Gvermi7925.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7925.t1
Unique NameGvermi7925.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length462
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:63698..65083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7925Gvermi7925Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 63698..65083 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7925.t1.start1Gvermi7925.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 63698..63700 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7925.t1.CDS1Gvermi7925.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 63698..65083 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7925.t1.exon1Gvermi7925.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 63698..65083 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7925.t1.stop1Gvermi7925.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 65081..65083 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7925.t1Gvermi7925.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 63698..65083 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7925.t1 ID=Gvermi7925.t1|Name=Gvermi7925.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=462bp
MSFLIVFGGLLLLLSNACAQTGAIRPDRIQLLNDLYGRAIGLTNFPGTPL
ISSRRETFNERIQRLRGEIPDAPPDVEPNVDETYNPMRDAKCFNAPYDTS
VAASKRSSLYADYVRIFEWGFNMPRSSPIFSLSENGGVSNNRFPGMCLRM
AFHDNSLNPRFGEIAPFISSFISSSGEWTGPKRFLPSSGGDASVLTCRIE
RLHPNQNYDQTASRILFAFQTTIVPGLNGQSLMSKYDMSYADALHNCALA
AVSWLSPVQGAAAKNEIRFGRKDACYFSDLEILAEDPLSEGGNNPLCGPT
ELLPPVTFSASDSNQWFTSRGLPERQWLSLMGTHTTFDNFGRTDLLRRLS
ISGDDYFTDYVGVPVHEPRPQDVDGDPENPGCNWVVNGQELFWPMSQADC
ALGIDVIEDQSSLGTLQTVMEGYIGAPGSWIQDDLVCAMTLFGGRRNEQC
DGVNPLFGSIY*
back to top

spliced messenger RNA

>Gvermi7925.t1 ID=Gvermi7925.t1|Name=Gvermi7925.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1386bp|location=Sequence derived from alignment at ScGOVlb_24226:63698..65083+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTTCCTCATTGTGTTTGGCGGCCTGTTACTCTTGCTATCTAATGC
ATGCGCGCAAACGGGCGCCATCCGCCCAGACCGTATTCAGCTGCTGAATG
ACCTCTACGGCCGCGCCATAGGGCTGACCAACTTTCCCGGCACCCCGCTT
ATCTCCTCGCGCCGGGAGACTTTCAATGAACGCATTCAGCGCCTCCGTGG
CGAGATCCCGGACGCCCCACCAGATGTGGAGCCCAATGTCGACGAGACCT
ACAACCCCATGCGGGATGCGAAGTGCTTCAACGCTCCGTACGACACTTCC
GTCGCCGCCTCCAAGCGCAGCTCCCTCTACGCCGACTACGTTCGCATCTT
CGAATGGGGTTTCAACATGCCGCGGTCCTCCCCGATATTCTCACTCTCGG
AGAACGGGGGCGTCTCCAATAATCGCTTTCCAGGCATGTgtctgcgcatg
gcctttcacgacaactccttgaatccgcgcttcggcgaaatcgctccatt
catctcTTCATTCATTTCGTCTTCAGGCGAGTGGACGGGGCCTAAGCGCT
TTTTACCGTCTTCTGGGGGCGACGCATCTGTGCTTACTTGCCGCATCGAG
CGCTTGCATCCTAACCAGAACTACGATCAGACAGCCTCGCGCATTCTCTT
CGCCTTTCAGACCACTATTGTCCCGGGCCTGAACGGCCAGTCGCTTATGT
CTAAATACGATATGTcatacgccgacgccctgcataactgcgcactggcc
gctgtgtcgtggcttagcccggtgcaaggcgccgccgccAAGAACGAAAT
TCGCTTCGGTCGCAAGGACGCTTGCTATTTCTCCGACCTCGAAATCCTGG
CGGAAGATCCGTTGAGCGAGGGAGGCAACAACCCGCTGTGCGGGCCCACT
GAGCTACTGCCCCCCGTCACTTTCAGCGCGAGTGATTCCAACCAATGGTT
CACGTCGCGCGGATTGCCAGAGCGCCAATGGCTGTCACTCATGGGCACAC
ACACCACGTTCGACAACTttggtcgcacggatctgttgcgccgcctctcc
atttcaggcgatgactacttcactgactatgttggtgttcccgtgcatga
gcctcgcccacaagatgtggacggtgatcctgagAATCCCGGCTGCAATT
GGGTTGTCAACGGGCAGGAGCTGTTCTGGCCTATGTCACAGGCTGATTGT
GCGCTGGGCATCGACGTGATCGAAGATCAATCATCGCTTGGCACTCTGCA
GACCGTAATGGAAGGTTATATTGGCGCTCCCGGTTCATGGATTCAAGATG
ACTTGGTATGCGCCATGACATTGTTTGGAGGGCGGAGAAATGAGCAGTGC
GACGGAGTTAATCCGCTGTTCGGGTCGATCTATTAG
back to top

