Gvermi7939.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7939.t1
Unique NameGvermi7939.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length160
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:230549..232609 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMJ211CT
Preferred nameNDUFS2
PFAMsComplex1_49kDa
Max annot lvl2759|Eukaryota
KEGG rclassRC00061
KEGG koko:K03935,ko:K06669
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko04110,ko04111,ko04113,ko04114,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04110,map04111,map04113,map04114,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00143
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0005759,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0008137,GO:0008150,GO:0008152,GO:0009055,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0010257,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0019899,GO:0022607,GO:0022900,GO:0022904,GO:0030964,GO:0031090,GO:0031625,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032981,GO:0032991,GO:0033108,GO:0034622,GO:0034641,GO:0042221,GO:0042493,GO:0042773,GO:0042775,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0050896,GO:0055086,GO:0055114,GO:0065003,GO:0070013,GO:0070469,GO:0071704,GO:0071840,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
Evalue3.48e-18
EggNOG OGsCOG0649@1|root,KOG2870@2759|Eukaryota
EC1.6.5.3,1.6.99.3
Descriptionquinone binding
COG categoryC
BRITEko00000,ko00001,ko00002,ko00535,ko01000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7939Gvermi7939Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 230549..232609 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7939.t1.stop1Gvermi7939.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 230549..230551 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7939.t1.CDS1Gvermi7939.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 230549..230556 -
Gvermi7939.t1.CDS2Gvermi7939.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 230896..230910 -
Gvermi7939.t1.CDS3Gvermi7939.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 231690..231702 -
Gvermi7939.t1.CDS4Gvermi7939.t1.CDS4Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 231796..231837 -
Gvermi7939.t1.CDS5Gvermi7939.t1.CDS5Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 232030..232097 -
Gvermi7939.t1.CDS6Gvermi7939.t1.CDS6Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 232198..232261 -
Gvermi7939.t1.CDS7Gvermi7939.t1.CDS7Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 232340..232609 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7939.t1.exon1Gvermi7939.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 230549..230556 -
Gvermi7939.t1.exon2Gvermi7939.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 230896..230910 -
Gvermi7939.t1.exon3Gvermi7939.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 231690..231702 -
Gvermi7939.t1.exon4Gvermi7939.t1.exon4Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 231796..231837 -
