Gvermi7942.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7942.t1
Unique NameGvermi7942.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length291
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:237095..237967 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7070.TC014454-PA
Preferred nameTHG1L
PFAMsThg1,Thg1C
Max annot lvl33208|Metazoa
KEGG koko:K10761
GOsGO:0000049,GO:0000166,GO:0000287,GO:0000966,GO:0001882,GO:0001883,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008144,GO:0008150,GO:0008152,GO:0008192,GO:0008193,GO:0009451,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0017076,GO:0019001,GO:0022607,GO:0030554,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032559,GO:0032561,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0065003,GO:0070568,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097367,GO:0099116,GO:1901265,GO:1901360,GO:1901363
Evalue3.66e-90
EggNOG OGsCOG4021@1|root,KOG2721@2759|Eukaryota,38EX4@33154|Opisthokonta,3BC5R@33208|Metazoa,3CSAP@33213|Bilateria,41UU4@6656|Arthropoda,3SIP8@50557|Insecta
EC2.7.7.79
DescriptionAdds a GMP to the 5'-end of tRNA(His) after transcription and RNase P cleavage
COG categoryS
BRITEko00000,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7942Gvermi7942Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 237095..237967 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7942.t1.stop1Gvermi7942.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 237095..237097 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7942.t1.CDS1Gvermi7942.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 237095..237967 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7942.t1.exon1Gvermi7942.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 237095..237967 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7942.t1.start1Gvermi7942.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 237965..237967 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7942.t1Gvermi7942.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 237095..237967 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7942.t1 ID=Gvermi7942.t1|Name=Gvermi7942.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=291bp
MACSRFEYVKCFENYQRLLPGCWSVIRLDGRCFTSFAKKHSFRKPNDERA
LNLMNTAATCVLSAFDNHLVLAYGQSDEYSFIMKRESNLFSRRESKILST
VVSMFTSAYVMNWKHHMDVDLNEPPTFDARIVLYPTTKHLRDYLAWRQAD
VHVNNLFNTTFWALVNQGGLSLQEAERLLKGTIAKEKNEILFSRFNINYN
NEPLMFRKGSAIIRKSAADQQTLLKRRRLEASPSEQQSIDTDVSPEMKTH
NVSETQFEVHHVDIIKDEFWEKNPSLLWPPDDSPPRLRKK*
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spliced messenger RNA

>Gvermi7942.t1 ID=Gvermi7942.t1|Name=Gvermi7942.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=873bp|location=Sequence derived from alignment at ScGOVlb_24226:237095..237967- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATGTTCTCGATTTGAGTACGTCAAATGCTTCGAAAATTATCAACG
TCTTCTGCCTGGCTGTTGGTCCGTAATTCGTCTCGATGGTCGATGTTTCA
CTTCCTTTGCCAAGAAGCACTCGTTTCGAAAACCGAATGACGAGAGGGCT
TTAAATCTAATGAACACAGCGGCAACTTGCGTTTTAAGCGCTTTTGATAA
CCATCTTGTGCTAGCCTACGGACAGAGTGATGAATACAGCTTCATCATGA
AGCGCGAGTCTAATTTGTTCTCCAGAAGAGAAAGCAAGATTCTTTCCACG
GTGGTTTCAATGTTTACCTCGGCATACGTCATGAATTGGAAACATCATAT
GGATGTTGATTTAAACGAGCCACCTACATTTGATGCTCGAATCGTCTTGT
ATCCGACCACGAAGCACTTACGGGATTATCTGGCATGGCGTCAGGCAGAT
GTGCATGTTAACAATCTCTTCAATACCACTTTTTGGGCGCTCGTAAATCA
AGGCGGCTTGTCCCTACAAGAAGCGGAAAGATTACTGAAGGGCACCATCG
CGAAAGAGAAGAATGAGATACTATTCTCGCGGTTTAACATTAACTACAAC
AACGAGCCTTTAATGTTTCGAAAAGGATCCGCGATCATTCGAAAATCAGC
CGCAGATCAACAGACTTTGCTAAAACGAAGACGTTTAGAAGCAAGTCCAA
GTGAACAGCAAAGCATTGATACCGATGTCAGTCCAGAGATGAAAACGCAT
AATGTATCCGAGACACAATTTGAGGTACATCACGTCGACATCATCAAAGA
TGAGTTTTGGGAGAAGAATCCTAGTCTTCTATGGCCTCCAGATGACTCTC
CTCCGAGATTACGCAAGAAATGA
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protein sequence of Gvermi7942.t1

