Gvermi7938.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7938.t1
Unique NameGvermi7938.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length693
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:187728..189877 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707013.1
Preferred nameACX6
PFAMsACOX,Acyl-CoA_dh_1,Acyl-CoA_dh_M
Max annot lvl2759|Eukaryota
KEGG rclassRC00052,RC00076
KEGG koko:K00232
KEGG ReactionR01175,R01279,R03777,R03857,R03990,R04751,R04754,R07888,R07892,R07896,R07934,R07950
KEGG Pathwayko00071,ko00592,ko01040,ko01100,ko01110,ko01212,ko03320,ko04024,ko04146,map00071,map00592,map01040,map01100,map01110,map01212,map03320,map04024,map04146
KEGG ModuleM00087,M00113
GOsGO:0000166,GO:0003674,GO:0003824,GO:0003995,GO:0003997,GO:0005488,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009987,GO:0016042,GO:0016054,GO:0016491,GO:0016627,GO:0016634,GO:0019395,GO:0019752,GO:0030258,GO:0032787,GO:0033539,GO:0034440,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0046395,GO:0048037,GO:0050660,GO:0050662,GO:0051791,GO:0055114,GO:0071704,GO:0072329,GO:0097159,GO:1901265,GO:1901363,GO:1901575
Evalue4.58e-213
EggNOG OGsCOG1960@1|root,KOG0135@2759|Eukaryota
EC1.3.3.6
Descriptionacyl-CoA oxidase activity
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7938Gvermi7938Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 187728..189877 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7938.t1Gvermi7938.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 187728..189877 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7938.t1.stop1Gvermi7938.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 187728..187730 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7938.t1.CDS1Gvermi7938.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 187728..188739 -
Gvermi7938.t1.CDS2Gvermi7938.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 188811..189877 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7938.t1.exon1Gvermi7938.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 187728..188739 -
Gvermi7938.t1.exon2Gvermi7938.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 188811..189877 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7938.t1.intron1Gvermi7938.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 188740..188810 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7938.t1.start1Gvermi7938.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 189875..189877 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7938.t1 ID=Gvermi7938.t1|Name=Gvermi7938.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=693bp