Gvermi7939.t1.exon5Gvermi7939.t1.exon5Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 232030..232097 -
Gvermi7939.t1.exon6Gvermi7939.t1.exon6Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 232198..232261 -
Gvermi7939.t1.exon7Gvermi7939.t1.exon7Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 232340..232609 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7939.t1.intron1Gvermi7939.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 230557..230895 -
Gvermi7939.t1.intron2Gvermi7939.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 230911..231689 -
Gvermi7939.t1.intron3Gvermi7939.t1.intron3Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 231703..231795 -
Gvermi7939.t1.intron4Gvermi7939.t1.intron4Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 231838..232029 -
Gvermi7939.t1.intron5Gvermi7939.t1.intron5Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 232098..232197 -
Gvermi7939.t1.intron6Gvermi7939.t1.intron6Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 232262..232339 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7939.t1.start1Gvermi7939.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 232607..232609 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7939.t1Gvermi7939.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 230549..232609 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7939.t1 ID=Gvermi7939.t1|Name=Gvermi7939.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=160bp
MLRAFSSRLASVSHASCSNVRALATRGGQLASVGSPQKLDPHYIDSAVNA
VAGDVHLDQLEPHELSRMRADREKQLDIRNFTLNFGPQHPKHNFNHSRTA
TCDASMSLLLKAAHGVLRLVLELDGEVAVKLDPHITRILNHLLAVGCHGM
DVGYSIVRG*
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spliced messenger RNA

>Gvermi7939.t1 ID=Gvermi7939.t1|Name=Gvermi7939.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=480bp|location=Sequence derived from alignment at ScGOVlb_24226:230549..232609- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCGAGCTTTTTCCTCTCGTCTTGCTTCCGTCTCTCATGCAAGCTG
CTCTAATGTGCGCGCGCTGGCTACGCGAGGCGGGCAGCTCGCGTCTGTAG
GCTCCCCGCAGAAGCTGGACCCTCATTACATCGACTCTGCGGTGAACGCG
GTCGCTGGTGATGTTCATCTTGATCAACTGGAGCCTCACGAACTTTCCCG
CATGCGAGCTGATCGAGAGAAACAACTCGATATCCGAAACTTCACTCTTA
ATTTTGGTCCGCAGCATCCGAAGCATAATTTCAATCATTCCCGTACGGCC
ACTTGCGATGCGTCAATGTCGTTATTACTGAAGGCTGCTCATGGAGTTCT
CCGCCTCGTGCTGGAACTTGATGGCGAAGTCGCCGTCAAACTAGACCCAC
ACATTACTCGCATTCTTAACCATCTTCTTGCTGTCGGATGTCATGGAATG
GATGTGGGATATAGTATTGTAAGAGGTTGA
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protein sequence of Gvermi7939.t1

>Gvermi7939.t1 ID=Gvermi7939.t1|Name=Gvermi7939.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=160bp
MLRAFSSRLASVSHASCSNVRALATRGGQLASVGSPQKLDPHYIDSAVNA
VAGDVHLDQLEPHELSRMRADREKQLDIRNFTLNFGPQHPKHNFNHSRTA
TCDASMSLLLKAAHGVLRLVLELDGEVAVKLDPHITRILNHLLAVGCHGM
DVGYSIVRG*
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mRNA from alignment at ScGOVlb_24226:230549..232609-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7939.t1 ID=Gvermi7939.t1|Name=Gvermi7939.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2061bp|location=Sequence derived from alignment at ScGOVlb_24226:230549..232609- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTGCGAGCTTTTTCCTCTCGTCTTGCTTCCGTCTCTCATGCAAGCTG
