Gvermi7931.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi7931.t1
Unique Name	Gvermi7931.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	443

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24226	contig	ScGOVlb_24226:123009..124337 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708889.1
Preferred name	MDAR1
PFAMs	Pyr_redox_2
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K08232
KEGG Reaction	R00095
KEGG Pathway	ko00053,ko01100,map00053,map01100
GOs	GO:0001101,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005829,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0009056,GO:0009414,GO:0009415,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009607,GO:0009608,GO:0009610,GO:0009620,GO:0009628,GO:0009636,GO:0009651,GO:0009719,GO:0009725,GO:0009753,GO:0009941,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010043,GO:0016020,GO:0016491,GO:0016651,GO:0016655,GO:0016656,GO:0016999,GO:0017001,GO:0017144,GO:0031090,GO:0031903,GO:0031967,GO:0031975,GO:0042221,GO:0042579,GO:0042737,GO:0042743,GO:0042744,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043900,GO:0043903,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0046686,GO:0050789,GO:0050896,GO:0051186,GO:0051187,GO:0051704,GO:0051707,GO:0051716,GO:0055114,GO:0065007,GO:0070887,GO:0072593,GO:0097237,GO:0098588,GO:0098754,GO:0098805,GO:0098869,GO:1901700,GO:1990748
Evalue	4.27e-129
EggNOG OGs	COG0446@1\|root,KOG1336@2759\|Eukaryota
EC	1.6.5.4
Description	monodehydroascorbate reductase (NADH) activity
COG category	J
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi7931	Gvermi7931	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24226 123009..124337 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7931.t1.start1	Gvermi7931.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24226 123009..123011 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7931.t1.CDS1	Gvermi7931.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24226 123009..124337 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7931.t1.exon1	Gvermi7931.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24226 123009..124337 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7931.t1.stop1	Gvermi7931.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24226 124335..124337 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7931.t1	Gvermi7931.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24226 123009..124337 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24226:123009..124337+
coding sequence from alignment at ScGOVlb_24226:123009..124337+

mRNA sequence

>Gvermi7931.t1 ID=Gvermi7931.t1|Name=Gvermi7931.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=443bp
MPRPIVRSMASAASTFKYIIVGAGNAAGYAARQFVESGLKPGELCLVGSE
PYFPYERPALSKGVLMNPKARLPGFHTCVGSGGERQPPEWYEEHGIAAKL
GKPVIKFDADTKSVVIEGDETVSATDAVILATGAQPIRLTKTEGHHLKGI
HYLRENDEGVALADALKANKDKWVMVIGGGYIGMEVAAAAVTVGCKVKLV
FPEDHLMSRLFTPEIAAHYEKVYQEKGVVFLNKGRLCKAFLGDENDHVRG
AKICQEGKPDFEEEASLIVVGVGARPETSLFKGQLRMDERGGVVTDASLR
SSVEGIYAVGDIANYPLKMYDNRPQRTEHVQNARETAAHAVKSILTGGSE
PYDYLPYFYSRVFDLSWQFFGDNVGECVVVGDFDPQLLAVWVKDGKLFGV
FMEHPSDDDTANMKKVARSQPVVDAEALGKCASVEEAWKVLL*