MPASPTLSKHHSPSLLKSHGLSASPPPPRFSTDIFDNAAREFAPHETPPI
PRAHLQWMHDAQHQPAPHASKPQSKPLFDVHSMRALLDQHHLQLRDNLYK
LFKQPDFHAHHGLSLSQQRAHVMKMWKKVDALGYLHNSISAGTMEGRQRY
EAVIESCGLLSHSLDIKMSVHYGLFGATIKLLGNDEQAAKWLPLVERCQM
LGCFALTELGHGSNARGVETVATYDLSSRSFVIHTPSDSAQKYWIGGAYQ
TARWTVCFAQLYVKGVCHGVHPFLVRIRNDDGTNVNGVTLADCGHKCGLN
GVDNGRIWFDHVPVPWDHLLRRYAQVSVDGHYSSKFNSPDELFGASLASL
SGGRVSVAAGCLNQAKIGLSIAIRYALSRRAFGPRDGEEVRLLDYQSHQY
RLIPGLATTYVMLIVLNELKYLWHHQQLGKKLHIWSSGFKALMTWHSLAT
LQEAREACGGQGYKSENRIGPIKNGHDVALTYEGDNHILLQAVTKSVLPE
FMRGVKNNAVFAGHFSYLNERYALRDADLGSMDVCSVEFARIVFRRREAA
VFARLTNRLQLMQRNGMTALEAFNNCGILVEEAARAHTELLILELFDKKM
KQLGEDGKSELMNALRTCGSIYVLKRIDDDGGFIRNGALSGADGLRVHDR
LLEMCKAMRAHVMDYVNGFGIPAHLLAPIAFDYVAHNSRSRL*
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spliced messenger RNA

>Gvermi7938.t1 ID=Gvermi7938.t1|Name=Gvermi7938.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2079bp|location=Sequence derived from alignment at ScGOVlb_24226:187728..189877- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTGCCTCGCCAACTTTGTCCAAGCATCACAGCCCGTCGCTTCTGAA
ATCCCATGGTCTTTCTGCCTCGCCGCCTCCCCCGCGCTTTTCAACTGATA
TTTTTGACAACGCGGCGCGCGAGTTTGCCCCTCATGAAACCCCTCCCATT
CCCCGCGCCCATCTGCAATGGATGCATGATGCCCAGCATCAGCCTGCTCC
CCATGCGTCCAAACCGCAGTCCAAGCCTTTGTTCGACGTGCACAGCATGA
GGGCTCTGTTAGACCAGCATCATTTACAGCTTCGAGATAATCTGTACAAA
CTCTTCAAGCAGCCTGACTTCCACGCCCATCACGGCCTGTCGTTATCCCA
ACAACGCGCCCACGTGATGAAAATGTGGAAGAAAGTAGACGCCCTGGGGT
ACCTACACAATTCCATATCTGCCGGCACGATGGAAGGTAGACAACGGTAC
GAAGCTGTCATAGAGAGCTGCGGCCTACTTTCACACAGCCTCGACATAAA
AATGTCCGTCCACTATGGGCTGTTCGGTGCCACAATAAAGCTCCTGGGCA
ACGACGAACAGGCTGCCAAATGGTTGCCGCTGGTCGAACGCTGTCAAATG
CTGGGCTGCTTTGCTCTTACTGAGTTGGGGCACGGTTCCAATGCACGAGG
TGTCGAGACTGTTGCCACGTATGACTTATCTTCGCGTTCGTTTGTCATCC
ATACCCCTTCCGATTCTGCGCAGAAGTATTGGATTGGCGGTGCGTATCAA
ACAGCCAGATGGACCGTCTGTTTTGCACAGTTGTATGTCAAGGGCGTTTG
CCACGGCGTTCATCCGTTTTTAGTACGAATCCGAAATGATGATGGGACAA
ATGTCAACGGAGTGACTTTGGCAGACTGTGGACACAAGTGTGGGCTCAAC
GGCGTGGATAATGGCAGGATTTGGTTTGATCATGTACCAGTGCCATGGGA
CCATTTGCTGCGGCGTTATGCTCAGGTTTCTGTGGATGGCCACTATTCTT
CAAAATTCAACAGTCCCGACGAGCTTTTCGGCGCGTCTTTGGCTTCACTG
