Gvermi7936.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7936.t1
Unique NameGvermi7936.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length214
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:178967..179608 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CME041CT
Preferred nameTHF1
PFAMsThylakoidFormat
Max annot lvl2759|Eukaryota
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0006605,GO:0006612,GO:0006725,GO:0006778,GO:0006787,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009507,GO:0009526,GO:0009527,GO:0009528,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009657,GO:0009668,GO:0009707,GO:0009743,GO:0009756,GO:0009889,GO:0009941,GO:0009987,GO:0010027,GO:0010033,GO:0010119,GO:0010182,GO:0010207,GO:0010319,GO:0015031,GO:0015833,GO:0015979,GO:0015994,GO:0015996,GO:0016020,GO:0016043,GO:0017038,GO:0019222,GO:0019439,GO:0019684,GO:0019866,GO:0019867,GO:0022607,GO:0023052,GO:0031090,GO:0031323,GO:0031967,GO:0031968,GO:0031969,GO:0031975,GO:0031976,GO:0031984,GO:0033013,GO:0033015,GO:0033036,GO:0033365,GO:0034357,GO:0034613,GO:0034622,GO:0034641,GO:0042170,GO:0042221,GO:0042440,GO:0042651,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044248,GO:0044270,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0044743,GO:0045036,GO:0045037,GO:0045038,GO:0045184,GO:0046149,GO:0046483,GO:0046700,GO:0046907,GO:0048518,GO:0048522,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051186,GO:0051187,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0055035,GO:0055085,GO:0061024,GO:0065002,GO:0065003,GO:0065007,GO:0070727,GO:0070887,GO:0071310,GO:0071322,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072596,GO:0072598,GO:0072657,GO:0080134,GO:0090150,GO:0098588,GO:0098805,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:1901701,GO:1902456,GO:1902458,GO:1903426,GO:2000070,GO:2000377
Evalue1.34e-29
EggNOG OGs2CHNN@1|root,2QUQV@2759|Eukaryota
Descriptionpositive regulation of stomatal opening
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7936Gvermi7936Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 178967..179989 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7936.t1.stop1Gvermi7936.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 178967..178969 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7936.t1.CDS1Gvermi7936.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 178967..179608 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7936.t1.exon1Gvermi7936.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 178967..179608 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7936.t1.start1Gvermi7936.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 179606..179608 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7936.t1Gvermi7936.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 178967..179608 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7936.t1 ID=Gvermi7936.t1|Name=Gvermi7936.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=214bp
MWRFDAVFAFGFDSIFSTFLRYYPSEQERDLLYAACASSLNLDIDLIKTS
AASVRDWLEGKTEDDIFAALNTASPSASADAVGPVIEALAYIRHSADFDW
YYSRLFGIGLIQVMDAVGAQLSAANAEKWADKIGLVQSKFTSEMGAYLSN
MERLKQAEQIFAEATAREAKKTAERLAAKAQAAAKQAAQLEQEQQTDDGA
QSAQVPSATEPST*
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spliced messenger RNA

>Gvermi7936.t1 ID=Gvermi7936.t1|Name=Gvermi7936.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=642bp|location=Sequence derived from alignment at ScGOVlb_24226:178967..179608- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGCGTTTCGATGCCGTCTTCGCCTTCGGCTTCGACTCCATATTCTC
CACCTTTCTGCGCTACTACCCCAGTGAGCAAGAACGTGACCTTCTGTACG
CCGCTTGCGCCTCGTCGCTCAACCTCGACATTGATCTCATCAAGACCAGT
GCCGCCTCCGTCAGGGACTGGCTCGAAGGAAAGACCGAAGACGACATCTT
CGCAGCCCTCAACACCGCCTCCCCATCCGCGTCGGCCGACGCCGTAGGCC
CAGTCATAGAGGCGCTGGCCTACATACGCCACTCTGCCGACTTTGACTGG
TACTACAGCAGGTTATTTGGTATCGGTCTCATCCAAGTCATGGATGCCGT
CGGCGCCCAACTGTCCGCCGCCAACGCTGAAAAGTGGGCCGACAAAATCG
GGCTCGTGCAAAGCAAGTTCACCTCCGAGATGGGCGCCTACCTCTCTAAC
ATGGAGCGTCTCAAGCAGGCTGAACAGATTTTCGCCGAGGCAACCGCACG
GGAAGCAAAGAAAACCGCGGAGCGTTTGGCCGCCAAAGCTCAGGCTGCCG
CCAAACAGGCTGCCCAACTGGAGCAGGAGCAGCAAACCGACGACGGCGCC
CAATCAGCGCAGGTGCCCAGTGCAACCGAACCTTCTACGTAA
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protein sequence of Gvermi7936.t1