protein sequence of Gvermi7925.t1

>Gvermi7925.t1 ID=Gvermi7925.t1|Name=Gvermi7925.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=462bp
MSFLIVFGGLLLLLSNACAQTGAIRPDRIQLLNDLYGRAIGLTNFPGTPL
ISSRRETFNERIQRLRGEIPDAPPDVEPNVDETYNPMRDAKCFNAPYDTS
VAASKRSSLYADYVRIFEWGFNMPRSSPIFSLSENGGVSNNRFPGMCLRM
AFHDNSLNPRFGEIAPFISSFISSSGEWTGPKRFLPSSGGDASVLTCRIE
RLHPNQNYDQTASRILFAFQTTIVPGLNGQSLMSKYDMSYADALHNCALA
AVSWLSPVQGAAAKNEIRFGRKDACYFSDLEILAEDPLSEGGNNPLCGPT
ELLPPVTFSASDSNQWFTSRGLPERQWLSLMGTHTTFDNFGRTDLLRRLS
ISGDDYFTDYVGVPVHEPRPQDVDGDPENPGCNWVVNGQELFWPMSQADC
ALGIDVIEDQSSLGTLQTVMEGYIGAPGSWIQDDLVCAMTLFGGRRNEQC
DGVNPLFGSIY*
back to top

mRNA from alignment at ScGOVlb_24226:63698..65083+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7925.t1 ID=Gvermi7925.t1|Name=Gvermi7925.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1386bp|location=Sequence derived from alignment at ScGOVlb_24226:63698..65083+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGTTCCTCATTGTGTTTGGCGGCCTGTTACTCTTGCTATCTAATGC
ATGCGCGCAAACGGGCGCCATCCGCCCAGACCGTATTCAGCTGCTGAATG
ACCTCTACGGCCGCGCCATAGGGCTGACCAACTTTCCCGGCACCCCGCTT
ATCTCCTCGCGCCGGGAGACTTTCAATGAACGCATTCAGCGCCTCCGTGG
CGAGATCCCGGACGCCCCACCAGATGTGGAGCCCAATGTCGACGAGACCT
ACAACCCCATGCGGGATGCGAAGTGCTTCAACGCTCCGTACGACACTTCC
GTCGCCGCCTCCAAGCGCAGCTCCCTCTACGCCGACTACGTTCGCATCTT
CGAATGGGGTTTCAACATGCCGCGGTCCTCCCCGATATTCTCACTCTCGG
AGAACGGGGGCGTCTCCAATAATCGCTTTCCAGGCATGTgtctgcgcatg
gcctttcacgacaactccttgaatccgcgcttcggcgaaatcgctccatt
catctcTTCATTCATTTCGTCTTCAGGCGAGTGGACGGGGCCTAAGCGCT
TTTTACCGTCTTCTGGGGGCGACGCATCTGTGCTTACTTGCCGCATCGAG
CGCTTGCATCCTAACCAGAACTACGATCAGACAGCCTCGCGCATTCTCTT
CGCCTTTCAGACCACTATTGTCCCGGGCCTGAACGGCCAGTCGCTTATGT
CTAAATACGATATGTcatacgccgacgccctgcataactgcgcactggcc
gctgtgtcgtggcttagcccggtgcaaggcgccgccgccAAGAACGAAAT
TCGCTTCGGTCGCAAGGACGCTTGCTATTTCTCCGACCTCGAAATCCTGG
CGGAAGATCCGTTGAGCGAGGGAGGCAACAACCCGCTGTGCGGGCCCACT
GAGCTACTGCCCCCCGTCACTTTCAGCGCGAGTGATTCCAACCAATGGTT
CACGTCGCGCGGATTGCCAGAGCGCCAATGGCTGTCACTCATGGGCACAC
ACACCACGTTCGACAACTttggtcgcacggatctgttgcgccgcctctcc
atttcaggcgatgactacttcactgactatgttggtgttcccgtgcatga
gcctcgcccacaagatgtggacggtgatcctgagAATCCCGGCTGCAATT
GGGTTGTCAACGGGCAGGAGCTGTTCTGGCCTATGTCACAGGCTGATTGT
GCGCTGGGCATCGACGTGATCGAAGATCAATCATCGCTTGGCACTCTGCA
GACCGTAATGGAAGGTTATATTGGCGCTCCCGGTTCATGGATTCAAGATG
ACTTGGTATGCGCCATGACATTGTTTGGAGGGCGGAGAAATGAGCAGTGC
GACGGAGTTAATCCGCTGTTCGGGTCGATCTATTAG
back to top