TCCGGAGGAAGGGTTAGTGTGGCGGCTGGGTGTCTGAACCAGGCAAAAAT
TGGACTTTCGATTGCCATCCGTTATGCGCTGTCTCGGAGGGCATTTGGTC
CTCGTGACGGTGAAGAAGTACGACTTCTGGACTATCAGAGTCACCAATAT
CGACTCATTCCCGGGCTGGCCACAACATATGTGATGTTAATTGTTCTGAA
TGAACTCAAATACCTATGGCATCACCAGCAGCTTGGGAAAAAGCTTCATA
TTTGGAGTTCAGGCTTCAAGGCATTGATGACATGGCACTCTTTGGCCACG
CTCCAAGAAGCAAGGGAAGCATGTGGCGGGCAAGGGTACAAGTCGGAAAA
TCGCATCGGTCCGATCAAGAATGGTCATGATGTGGCGCTCACTTATGAGG
GAGACAACCATATATTGTTGCAAGCTGTCACCAAGTCTGTTCTTCCTGAA
TTCATGCGCGGCGTCAAAAACAATGCTGTTTTCGCGGGACATTTCTCGTA
TCTGAACGAGCGCTACGCGTTAAGAGATGCTGATCTTGGTAGCATGGATG
TGTGCAGCGTAGAATTTGCGCGTATTGTGTTTCGTCGCAGGGAAGCTGCA
GTGTTCGCAAGACTGACAAATCGCCTGCAGCTGATGCAGAGAAACGGTAT
GACTGCTCTCGAGGCATTCAATAACTGTGGAATCTTGGTGGAAGAAGCTG
CTCGCGCTCATACAGAGTTGCTGATACTTGAACTATTTGATAAGAAAATG
AAGCAACTAGGAGAAGATGGTAAAAGTGAGTTGATGAATGCTTTACGGAC
ATGTGGATCGATTTATGTGTTGAAGCGTATCGATGATGATGGTGGATTCA
TAAGAAATGGGGCGCTGAGCGGAGCAGACGGGTTGAGAGTTCACGATCGC
CTTTTGGAAATGTGCAAGGCTATGCGGGCTCATGTGATGGACTACGTCAA
CGGCTTCGGAATTCCGGCGCATTTACTTGCCCCGATCGCGTTTGACTATG
TTGCCCACAACAGTCGTTCTAGATTATGA
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protein sequence of Gvermi7938.t1

>Gvermi7938.t1 ID=Gvermi7938.t1|Name=Gvermi7938.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=693bp
MPASPTLSKHHSPSLLKSHGLSASPPPPRFSTDIFDNAAREFAPHETPPI
PRAHLQWMHDAQHQPAPHASKPQSKPLFDVHSMRALLDQHHLQLRDNLYK
LFKQPDFHAHHGLSLSQQRAHVMKMWKKVDALGYLHNSISAGTMEGRQRY
EAVIESCGLLSHSLDIKMSVHYGLFGATIKLLGNDEQAAKWLPLVERCQM
LGCFALTELGHGSNARGVETVATYDLSSRSFVIHTPSDSAQKYWIGGAYQ
TARWTVCFAQLYVKGVCHGVHPFLVRIRNDDGTNVNGVTLADCGHKCGLN
GVDNGRIWFDHVPVPWDHLLRRYAQVSVDGHYSSKFNSPDELFGASLASL
SGGRVSVAAGCLNQAKIGLSIAIRYALSRRAFGPRDGEEVRLLDYQSHQY
RLIPGLATTYVMLIVLNELKYLWHHQQLGKKLHIWSSGFKALMTWHSLAT
LQEAREACGGQGYKSENRIGPIKNGHDVALTYEGDNHILLQAVTKSVLPE
FMRGVKNNAVFAGHFSYLNERYALRDADLGSMDVCSVEFARIVFRRREAA
VFARLTNRLQLMQRNGMTALEAFNNCGILVEEAARAHTELLILELFDKKM
KQLGEDGKSELMNALRTCGSIYVLKRIDDDGGFIRNGALSGADGLRVHDR
LLEMCKAMRAHVMDYVNGFGIPAHLLAPIAFDYVAHNSRSRL*
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mRNA from alignment at ScGOVlb_24226:187728..189877-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7938.t1 ID=Gvermi7938.t1|Name=Gvermi7938.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2150bp|location=Sequence derived from alignment at ScGOVlb_24226:187728..189877- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTGCCTCGCCAACTTTGTCCAAGCATCACAGCCCGTCGCTTCTGAA