spliced messenger RNA

>Gvermi7931.t1 ID=Gvermi7931.t1|Name=Gvermi7931.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1329bp|location=Sequence derived from alignment at ScGOVlb_24226:123009..124337+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCGACCCATCGTTCGATCCATGGCCTCCGCCGCTTCTACTTTTAA
ATACATCATCGTCGGCGCCGGCAACGCCGCCGGCTATGCTGCCCGACAGT
TTGTCGAGTCCGGCCTCAAACCAGGCGAACTGTGCCTCGTCGGCTCGGAA
CCTTACTTCCCGTATGAGCGCCCCGCCCTGTCCAAGGGCGTGCTTATGAA
CCCCAAAGCCCGCCTGCCCGGCTTTCATACCTGTGTTGGATCGGGCGGCG
AACGTCAGCCCCCGGAGTGGTATGAAGAGCATGGCATTGCCGCCAAGCTT
GGCAAGCCCGTCATCAAGTTTGATGCCGACACGAAGAGTGTGGTCATCGA
AGGCGATGAAACTGTTTCCGCTACCGATGCAGTCATCTTGGCAACTGGCG
CGCAGCCCATTCGACTGACTAAAACCGAGGGCCACCATCTCAAGGGCATC
CATTACCTCCGCGAGAATGATGAGGGTGTCGCTCTCGCTGACGCATTGAA
GGCCAATAAGGACAAGTGGGTCATGGTTATCGGTGGCGGTTACATCGGCA
TGGAGGTGGCCGCTGCTGCCGTCACCGTGGGATGCAAGGTCAAACTTGTC
TTCCCCGAAGATCATCTCATGTCCAGATTGTTCACCCCGGAGATCGCTGC
CCACTACGAAAAGGTGTATCAAGAGAAAGGTGTTGTCTTCCTGAACAAAG
GCCGTCTGTGCAAGGCATTCCTGGGTGATGAGAACGACCATGTACGCGGC
GCTAAAATCTGCCAGGAGGGCAAGCCGGATTTCGAAGAGGAGGCTAGCCT
CATTGTCGTTGGTGTCGGCGCGCGACCTGAAACAAGTCTCTTCAAGGGCC
AATTGCGCATGGACGAGCGCGGTGGCGTCGTCACCGACGCTTCACTCCGA
TCTTCCGTCGAAGGAATATATGCTGTGGGCGATATTGCAAATTACCCTCT
CAAGATGTACGACAACCGTCCGCAACGTACGGAACATGTGCAAAACGCAC
GCGAAACGGCTGCGCATGCGGTGAAGTCTATTCTGACAGGGGGCTCTGAG
CCCTACGACTACTTGCCGTACTTCTACTCCAGAGTGTTCGATTTGTCGTG
GCAGTTCTTTGGAGACAATGTGGGAGAATGTGTCGTGGTTGGTGACTTTG
ACCCGCAGTTGTTGGCTGTTTGGGTTAAGGACGGCAAACTGTTCGGCGTG
TTCATGGAGCACCCCTCTGATGATGACACGGCCAACATGAAGAAAGTGGC
AAGATCGCAACCCGTTGTGGATGCAGAGGCTCTCGGCAAGTGCGCAAGCG
TTGAGGAAGCGTGGAAGGTGTTGCTGTGA

protein sequence of Gvermi7931.t1

>Gvermi7931.t1 ID=Gvermi7931.t1|Name=Gvermi7931.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=443bp
MPRPIVRSMASAASTFKYIIVGAGNAAGYAARQFVESGLKPGELCLVGSE
PYFPYERPALSKGVLMNPKARLPGFHTCVGSGGERQPPEWYEEHGIAAKL
GKPVIKFDADTKSVVIEGDETVSATDAVILATGAQPIRLTKTEGHHLKGI
HYLRENDEGVALADALKANKDKWVMVIGGGYIGMEVAAAAVTVGCKVKLV
FPEDHLMSRLFTPEIAAHYEKVYQEKGVVFLNKGRLCKAFLGDENDHVRG
AKICQEGKPDFEEEASLIVVGVGARPETSLFKGQLRMDERGGVVTDASLR
SSVEGIYAVGDIANYPLKMYDNRPQRTEHVQNARETAAHAVKSILTGGSE
PYDYLPYFYSRVFDLSWQFFGDNVGECVVVGDFDPQLLAVWVKDGKLFGV
FMEHPSDDDTANMKKVARSQPVVDAEALGKCASVEEAWKVLL*

mRNA from alignment at ScGOVlb_24226:123009..124337+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi7931.t1 ID=Gvermi7931.t1|Name=Gvermi7931.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1329bp|location=Sequence derived from alignment at ScGOVlb_24226:123009..124337+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGCGACCCATCGTTCGATCCATGGCCTCCGCCGCTTCTACTTTTAA
ATACATCATCGTCGGCGCCGGCAACGCCGCCGGCTATGCTGCCCGACAGT
TTGTCGAGTCCGGCCTCAAACCAGGCGAACTGTGCCTCGTCGGCTCGGAA
CCTTACTTCCCGTATGAGCGCCCCGCCCTGTCCAAGGGCGTGCTTATGAA
CCCCAAAGCCCGCCTGCCCGGCTTTCATACCTGTGTTGGATCGGGCGGCG
AACGTCAGCCCCCGGAGTGGTATGAAGAGCATGGCATTGCCGCCAAGCTT
GGCAAGCCCGTCATCAAGTTTGATGCCGACACGAAGAGTGTGGTCATCGA
AGGCGATGAAACTGTTTCCGCTACCGATGCAGTCATCTTGGCAACTGGCG
CGCAGCCCATTCGACTGACTAAAACCGAGGGCCACCATCTCAAGGGCATC
CATTACCTCCGCGAGAATGATGAGGGTGTCGCTCTCGCTGACGCATTGAA
GGCCAATAAGGACAAGTGGGTCATGGTTATCGGTGGCGGTTACATCGGCA
TGGAGGTGGCCGCTGCTGCCGTCACCGTGGGATGCAAGGTCAAACTTGTC
TTCCCCGAAGATCATCTCATGTCCAGATTGTTCACCCCGGAGATCGCTGC
CCACTACGAAAAGGTGTATCAAGAGAAAGGTGTTGTCTTCCTGAACAAAG
GCCGTCTGTGCAAGGCATTCCTGGGTGATGAGAACGACCATGTACGCGGC
GCTAAAATCTGCCAGGAGGGCAAGCCGGATTTCGAAGAGGAGGCTAGCCT
CATTGTCGTTGGTGTCGGCGCGCGACCTGAAACAAGTCTCTTCAAGGGCC
AATTGCGCATGGACGAGCGCGGTGGCGTCGTCACCGACGCTTCACTCCGA
TCTTCCGTCGAAGGAATATATGCTGTGGGCGATATTGCAAATTACCCTCT
CAAGATGTACGACAACCGTCCGCAACGTACGGAACATGTGCAAAACGCAC
GCGAAACGGCTGCGCATGCGGTGAAGTCTATTCTGACAGGGGGCTCTGAG
CCCTACGACTACTTGCCGTACTTCTACTCCAGAGTGTTCGATTTGTCGTG
GCAGTTCTTTGGAGACAATGTGGGAGAATGTGTCGTGGTTGGTGACTTTG
ACCCGCAGTTGTTGGCTGTTTGGGTTAAGGACGGCAAACTGTTCGGCGTG
TTCATGGAGCACCCCTCTGATGATGACACGGCCAACATGAAGAAAGTGGC
AAGATCGCAACCCGTTGTGGATGCAGAGGCTCTCGGCAAGTGCGCAAGCG
TTGAGGAAGCGTGGAAGGTGTTGCTGTGA