Coding sequence (CDS) from alignment at ScGOVlb_24226:63698..65083+

>Gvermi7925.t1 ID=Gvermi7925.t1|Name=Gvermi7925.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1386bp|location=Sequence derived from alignment at ScGOVlb_24226:63698..65083+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGTTCCTCATTGTGTTTGGCGGCCTGTTACTCTTGCTATCTAATGC
ATGCGCGCAAACGGGCGCCATCCGCCCAGACCGTATTCAGCTGCTGAATG
ACCTCTACGGCCGCGCCATAGGGCTGACCAACTTTCCCGGCACCCCGCTT
ATCTCCTCGCGCCGGGAGACTTTCAATGAACGCATTCAGCGCCTCCGTGG
CGAGATCCCGGACGCCCCACCAGATGTGGAGCCCAATGTCGACGAGACCT
ACAACCCCATGCGGGATGCGAAGTGCTTCAACGCTCCGTACGACACTTCC
GTCGCCGCCTCCAAGCGCAGCTCCCTCTACGCCGACTACGTTCGCATCTT
CGAATGGGGTTTCAACATGCCGCGGTCCTCCCCGATATTCTCACTCTCGG
AGAACGGGGGCGTCTCCAATAATCGCTTTCCAGGCATGTgtctgcgcatg
gcctttcacgacaactccttgaatccgcgcttcggcgaaatcgctccatt
catctcTTCATTCATTTCGTCTTCAGGCGAGTGGACGGGGCCTAAGCGCT
TTTTACCGTCTTCTGGGGGCGACGCATCTGTGCTTACTTGCCGCATCGAG
CGCTTGCATCCTAACCAGAACTACGATCAGACAGCCTCGCGCATTCTCTT
CGCCTTTCAGACCACTATTGTCCCGGGCCTGAACGGCCAGTCGCTTATGT
CTAAATACGATATGTcatacgccgacgccctgcataactgcgcactggcc
gctgtgtcgtggcttagcccggtgcaaggcgccgccgccAAGAACGAAAT
TCGCTTCGGTCGCAAGGACGCTTGCTATTTCTCCGACCTCGAAATCCTGG
CGGAAGATCCGTTGAGCGAGGGAGGCAACAACCCGCTGTGCGGGCCCACT
GAGCTACTGCCCCCCGTCACTTTCAGCGCGAGTGATTCCAACCAATGGTT
CACGTCGCGCGGATTGCCAGAGCGCCAATGGCTGTCACTCATGGGCACAC
ACACCACGTTCGACAACTttggtcgcacggatctgttgcgccgcctctcc
atttcaggcgatgactacttcactgactatgttggtgttcccgtgcatga
gcctcgcccacaagatgtggacggtgatcctgagAATCCCGGCTGCAATT
GGGTTGTCAACGGGCAGGAGCTGTTCTGGCCTATGTCACAGGCTGATTGT
GCGCTGGGCATCGACGTGATCGAAGATCAATCATCGCTTGGCACTCTGCA
GACCGTAATGGAAGGTTATATTGGCGCTCCCGGTTCATGGATTCAAGATG
ACTTGGTATGCGCCATGACATTGTTTGGAGGGCGGAGAAATGAGCAGTGC
GACGGAGTTAATCCGCTGTTCGGGTCGATCTATTAG
back to top