ATCCCATGGTCTTTCTGCCTCGCCGCCTCCCCCGCGCTTTTCAACTGATA
TTTTTGACAACGCGGCGCGCGAGTTTGCCCCTCATGAAACCCCTCCCATT
CCCCGCGCCCATCTGCAATGGATGCATGATGCCCAGCATCAGCCTGCTCC
CCATGCGTCCAAACCGCAGTCCAAGCCTTTGTTCGACGTGCACAGCATGA
GGGCTCTGTTAGACCAGCATCATTTACAGCTTCGAGATAATCTGTACAAA
CTCTTCAAGCAGCCTGACTTCCACGCCCATCACGGCCTGTCGTTATCCCA
ACAACGCGCCCACGTGATGAAAATGTGGAAGAAAGTAGACGCCCTGGGGT
ACCTACACAATTCCATATCTGCCGGCACGATGGAAGGTAGACAACGGTAC
GAAGCTGTCATAGAGAGCTGCGGCCTACTTTCACACAGCCTCGACATAAA
AATGTCCGTCCACTATGGGCTGTTCGGTGCCACAATAAAGCTCCTGGGCA
ACGACGAACAGGCTGCCAAATGGTTGCCGCTGGTCGAACGCTGTCAAATG
CTGGGCTGCTTTGCTCTTACTGAGTTGGGGCACGGTTCCAATGCACGAGG
TGTCGAGACTGTTGCCACGTATGACTTATCTTCGCGTTCGTTTGTCATCC
ATACCCCTTCCGATTCTGCGCAGAAGTATTGGATTGGCGGTGCGTATCAA
ACAGCCAGATGGACCGTCTGTTTTGCACAGTTGTATGTCAAGGGCGTTTG
CCACGGCGTTCATCCGTTTTTAGTACGAATCCGAAATGATGATGGGACAA
ATGTCAACGGAGTGACTTTGGCAGACTGTGGACACAAGTGTGGGCTCAAC
GGCGTGGATAATGGCAGGATTTGGTTTGATCATGTACCAGTGCCATGGGA
CCATTTGCTGCGGCGTTATGCTCAGGTTTCTGTGGATGGCCACTATTCTT
CAAAATTCAACAGTCCCGACGAGCTTTTCGGCGCGTCTTTGGCTTCACTG
TCCGGAGGAAGGGTTAGGTAAGTTTGTGCCTTCATCATATAGCTCGTTGC
GCATTAGCTCATTTCTGACTTCGGATTTACTTTTCAAGTGTGGCGGCTGG
GTGTCTGAACCAGGCAAAAATTGGACTTTCGATTGCCATCCGTTATGCGC
TGTCTCGGAGGGCATTTGGTCCTCGTGACGGTGAAGAAGTACGACTTCTG
GACTATCAGAGTCACCAATATCGACTCATTCCCGGGCTGGCCACAACATA
TGTGATGTTAATTGTTCTGAATGAACTCAAATACCTATGGCATCACCAGC
AGCTTGGGAAAAAGCTTCATATTTGGAGTTCAGGCTTCAAGGCATTGATG
ACATGGCACTCTTTGGCCACGCTCCAAGAAGCAAGGGAAGCATGTGGCGG
GCAAGGGTACAAGTCGGAAAATCGCATCGGTCCGATCAAGAATGGTCATG
ATGTGGCGCTCACTTATGAGGGAGACAACCATATATTGTTGCAAGCTGTC
ACCAAGTCTGTTCTTCCTGAATTCATGCGCGGCGTCAAAAACAATGCTGT
TTTCGCGGGACATTTCTCGTATCTGAACGAGCGCTACGCGTTAAGAGATG
CTGATCTTGGTAGCATGGATGTGTGCAGCGTAGAATTTGCGCGTATTGTG
TTTCGTCGCAGGGAAGCTGCAGTGTTCGCAAGACTGACAAATCGCCTGCA
GCTGATGCAGAGAAACGGTATGACTGCTCTCGAGGCATTCAATAACTGTG
GAATCTTGGTGGAAGAAGCTGCTCGCGCTCATACAGAGTTGCTGATACTT
GAACTATTTGATAAGAAAATGAAGCAACTAGGAGAAGATGGTAAAAGTGA
GTTGATGAATGCTTTACGGACATGTGGATCGATTTATGTGTTGAAGCGTA
TCGATGATGATGGTGGATTCATAAGAAATGGGGCGCTGAGCGGAGCAGAC
GGGTTGAGAGTTCACGATCGCCTTTTGGAAATGTGCAAGGCTATGCGGGC
TCATGTGATGGACTACGTCAACGGCTTCGGAATTCCGGCGCATTTACTTG
CCCCGATCGCGTTTGACTATGTTGCCCACAACAGTCGTTCTAGATTATGA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:187728..189877-