Coding sequence (CDS) from alignment at ScGOVlb_24226:123009..124337+

>Gvermi7931.t1 ID=Gvermi7931.t1|Name=Gvermi7931.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1329bp|location=Sequence derived from alignment at ScGOVlb_24226:123009..124337+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGCGACCCATCGTTCGATCCATGGCCTCCGCCGCTTCTACTTTTAA
ATACATCATCGTCGGCGCCGGCAACGCCGCCGGCTATGCTGCCCGACAGT
TTGTCGAGTCCGGCCTCAAACCAGGCGAACTGTGCCTCGTCGGCTCGGAA
CCTTACTTCCCGTATGAGCGCCCCGCCCTGTCCAAGGGCGTGCTTATGAA
CCCCAAAGCCCGCCTGCCCGGCTTTCATACCTGTGTTGGATCGGGCGGCG
AACGTCAGCCCCCGGAGTGGTATGAAGAGCATGGCATTGCCGCCAAGCTT
GGCAAGCCCGTCATCAAGTTTGATGCCGACACGAAGAGTGTGGTCATCGA
AGGCGATGAAACTGTTTCCGCTACCGATGCAGTCATCTTGGCAACTGGCG
CGCAGCCCATTCGACTGACTAAAACCGAGGGCCACCATCTCAAGGGCATC
CATTACCTCCGCGAGAATGATGAGGGTGTCGCTCTCGCTGACGCATTGAA
GGCCAATAAGGACAAGTGGGTCATGGTTATCGGTGGCGGTTACATCGGCA
TGGAGGTGGCCGCTGCTGCCGTCACCGTGGGATGCAAGGTCAAACTTGTC
TTCCCCGAAGATCATCTCATGTCCAGATTGTTCACCCCGGAGATCGCTGC
CCACTACGAAAAGGTGTATCAAGAGAAAGGTGTTGTCTTCCTGAACAAAG
GCCGTCTGTGCAAGGCATTCCTGGGTGATGAGAACGACCATGTACGCGGC
GCTAAAATCTGCCAGGAGGGCAAGCCGGATTTCGAAGAGGAGGCTAGCCT
CATTGTCGTTGGTGTCGGCGCGCGACCTGAAACAAGTCTCTTCAAGGGCC
AATTGCGCATGGACGAGCGCGGTGGCGTCGTCACCGACGCTTCACTCCGA
TCTTCCGTCGAAGGAATATATGCTGTGGGCGATATTGCAAATTACCCTCT
CAAGATGTACGACAACCGTCCGCAACGTACGGAACATGTGCAAAACGCAC
GCGAAACGGCTGCGCATGCGGTGAAGTCTATTCTGACAGGGGGCTCTGAG
CCCTACGACTACTTGCCGTACTTCTACTCCAGAGTGTTCGATTTGTCGTG
GCAGTTCTTTGGAGACAATGTGGGAGAATGTGTCGTGGTTGGTGACTTTG
ACCCGCAGTTGTTGGCTGTTTGGGTTAAGGACGGCAAACTGTTCGGCGTG
TTCATGGAGCACCCCTCTGATGATGACACGGCCAACATGAAGAAAGTGGC
AAGATCGCAACCCGTTGTGGATGCAGAGGCTCTCGGCAAGTGCGCAAGCG
TTGAGGAAGCGTGGAAGGTGTTGCTGTGA