>Gvermi7942.t1 ID=Gvermi7942.t1|Name=Gvermi7942.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=291bp
MACSRFEYVKCFENYQRLLPGCWSVIRLDGRCFTSFAKKHSFRKPNDERA
LNLMNTAATCVLSAFDNHLVLAYGQSDEYSFIMKRESNLFSRRESKILST
VVSMFTSAYVMNWKHHMDVDLNEPPTFDARIVLYPTTKHLRDYLAWRQAD
VHVNNLFNTTFWALVNQGGLSLQEAERLLKGTIAKEKNEILFSRFNINYN
NEPLMFRKGSAIIRKSAADQQTLLKRRRLEASPSEQQSIDTDVSPEMKTH
NVSETQFEVHHVDIIKDEFWEKNPSLLWPPDDSPPRLRKK*
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mRNA from alignment at ScGOVlb_24226:237095..237967-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7942.t1 ID=Gvermi7942.t1|Name=Gvermi7942.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=873bp|location=Sequence derived from alignment at ScGOVlb_24226:237095..237967- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCATGTTCTCGATTTGAGTACGTCAAATGCTTCGAAAATTATCAACG
TCTTCTGCCTGGCTGTTGGTCCGTAATTCGTCTCGATGGTCGATGTTTCA
CTTCCTTTGCCAAGAAGCACTCGTTTCGAAAACCGAATGACGAGAGGGCT
TTAAATCTAATGAACACAGCGGCAACTTGCGTTTTAAGCGCTTTTGATAA
CCATCTTGTGCTAGCCTACGGACAGAGTGATGAATACAGCTTCATCATGA
AGCGCGAGTCTAATTTGTTCTCCAGAAGAGAAAGCAAGATTCTTTCCACG
GTGGTTTCAATGTTTACCTCGGCATACGTCATGAATTGGAAACATCATAT
GGATGTTGATTTAAACGAGCCACCTACATTTGATGCTCGAATCGTCTTGT
ATCCGACCACGAAGCACTTACGGGATTATCTGGCATGGCGTCAGGCAGAT
GTGCATGTTAACAATCTCTTCAATACCACTTTTTGGGCGCTCGTAAATCA
AGGCGGCTTGTCCCTACAAGAAGCGGAAAGATTACTGAAGGGCACCATCG
CGAAAGAGAAGAATGAGATACTATTCTCGCGGTTTAACATTAACTACAAC
AACGAGCCTTTAATGTTTCGAAAAGGATCCGCGATCATTCGAAAATCAGC
CGCAGATCAACAGACTTTGCTAAAACGAAGACGTTTAGAAGCAAGTCCAA
GTGAACAGCAAAGCATTGATACCGATGTCAGTCCAGAGATGAAAACGCAT
AATGTATCCGAGACACAATTTGAGGTACATCACGTCGACATCATCAAAGA
TGAGTTTTGGGAGAAGAATCCTAGTCTTCTATGGCCTCCAGATGACTCTC
CTCCGAGATTACGCAAGAAATGA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:237095..237967-

>Gvermi7942.t1 ID=Gvermi7942.t1|Name=Gvermi7942.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=873bp|location=Sequence derived from alignment at ScGOVlb_24226:237095..237967- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCATGTTCTCGATTTGAGTACGTCAAATGCTTCGAAAATTATCAACG
TCTTCTGCCTGGCTGTTGGTCCGTAATTCGTCTCGATGGTCGATGTTTCA
CTTCCTTTGCCAAGAAGCACTCGTTTCGAAAACCGAATGACGAGAGGGCT
TTAAATCTAATGAACACAGCGGCAACTTGCGTTTTAAGCGCTTTTGATAA
CCATCTTGTGCTAGCCTACGGACAGAGTGATGAATACAGCTTCATCATGA
AGCGCGAGTCTAATTTGTTCTCCAGAAGAGAAAGCAAGATTCTTTCCACG
GTGGTTTCAATGTTTACCTCGGCATACGTCATGAATTGGAAACATCATAT
GGATGTTGATTTAAACGAGCCACCTACATTTGATGCTCGAATCGTCTTGT
ATCCGACCACGAAGCACTTACGGGATTATCTGGCATGGCGTCAGGCAGAT
GTGCATGTTAACAATCTCTTCAATACCACTTTTTGGGCGCTCGTAAATCA
AGGCGGCTTGTCCCTACAAGAAGCGGAAAGATTACTGAAGGGCACCATCG
CGAAAGAGAAGAATGAGATACTATTCTCGCGGTTTAACATTAACTACAAC
AACGAGCCTTTAATGTTTCGAAAAGGATCCGCGATCATTCGAAAATCAGC
CGCAGATCAACAGACTTTGCTAAAACGAAGACGTTTAGAAGCAAGTCCAA
GTGAACAGCAAAGCATTGATACCGATGTCAGTCCAGAGATGAAAACGCAT
AATGTATCCGAGACACAATTTGAGGTACATCACGTCGACATCATCAAAGA
TGAGTTTTGGGAGAAGAATCCTAGTCTTCTATGGCCTCCAGATGACTCTC
CTCCGAGATTACGCAAGAAATGA
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