>Gvermi7938.t1 ID=Gvermi7938.t1|Name=Gvermi7938.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2079bp|location=Sequence derived from alignment at ScGOVlb_24226:187728..189877- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTGCCTCGCCAACTTTGTCCAAGCATCACAGCCCGTCGCTTCTGAA
ATCCCATGGTCTTTCTGCCTCGCCGCCTCCCCCGCGCTTTTCAACTGATA
TTTTTGACAACGCGGCGCGCGAGTTTGCCCCTCATGAAACCCCTCCCATT
CCCCGCGCCCATCTGCAATGGATGCATGATGCCCAGCATCAGCCTGCTCC
CCATGCGTCCAAACCGCAGTCCAAGCCTTTGTTCGACGTGCACAGCATGA
GGGCTCTGTTAGACCAGCATCATTTACAGCTTCGAGATAATCTGTACAAA
CTCTTCAAGCAGCCTGACTTCCACGCCCATCACGGCCTGTCGTTATCCCA
ACAACGCGCCCACGTGATGAAAATGTGGAAGAAAGTAGACGCCCTGGGGT
ACCTACACAATTCCATATCTGCCGGCACGATGGAAGGTAGACAACGGTAC
GAAGCTGTCATAGAGAGCTGCGGCCTACTTTCACACAGCCTCGACATAAA
AATGTCCGTCCACTATGGGCTGTTCGGTGCCACAATAAAGCTCCTGGGCA
ACGACGAACAGGCTGCCAAATGGTTGCCGCTGGTCGAACGCTGTCAAATG
CTGGGCTGCTTTGCTCTTACTGAGTTGGGGCACGGTTCCAATGCACGAGG
TGTCGAGACTGTTGCCACGTATGACTTATCTTCGCGTTCGTTTGTCATCC
ATACCCCTTCCGATTCTGCGCAGAAGTATTGGATTGGCGGTGCGTATCAA
ACAGCCAGATGGACCGTCTGTTTTGCACAGTTGTATGTCAAGGGCGTTTG
CCACGGCGTTCATCCGTTTTTAGTACGAATCCGAAATGATGATGGGACAA
ATGTCAACGGAGTGACTTTGGCAGACTGTGGACACAAGTGTGGGCTCAAC
GGCGTGGATAATGGCAGGATTTGGTTTGATCATGTACCAGTGCCATGGGA
CCATTTGCTGCGGCGTTATGCTCAGGTTTCTGTGGATGGCCACTATTCTT
CAAAATTCAACAGTCCCGACGAGCTTTTCGGCGCGTCTTTGGCTTCACTG
TCCGGAGGAAGGGTTAGTGTGGCGGCTGGGTGTCTGAACCAGGCAAAAAT
TGGACTTTCGATTGCCATCCGTTATGCGCTGTCTCGGAGGGCATTTGGTC
CTCGTGACGGTGAAGAAGTACGACTTCTGGACTATCAGAGTCACCAATAT
CGACTCATTCCCGGGCTGGCCACAACATATGTGATGTTAATTGTTCTGAA
TGAACTCAAATACCTATGGCATCACCAGCAGCTTGGGAAAAAGCTTCATA
TTTGGAGTTCAGGCTTCAAGGCATTGATGACATGGCACTCTTTGGCCACG
CTCCAAGAAGCAAGGGAAGCATGTGGCGGGCAAGGGTACAAGTCGGAAAA
TCGCATCGGTCCGATCAAGAATGGTCATGATGTGGCGCTCACTTATGAGG
GAGACAACCATATATTGTTGCAAGCTGTCACCAAGTCTGTTCTTCCTGAA
TTCATGCGCGGCGTCAAAAACAATGCTGTTTTCGCGGGACATTTCTCGTA
TCTGAACGAGCGCTACGCGTTAAGAGATGCTGATCTTGGTAGCATGGATG
TGTGCAGCGTAGAATTTGCGCGTATTGTGTTTCGTCGCAGGGAAGCTGCA
GTGTTCGCAAGACTGACAAATCGCCTGCAGCTGATGCAGAGAAACGGTAT
GACTGCTCTCGAGGCATTCAATAACTGTGGAATCTTGGTGGAAGAAGCTG
CTCGCGCTCATACAGAGTTGCTGATACTTGAACTATTTGATAAGAAAATG
AAGCAACTAGGAGAAGATGGTAAAAGTGAGTTGATGAATGCTTTACGGAC
ATGTGGATCGATTTATGTGTTGAAGCGTATCGATGATGATGGTGGATTCA
TAAGAAATGGGGCGCTGAGCGGAGCAGACGGGTTGAGAGTTCACGATCGC
CTTTTGGAAATGTGCAAGGCTATGCGGGCTCATGTGATGGACTACGTCAA
CGGCTTCGGAATTCCGGCGCATTTACTTGCCCCGATCGCGTTTGACTATG
TTGCCCACAACAGTCGTTCTAGATTATGA
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