=Sequence derived from alignment at ScGOVlb_24226:301576..302420- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCGCTCCGAAGACGAGTACGACTACCTGTTCAAGGTCGTGCTCAT
CGGCGATGCGGGTGTCGGCAAGTCCAACCTGCTGAGCCGCTTCACGCGCA
ACGAGTTCAGCCTCGAGTCCAAGTCCACCATCGGCGTCGAGTTCGCCACG
CGCTCCATCCAGTGCGAGGGCAAGATCATCAAGGCGCAGATCTGGGACAC
GGCCGGCCAGGAGCGCTACCGCGCCATCACCTCCGCCTACTACCGCGGCG
CCGTCGGCGCGCTGCTCGTGTACGACATCACCAAGAAGGACTCGTTCGAA
AACGTCCAGCGCTGGCTCAAGGAGCTCAAGGACCACGCCGACGCCAACAT
TGTCATCATGCTCGTCGGCAACAAGAGCGACCTGCAGCACCTCAAGGCCG
TCACCACCGACGACGCCTCCGCCTTCTCGCAGGACAACGCCCTCAGCTTC
ATCGAGACCTCCGCCCTGGACAACAACAACGTCGAGGAGGCCTTCCGCTC
CATCCTGTCCGAGATCTACCGACTGGGCTCCAAGAAGGTGCTTGAGAAGG
GCGCCGGCGGCGACTTTGCGCCCAACGCCACCCAGACCATTGTCATCAAC
CCCCCGACCGACGAAGCCAAGACCGAAAAGGCCAAGTGCTGCTAG
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protein sequence of Gvermi7955.t1

>Gvermi7955.t1 ID=Gvermi7955.t1|Name=Gvermi7955.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=215bp
MARSEDEYDYLFKVVLIGDAGVGKSNLLSRFTRNEFSLESKSTIGVEFAT
RSIQCEGKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKDSFE
NVQRWLKELKDHADANIVIMLVGNKSDLQHLKAVTTDDASAFSQDNALSF
IETSALDNNNVEEAFRSILSEIYRLGSKKVLEKGAGGDFAPNATQTIVIN
PPTDEAKTEKAKCC*
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mRNA from alignment at ScGOVlb_24226:301576..302420-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7955.t1 ID=Gvermi7955.t1|Name=Gvermi7955.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=845bp|location=Sequence derived from alignment at ScGOVlb_24226:301576..302420- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCGCTCCGAAGACGAGTACGGTACGTGCCGCGCGCGCTCTGCCCT
TTCCCCCCGCGCCGCCGCCGCCGCCGCCGCCCGCCTGCTCACCGCCGCGA
GAGCGCCTTTCTCGCGCGCCGCCCCGCAGACTACCTGTTCAAGGTCGTGC
TCATCGGCGATGCGGGTGTCGGGTAAGTTCCAGTCCTTGTCGCCGCCGCC
GCCGCCGCCGCCGCCTGCTAACCGCCCGCGTCCCGCCGCGTCGCGCCGCG
TGCCGCGCCGCCGCGCAGCAAGTCCAACCTGCTGAGCCGCTTCACGCGCA
ACGAGTTCAGCCTCGAGTCCAAGTCCACCATCGGCGTCGAGTTCGCCACG
CGCTCCATCCAGTGCGAGGGCAAGATCATCAAGGCGCAGATCTGGGACAC
GGCCGGCCAGGAGCGCTACCGCGCCATCACCTCCGCCTACTACCGCGGCG
CCGTCGGCGCGCTGCTCGTGTACGACATCACCAAGAAGGACTCGTTCGAA
AACGTCCAGCGCTGGCTCAAGGAGCTCAAGGACCACGCCGACGCCAACAT
TGTCATCATGCTCGTCGGCAACAAGAGCGACCTGCAGCACCTCAAGGCCG
TCACCACCGACGACGCCTCCGCCTTCTCGCAGGACAACGCCCTCAGCTTC
ATCGAGACCTCCGCCCTGGACAACAACAACGTCGAGGAGGCCTTCCGCTC
CATCCTGTCCGAGATCTACCGACTGGGCTCCAAGAAGGTGCTTGAGAAGG
GCGCCGGCGGCGACTTTGCGCCCAACGCCACCCAGACCATTGTCATCAAC
CCCCCGACCGACGAAGCCAAGACCGAAAAGGCCAAGTGCTGCTAG
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Coding sequence (CDS) from alignment at ScGOVlb_24226:301576..302420-

>Gvermi7955.t1 ID=Gvermi7955.t1|Name=Gvermi7955.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=645bp|location=Sequence derived from alignment at ScGOVlb_24226:301576..302420- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCGCTCCGAAGACGAGTACGACTACCTGTTCAAGGTCGTGCTCAT
CGGCGATGCGGGTGTCGGCAAGTCCAACCTGCTGAGCCGCTTCACGCGCA
ACGAGTTCAGCCTCGAGTCCAAGTCCACCATCGGCGTCGAGTTCGCCACG
CGCTCCATCCAGTGCGAGGGCAAGATCATCAAGGCGCAGATCTGGGACAC
GGCCGGCCAGGAGCGCTACCGCGCCATCACCTCCGCCTACTACCGCGGCG
CCGTCGGCGCGCTGCTCGTGTACGACATCACCAAGAAGGACTCGTTCGAA
AACGTCCAGCGCTGGCTCAAGGAGCTCAAGGACCACGCCGACGCCAACAT
TGTCATCATGCTCGTCGGCAACAAGAGCGACCTGCAGCACCTCAAGGCCG
TCACCACCGACGACGCCTCCGCCTTCTCGCAGGACAACGCCCTCAGCTTC
ATCGAGACCTCCGCCCTGGACAACAACAACGTCGAGGAGGCCTTCCGCTC
CATCCTGTCCGAGATCTACCGACTGGGCTCCAAGAAGGTGCTTGAGAAGG
GCGCCGGCGGCGACTTTGCGCCCAACGCCACCCAGACCATTGTCATCAAC
CCCCCGACCGACGAAGCCAAGACCGAAAAGGCCAAGTGCTGCTAG
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