>Gvermi7936.t1 ID=Gvermi7936.t1|Name=Gvermi7936.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=214bp
MWRFDAVFAFGFDSIFSTFLRYYPSEQERDLLYAACASSLNLDIDLIKTS
AASVRDWLEGKTEDDIFAALNTASPSASADAVGPVIEALAYIRHSADFDW
YYSRLFGIGLIQVMDAVGAQLSAANAEKWADKIGLVQSKFTSEMGAYLSN
MERLKQAEQIFAEATAREAKKTAERLAAKAQAAAKQAAQLEQEQQTDDGA
QSAQVPSATEPST*
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mRNA from alignment at ScGOVlb_24226:178967..179608-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7936.t1 ID=Gvermi7936.t1|Name=Gvermi7936.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=642bp|location=Sequence derived from alignment at ScGOVlb_24226:178967..179608- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGGCGTTTCGATGCCGTCTTCGCCTTCGGCTTCGACTCCATATTCTC
CACCTTTCTGCGCTACTACCCCAGTGAGCAAGAACGTGACCTTCTGTACG
CCGCTTGCGCCTCGTCGCTCAACCTCGACATTGATCTCATCAAGACCAGT
GCCGCCTCCGTCAGGGACTGGCTCGAAGGAAAGACCGAAGACGACATCTT
CGCAGCCCTCAACACCGCCTCCCCATCCGCGTCGGCCGACGCCGTAGGCC
CAGTCATAGAGGCGCTGGCCTACATACGCCACTCTGCCGACTTTGACTGG
TACTACAGCAGGTTATTTGGTATCGGTCTCATCCAAGTCATGGATGCCGT
CGGCGCCCAACTGTCCGCCGCCAACGCTGAAAAGTGGGCCGACAAAATCG
GGCTCGTGCAAAGCAAGTTCACCTCCGAGATGGGCGCCTACCTCTCTAAC
ATGGAGCGTCTCAAGCAGGCTGAACAGATTTTCGCCGAGGCAACCGCACG
GGAAGCAAAGAAAACCGCGGAGCGTTTGGCCGCCAAAGCTCAGGCTGCCG
CCAAACAGGCTGCCCAACTGGAGCAGGAGCAGCAAACCGACGACGGCGCC
CAATCAGCGCAGGTGCCCAGTGCAACCGAACCTTCTACGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:178967..179608-

>Gvermi7936.t1 ID=Gvermi7936.t1|Name=Gvermi7936.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=642bp|location=Sequence derived from alignment at ScGOVlb_24226:178967..179608- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGGCGTTTCGATGCCGTCTTCGCCTTCGGCTTCGACTCCATATTCTC
CACCTTTCTGCGCTACTACCCCAGTGAGCAAGAACGTGACCTTCTGTACG
CCGCTTGCGCCTCGTCGCTCAACCTCGACATTGATCTCATCAAGACCAGT
GCCGCCTCCGTCAGGGACTGGCTCGAAGGAAAGACCGAAGACGACATCTT
CGCAGCCCTCAACACCGCCTCCCCATCCGCGTCGGCCGACGCCGTAGGCC
CAGTCATAGAGGCGCTGGCCTACATACGCCACTCTGCCGACTTTGACTGG
TACTACAGCAGGTTATTTGGTATCGGTCTCATCCAAGTCATGGATGCCGT
CGGCGCCCAACTGTCCGCCGCCAACGCTGAAAAGTGGGCCGACAAAATCG
GGCTCGTGCAAAGCAAGTTCACCTCCGAGATGGGCGCCTACCTCTCTAAC
ATGGAGCGTCTCAAGCAGGCTGAACAGATTTTCGCCGAGGCAACCGCACG
GGAAGCAAAGAAAACCGCGGAGCGTTTGGCCGCCAAAGCTCAGGCTGCCG
CCAAACAGGCTGCCCAACTGGAGCAGGAGCAGCAAACCGACGACGGCGCC
CAATCAGCGCAGGTGCCCAGTGCAACCGAACCTTCTACGTAA
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