CTCTAATGTGCGCGCGCTGGCTACGCGAGGCGGGCAGCTCGCGTCTGTAG
GCTCCCCGCAGAAGCTGGACCCTCATTACATCGACTCTGCGGTGAACGCG
GTCGCTGGTGATGTTCATCTTGATCAACTGGAGCCTCACGAACTTTCCCG
CATGCGAGCTGATCGAGAGAAACAACTCGATATCCGAAACTTCACTCTTA
ATTTTGGTCCGCAGCATCCGGTACGTAACCCCTCGTCGGCAAAGCTGCAT
GGGCTCTTCTCATGGTGCGTTCTCAGTGGTCTGCCAGCTGCTAACTAGAA
GCATAATTTCAATCATTCCCGTACGGCCACTTGCGATGCGTCAATGTCGT
TATTACTGAAGGGTAAGTTGCGAACTTCTGCAATTATTCCATGCGCACCG
AGCAATCCTCCTATTCGCCAAGCATTCATCAGGCTGACAGACTTCTCACC
TTCCGATTACAGCTGCTCATGGAGTTCTCCGCCTCGTGCTGGAACTTGAT
GGCGAAGTCGCCGTCAAACTAGACCCACACGTCGGTCTTCTACATCGCGG
TACGGAAAAACTCATTGAGTATAAAACCTACCTTCAAGCGCTTCCGTATT
TCGATCGTTTGGACTATGTGTCCATGATGGCTCAGGAGCAATGCTACTCT
CTGGCTGTTGAAAAACTGCTCAAGATTGAAGTTCCGTTACGCGCCAAGTA
TATCCGAACGCTTTTCGCGGAGATTACTCGCATTCTTAACCATCTTCTTG
CTGTCGGATGTCATGTACGTATGCCCTGAATCGATGTATAACCTCAAAAC
AACACATGCTTAAACCGCCTCGTCTGACATTGCCCCCCGACTTTATTTGA
CGTGCAGGGAATGGATGTGGGTGCTTTAACTCCGTTTCTATGGGCCTTTG
AAGAACGAGAGAAGCTCATGGAATTCTACGAACGCGTCTCCGGGGCTCGT
TTACATTCTGCCTACGTTAGGCCAGGCGGCGTTGCTCAAGACATTCCACT
CGGTCTCATGGACGACATTTATGGTTTCTGCAAGTCTTTCGTCTCTCGAA
TCGATGAAATTGAGGAGATGCTTACTGGAAATCGTATCTGGAAGCAAAGA
CTTGTTGACATCGGTGTCGTGACTGCTGCGCAGGCCCTTGACTGGGGATT
CTCAGGACCGATGCTTCGGGGATCTGGCGTATCGTGGGATTTGCGAAAGG
CTCAACCGTACGATGCCTATGAATTTGTTAATTTCAAGATTCCAGTTGGC
ATCAACGGTGACTGCTACGACCGTTATCTCATCCGGGTGGAAGAAATGAG
ACAGTCTCTGGATATCATTGTGCAATGCCTTAACCAAATGCCTGAAGGGG
AAGTTAAGGTAGATGACCGTAAGATCTCGCCTCCTTCACGAGAGAACATG
AAGCAATCTATGGAGGCGCTCATTCATCACTTTAAGCTCTACTCTGAAGG
ATTTTCTGTACCTGCTGGAGACACATACACGGCCGTGGAGGCACCAAAGG
GAGAGTTTGGAGTCTACCTAGTGTCGAATGGTACAAATCGCCCGTACAGG
TGTGGTATCCGGGCACCAGGGTTTGCACATTTGTCAGCGCTAAACATGAT
GGGGAAGGGCCACATGGTCGCTGATGCCGTGACAATCATTGGAACACAGG
ATATAGTATTGTAAGTTTTTTTCACCGCATCGGAAGCATATCAAGCGAGC
TGCAAGATATTCTTACTAACACTTGCTATGTTTCCTTTGTTTCCACCATC
CTGGTCATATTGGCAAACATTCAAACATACAGCGTAAGTTTGGTTGCATC
AAGTATCCCTTAACTCTAAGAATGAAAGCGTGTGTGTCTAACTTGCTCGA
TGTGCTTAATTTCGTTTTTGTCATGAATATTTTTGGGATTCTACATATAG
GGTGTAAGTGAATCTTGTGTCTCTAAACCTCATTTCTTTTCACAAGGAAA
TTGTCTCTGACTTTGACCGTATTCTGTTCTGATCTTCATTGACATATTTT
TAGGAGGTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:230549..232609-

>Gvermi7939.t1 ID=Gvermi7939.t1|Name=Gvermi7939.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=480bp|location=Sequence derived from alignment at ScGOVlb_24226:230549..232609- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTGCGAGCTTTTTCCTCTCGTCTTGCTTCCGTCTCTCATGCAAGCTG
CTCTAATGTGCGCGCGCTGGCTACGCGAGGCGGGCAGCTCGCGTCTGTAG
GCTCCCCGCAGAAGCTGGACCCTCATTACATCGACTCTGCGGTGAACGCG
GTCGCTGGTGATGTTCATCTTGATCAACTGGAGCCTCACGAACTTTCCCG
CATGCGAGCTGATCGAGAGAAACAACTCGATATCCGAAACTTCACTCTTA
ATTTTGGTCCGCAGCATCCGAAGCATAATTTCAATCATTCCCGTACGGCC
ACTTGCGATGCGTCAATGTCGTTATTACTGAAGGCTGCTCATGGAGTTCT
CCGCCTCGTGCTGGAACTTGATGGCGAAGTCGCCGTCAAACTAGACCCAC
ACATTACTCGCATTCTTAACCATCTTCTTGCTGTCGGATGTCATGGAATG
GATGTGGGATATAGTATTGTAAGAGGTTGA
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